Wall clock time and date at job start Mon Mar 30 2020 02:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 H 1.08999 * 109.47559 * 54.99645 * 3 2 1 5 5 C 1.50706 * 109.47032 * 175.00093 * 3 2 1 6 6 H 1.08001 * 119.99930 * 119.99860 * 5 3 2 7 7 C 1.37871 * 119.99762 * 299.99926 * 5 3 2 8 8 N 1.31518 * 120.00279 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99682 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47383 * 89.99703 * 9 7 5 11 11 H 1.48500 * 109.46982 * 209.99583 * 9 7 5 12 12 H 1.48499 * 109.47210 * 329.99420 * 9 7 5 13 13 N 1.46506 * 109.46824 * 294.99772 * 3 2 1 14 14 C 1.34777 * 119.99873 * 85.00531 * 13 3 2 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3 17 17 H 1.09003 * 112.85111 * 48.80234 * 16 14 13 18 18 C 1.53781 * 113.61458 * 179.97438 * 16 14 13 19 19 C 1.53786 * 87.08067 * 139.98310 * 18 16 14 20 20 H 1.08998 * 113.60770 * 219.93401 * 19 18 16 21 21 N 1.46897 * 113.61511 * 89.11488 * 19 18 16 22 22 C 1.53777 * 87.07974 * 334.56413 * 19 18 16 23 23 H 1.09000 * 109.47158 * 300.00283 * 1 2 3 24 24 H 1.09004 * 109.47334 * 60.00501 * 1 2 3 25 25 H 1.09007 * 109.47386 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47158 * 239.99717 * 2 1 3 27 27 H 1.09004 * 109.47130 * 120.00013 * 2 1 3 28 28 H 0.96995 * 120.00082 * 180.02562 * 8 7 5 29 29 H 0.96995 * 120.00050 * 264.72646 * 13 3 2 30 30 H 1.09008 * 113.61011 * 254.52785 * 18 16 14 31 31 H 1.08990 * 113.61572 * 25.34618 * 18 16 14 32 32 H 1.00903 * 110.99577 * 180.02562 * 21 19 18 33 33 H 1.00904 * 111.00019 * 303.95135 * 21 19 18 34 34 H 1.08999 * 113.61947 * 270.88936 * 22 19 18 35 35 H 1.09007 * 113.61525 * 139.98029 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8812 1.3817 10 1 6.4417 2.1141 2.0847 11 1 6.4395 -0.3098 2.1549 12 1 6.6135 0.8414 0.0277 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0366 3.3385 -2.6545 17 1 0.2334 2.7237 -3.5328 18 6 -1.3809 3.9341 -2.6250 19 6 -0.8083 5.1332 -3.3990 20 1 -1.2033 6.0942 -3.0697 21 7 -0.8532 4.9676 -4.8580 22 6 0.5549 4.7809 -2.7807 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8292 -0.0604 2.9502 29 1 2.2734 2.1265 -1.9965 30 1 -2.1095 3.3554 -3.1929 31 1 -1.7282 4.1851 -1.6229 32 1 -0.4685 5.7748 -5.3255 33 1 -0.3763 4.1246 -5.1411 34 1 0.7374 5.2647 -1.8212 35 1 1.3893 4.8859 -3.4744 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703616046.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:23 Heat of formation + Delta-G solvation = -31.155165 kcal Electronic energy + Delta-G solvation = -16106.416450 eV Core-core repulsion = 13525.381821 eV Total energy + Delta-G solvation = -2581.034628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.98866 -37.74870 -34.94006 -32.35624 -31.62080 -30.72303 -27.21001 -25.55526 -25.12320 -22.90622 -20.64075 -19.36866 -18.77991 -17.60008 -16.15875 -15.55756 -15.27241 -15.05550 -14.46308 -14.29123 -13.45822 -13.27578 -12.69564 -12.63412 -12.33403 -11.87210 -11.46064 -11.36789 -11.16804 -10.97231 -10.84498 -10.53254 -10.35672 -10.29768 -10.11097 -9.61275 -9.04529 -8.96239 -8.72780 -8.48592 -7.77814 -6.12325 -4.21817 3.23402 3.30228 3.31825 3.42075 4.14366 4.34499 4.41131 4.57421 4.77372 4.92884 5.09385 5.18870 5.54656 5.79014 5.81794 5.89509 6.03046 6.15402 6.37381 6.41029 6.47741 6.68169 7.01990 7.05835 7.21637 7.27968 7.39200 7.49997 7.62919 7.75557 7.91563 8.19390 8.71867 8.79455 9.19794 9.46224 10.92985 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037571 B = 0.006799 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.085329 B = 4117.411767 C = 4623.907183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.510 3.490 15 O -0.549 6.549 16 C -0.140 4.140 17 H 0.101 0.899 18 C -0.109 4.109 19 C 0.067 3.933 20 H 0.090 0.910 21 N -0.829 5.829 22 C -0.157 4.157 23 H 0.049 0.951 24 H 0.039 0.961 25 H 0.022 0.978 26 H 0.030 0.970 27 H 0.098 0.902 28 H 0.264 0.736 29 H 0.386 0.614 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.342 0.658 33 H 0.341 0.659 34 H 0.089 0.911 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 6.149 -10.901 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.294 3.706 15 O -0.428 6.428 16 C -0.162 4.162 17 H 0.119 0.881 18 C -0.147 4.147 19 C -0.045 4.045 20 H 0.108 0.892 21 N -0.358 5.358 22 C -0.197 4.197 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.218 0.782 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.108 0.892 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.308 5.969 -9.937 12.750 hybrid contribution 2.507 -0.102 -0.178 2.516 sum -2.800 5.867 -10.115 12.024 Atomic orbital electron populations 1.21837 0.98342 0.97980 1.01254 1.21925 0.92623 0.99862 1.02180 1.18764 0.94099 0.89184 0.81225 0.93464 1.21240 0.90811 1.38932 1.06230 0.92206 1.24888 0.98553 0.94825 0.95421 1.69897 1.35101 1.37669 1.09307 0.86469 0.84942 0.77648 0.78157 1.20593 1.21051 1.19900 1.46497 1.14719 1.55802 1.18460 1.20157 0.82646 0.78921 0.88843 1.90648 1.51633 1.59938 1.40627 1.22770 0.99208 0.96489 0.97705 0.88070 1.22912 0.94925 0.95740 1.01162 1.22505 0.95093 0.99386 0.87528 0.89174 1.58703 1.63878 1.08014 1.05208 1.23660 0.98243 0.95279 1.02566 0.93194 0.94244 0.95910 0.95128 0.88362 0.92576 0.78169 0.90816 0.88236 0.84567 0.84554 0.89207 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.80 2.24 -69.08 -0.15 6.65 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.82 11.29 55.43 0.63 -24.19 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 13 N -0.71 -14.62 5.02 -54.93 -0.28 -14.89 16 14 C 0.51 9.96 5.92 -10.99 -0.07 9.89 16 15 O -0.55 -12.75 13.03 5.55 0.07 -12.68 16 16 C -0.14 -1.99 3.80 -90.96 -0.35 -2.34 16 17 H 0.10 1.25 7.72 -51.93 -0.40 0.85 16 18 C -0.11 -1.47 7.20 -25.92 -0.19 -1.66 16 19 C 0.07 0.74 5.18 -66.90 -0.35 0.39 16 20 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 21 N -0.83 -7.79 9.64 -3.98 -0.04 -7.83 16 22 C -0.16 -1.91 7.34 -25.92 -0.19 -2.10 16 23 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 24 H 0.04 0.87 5.65 -51.93 -0.29 0.58 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 7.01 8.54 -40.82 -0.35 6.66 16 30 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.10 1.51 7.43 -51.93 -0.39 1.13 16 32 H 0.34 2.56 9.08 -39.29 -0.36 2.20 16 33 H 0.34 2.99 8.15 -39.29 -0.32 2.67 16 34 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 282.30 15.07 4.25 4.25 Total: -1.00 -29.78 282.30 -7.19 -36.97 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.29 Total: 10.74 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.51 Total: -7.96 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.31 Total: -46.91 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.78 -7.19 -36.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703616046.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.814 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds