Wall clock time and date at job start Mon Mar 30 2020 02:51:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52995 * 109.47150 * 2 1
4 4 H 1.08999 * 109.47559 * 54.99645 * 3 2 1
5 5 C 1.50706 * 109.47032 * 175.00093 * 3 2 1
6 6 H 1.08001 * 119.99930 * 119.99860 * 5 3 2
7 7 C 1.37871 * 119.99762 * 299.99926 * 5 3 2
8 8 N 1.31518 * 120.00279 * 359.97438 * 7 5 3
9 9 Si 1.86800 * 119.99682 * 180.02562 * 7 5 3
10 10 H 1.48495 * 109.47383 * 89.99703 * 9 7 5
11 11 H 1.48500 * 109.46982 * 209.99583 * 9 7 5
12 12 H 1.48499 * 109.47210 * 329.99420 * 9 7 5
13 13 N 1.46506 * 109.46824 * 294.99772 * 3 2 1
14 14 C 1.34777 * 119.99873 * 85.00531 * 13 3 2
15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3
16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3
17 17 H 1.09003 * 112.85111 * 48.80234 * 16 14 13
18 18 C 1.53781 * 113.61458 * 179.97438 * 16 14 13
19 19 C 1.53786 * 87.08067 * 139.98310 * 18 16 14
20 20 H 1.08998 * 113.60770 * 219.93401 * 19 18 16
21 21 N 1.46897 * 113.61511 * 89.11488 * 19 18 16
22 22 C 1.53777 * 87.07974 * 334.56413 * 19 18 16
23 23 H 1.09000 * 109.47158 * 300.00283 * 1 2 3
24 24 H 1.09004 * 109.47334 * 60.00501 * 1 2 3
25 25 H 1.09007 * 109.47386 * 180.02562 * 1 2 3
26 26 H 1.09000 * 109.47158 * 239.99717 * 2 1 3
27 27 H 1.09004 * 109.47130 * 120.00013 * 2 1 3
28 28 H 0.96995 * 120.00082 * 180.02562 * 8 7 5
29 29 H 0.96995 * 120.00050 * 264.72646 * 13 3 2
30 30 H 1.09008 * 113.61011 * 254.52785 * 18 16 14
31 31 H 1.08990 * 113.61572 * 25.34618 * 18 16 14
32 32 H 1.00903 * 110.99577 * 180.02562 * 21 19 18
33 33 H 1.00904 * 111.00019 * 303.95135 * 21 19 18
34 34 H 1.08999 * 113.61947 * 270.88936 * 22 19 18
35 35 H 1.09007 * 113.61525 * 139.98029 * 22 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 0.8417
5 6 3.5419 1.4442 0.1238
6 1 4.1472 1.8888 -0.6524
7 6 4.1432 0.8783 1.2279
8 7 3.4061 0.3374 2.1733
9 14 6.0049 0.8812 1.3817
10 1 6.4417 2.1141 2.0847
11 1 6.4395 -0.3098 2.1549
12 1 6.6135 0.8414 0.0277
13 7 1.6524 2.0974 -1.2519
14 6 0.4351 2.6643 -1.3670
15 8 -0.3396 2.6319 -0.4344
16 6 0.0366 3.3385 -2.6545
17 1 0.2334 2.7237 -3.5328
18 6 -1.3809 3.9341 -2.6250
19 6 -0.8083 5.1332 -3.3990
20 1 -1.2033 6.0942 -3.0697
21 7 -0.8532 4.9676 -4.8580
22 6 0.5549 4.7809 -2.7807
23 1 -0.3633 0.5139 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3634 -1.0277 0.0005
26 1 1.8933 -0.5139 -0.8900
27 1 1.8933 -0.5139 0.8900
28 1 3.8292 -0.0604 2.9502
29 1 2.2734 2.1265 -1.9965
30 1 -2.1095 3.3554 -3.1929
31 1 -1.7282 4.1851 -1.6229
32 1 -0.4685 5.7748 -5.3255
33 1 -0.3763 4.1246 -5.1411
34 1 0.7374 5.2647 -1.8212
35 1 1.3893 4.8859 -3.4744
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000703616046.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:51:23
Heat of formation + Delta-G solvation = -31.155165 kcal
Electronic energy + Delta-G solvation = -16106.416450 eV
Core-core repulsion = 13525.381821 eV
Total energy + Delta-G solvation = -2581.034628 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-39.98866 -37.74870 -34.94006 -32.35624 -31.62080 -30.72303 -27.21001 -25.55526
-25.12320 -22.90622 -20.64075 -19.36866 -18.77991 -17.60008 -16.15875 -15.55756
-15.27241 -15.05550 -14.46308 -14.29123 -13.45822 -13.27578 -12.69564 -12.63412
-12.33403 -11.87210 -11.46064 -11.36789 -11.16804 -10.97231 -10.84498 -10.53254
-10.35672 -10.29768 -10.11097 -9.61275 -9.04529 -8.96239 -8.72780 -8.48592
-7.77814 -6.12325 -4.21817 3.23402 3.30228 3.31825 3.42075 4.14366
4.34499 4.41131 4.57421 4.77372 4.92884 5.09385 5.18870 5.54656
5.79014 5.81794 5.89509 6.03046 6.15402 6.37381 6.41029 6.47741
6.68169 7.01990 7.05835 7.21637 7.27968 7.39200 7.49997 7.62919
7.75557 7.91563 8.19390 8.71867 8.79455 9.19794 9.46224 10.92985
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.037571 B = 0.006799 C = 0.006054
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 745.085329 B = 4117.411767 C = 4623.907183
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.127 4.127
3 C 0.269 3.731
4 H 0.048 0.952
5 C -0.534 4.534
6 H 0.060 0.940
7 C 0.066 3.934
8 N -0.882 5.882
9 Si 0.900 3.100
10 H -0.280 1.280
11 H -0.285 1.285
12 H -0.274 1.274
13 N -0.708 5.708
14 C 0.510 3.490
15 O -0.549 6.549
16 C -0.140 4.140
17 H 0.101 0.899
18 C -0.109 4.109
19 C 0.067 3.933
20 H 0.090 0.910
21 N -0.829 5.829
22 C -0.157 4.157
23 H 0.049 0.951
24 H 0.039 0.961
25 H 0.022 0.978
26 H 0.030 0.970
27 H 0.098 0.902
28 H 0.264 0.736
29 H 0.386 0.614
30 H 0.073 0.927
31 H 0.099 0.901
32 H 0.342 0.658
33 H 0.341 0.659
34 H 0.089 0.911
35 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.986 6.149 -10.901 13.135
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.166 4.166
3 C 0.167 3.833
4 H 0.065 0.935
5 C -0.572 4.572
6 H 0.078 0.922
7 C -0.137 4.137
8 N -0.520 5.520
9 Si 0.728 3.272
10 H -0.206 1.206
11 H -0.211 1.211
12 H -0.199 1.199
13 N -0.355 5.355
14 C 0.294 3.706
15 O -0.428 6.428
16 C -0.162 4.162
17 H 0.119 0.881
18 C -0.147 4.147
19 C -0.045 4.045
20 H 0.108 0.892
21 N -0.358 5.358
22 C -0.197 4.197
23 H 0.068 0.932
24 H 0.058 0.942
25 H 0.041 0.959
26 H 0.049 0.951
27 H 0.116 0.884
28 H 0.074 0.926
29 H 0.218 0.782
30 H 0.092 0.908
31 H 0.118 0.882
32 H 0.154 0.846
33 H 0.154 0.846
34 H 0.108 0.892
35 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -5.308 5.969 -9.937 12.750
hybrid contribution 2.507 -0.102 -0.178 2.516
sum -2.800 5.867 -10.115 12.024
Atomic orbital electron populations
1.21837 0.98342 0.97980 1.01254 1.21925 0.92623 0.99862 1.02180
1.18764 0.94099 0.89184 0.81225 0.93464 1.21240 0.90811 1.38932
1.06230 0.92206 1.24888 0.98553 0.94825 0.95421 1.69897 1.35101
1.37669 1.09307 0.86469 0.84942 0.77648 0.78157 1.20593 1.21051
1.19900 1.46497 1.14719 1.55802 1.18460 1.20157 0.82646 0.78921
0.88843 1.90648 1.51633 1.59938 1.40627 1.22770 0.99208 0.96489
0.97705 0.88070 1.22912 0.94925 0.95740 1.01162 1.22505 0.95093
0.99386 0.87528 0.89174 1.58703 1.63878 1.08014 1.05208 1.23660
0.98243 0.95279 1.02566 0.93194 0.94244 0.95910 0.95128 0.88362
0.92576 0.78169 0.90816 0.88236 0.84567 0.84554 0.89207 0.91348
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16
2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16
3 C 0.27 6.80 2.24 -69.08 -0.15 6.65 16
4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16
5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16
6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16
7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16
8 N -0.88 -24.82 11.29 55.43 0.63 -24.19 16
9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16
10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16
12 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16
13 N -0.71 -14.62 5.02 -54.93 -0.28 -14.89 16
14 C 0.51 9.96 5.92 -10.99 -0.07 9.89 16
15 O -0.55 -12.75 13.03 5.55 0.07 -12.68 16
16 C -0.14 -1.99 3.80 -90.96 -0.35 -2.34 16
17 H 0.10 1.25 7.72 -51.93 -0.40 0.85 16
18 C -0.11 -1.47 7.20 -25.92 -0.19 -1.66 16
19 C 0.07 0.74 5.18 -66.90 -0.35 0.39 16
20 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
21 N -0.83 -7.79 9.64 -3.98 -0.04 -7.83 16
22 C -0.16 -1.91 7.34 -25.92 -0.19 -2.10 16
23 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16
24 H 0.04 0.87 5.65 -51.93 -0.29 0.58 16
25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16
26 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16
27 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16
28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
29 H 0.39 7.01 8.54 -40.82 -0.35 6.66 16
30 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16
31 H 0.10 1.51 7.43 -51.93 -0.39 1.13 16
32 H 0.34 2.56 9.08 -39.29 -0.36 2.20 16
33 H 0.34 2.99 8.15 -39.29 -0.32 2.67 16
34 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16
35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
LS Contribution 282.30 15.07 4.25 4.25
Total: -1.00 -29.78 282.30 -7.19 -36.97
By element:
Atomic # 1 Polarization: 16.02 SS G_CDS: -5.29 Total: 10.74 kcal
Atomic # 6 Polarization: -6.44 SS G_CDS: -1.51 Total: -7.96 kcal
Atomic # 7 Polarization: -47.22 SS G_CDS: 0.31 Total: -46.91 kcal
Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal
Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal
Total LS contribution 4.25 Total: 4.25 kcal
Total: -29.78 -7.19 -36.97 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000703616046.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.814 kcal
(2) G-P(sol) polarization free energy of solvation -29.784 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.969 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.155 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds