Wall clock time and date at job start Mon Mar 30 2020 02:51:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52995 * 109.47150 * 2 1
4 4 H 1.08999 * 109.47559 * 54.99645 * 3 2 1
5 5 C 1.50706 * 109.47032 * 175.00093 * 3 2 1
6 6 H 1.08001 * 119.99930 * 119.99860 * 5 3 2
7 7 C 1.37871 * 119.99762 * 299.99926 * 5 3 2
8 8 N 1.31518 * 120.00279 * 359.97438 * 7 5 3
9 9 Si 1.86800 * 119.99682 * 180.02562 * 7 5 3
10 10 H 1.48495 * 109.47383 * 89.99703 * 9 7 5
11 11 H 1.48500 * 109.46982 * 209.99583 * 9 7 5
12 12 H 1.48499 * 109.47210 * 329.99420 * 9 7 5
13 13 N 1.46506 * 109.46824 * 294.99772 * 3 2 1
14 14 C 1.34777 * 119.99873 * 85.00531 * 13 3 2
15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3
16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3
17 17 H 1.09003 * 112.85111 * 48.80234 * 16 14 13
18 18 C 1.53781 * 113.61458 * 179.97438 * 16 14 13
19 19 C 1.53786 * 87.08067 * 139.98310 * 18 16 14
20 20 H 1.08998 * 113.60770 * 219.93401 * 19 18 16
21 21 N 1.46897 * 113.61511 * 89.11488 * 19 18 16
22 22 C 1.53777 * 87.07974 * 334.56413 * 19 18 16
23 23 H 1.09000 * 109.47158 * 300.00283 * 1 2 3
24 24 H 1.09004 * 109.47334 * 60.00501 * 1 2 3
25 25 H 1.09007 * 109.47386 * 180.02562 * 1 2 3
26 26 H 1.09000 * 109.47158 * 239.99717 * 2 1 3
27 27 H 1.09004 * 109.47130 * 120.00013 * 2 1 3
28 28 H 0.96995 * 120.00082 * 180.02562 * 8 7 5
29 29 H 0.96995 * 120.00050 * 264.72646 * 13 3 2
30 30 H 1.09008 * 113.61011 * 254.52785 * 18 16 14
31 31 H 1.08990 * 113.61572 * 25.34618 * 18 16 14
32 32 H 1.00903 * 110.99577 * 180.02562 * 21 19 18
33 33 H 1.00904 * 111.00019 * 303.95135 * 21 19 18
34 34 H 1.08999 * 113.61947 * 270.88936 * 22 19 18
35 35 H 1.09007 * 113.61525 * 139.98029 * 22 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6053 1.9816 0.8417
5 6 3.5419 1.4442 0.1238
6 1 4.1472 1.8888 -0.6524
7 6 4.1432 0.8783 1.2279
8 7 3.4061 0.3374 2.1733
9 14 6.0049 0.8812 1.3817
10 1 6.4417 2.1141 2.0847
11 1 6.4395 -0.3098 2.1549
12 1 6.6135 0.8414 0.0277
13 7 1.6524 2.0974 -1.2519
14 6 0.4351 2.6643 -1.3670
15 8 -0.3396 2.6319 -0.4344
16 6 0.0366 3.3385 -2.6545
17 1 0.2334 2.7237 -3.5328
18 6 -1.3809 3.9341 -2.6250
19 6 -0.8083 5.1332 -3.3990
20 1 -1.2033 6.0942 -3.0697
21 7 -0.8532 4.9676 -4.8580
22 6 0.5549 4.7809 -2.7807
23 1 -0.3633 0.5139 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3634 -1.0277 0.0005
26 1 1.8933 -0.5139 -0.8900
27 1 1.8933 -0.5139 0.8900
28 1 3.8292 -0.0604 2.9502
29 1 2.2734 2.1265 -1.9965
30 1 -2.1095 3.3554 -3.1929
31 1 -1.7282 4.1851 -1.6229
32 1 -0.4685 5.7748 -5.3255
33 1 -0.3763 4.1246 -5.1411
34 1 0.7374 5.2647 -1.8212
35 1 1.3893 4.8859 -3.4744
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000703616046.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:51:23
Heat of formation + Delta-G solvation = -53.313501 kcal
Electronic energy + Delta-G solvation = -16107.377307 eV
Core-core repulsion = 13525.381821 eV
Total energy + Delta-G solvation = -2581.995486 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 226.142 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.32290 -39.14950 -36.80564 -34.27751 -32.98138 -32.16936 -29.11621 -26.60812
-26.46014 -24.79231 -22.24304 -21.17481 -19.96683 -19.08617 -17.82034 -17.23208
-16.61200 -16.43389 -16.00952 -15.66926 -15.00833 -14.63530 -14.40235 -13.84521
-13.75329 -13.50308 -13.20690 -13.10621 -12.89928 -12.70555 -12.47174 -12.16662
-12.05385 -11.60530 -11.49836 -11.36400 -11.06142 -10.59941 -10.41894 -9.63996
-9.56709 -8.16982 -6.34723 1.43661 1.43759 1.54580 1.88449 2.36094
2.72262 3.12253 3.50061 3.54784 3.73368 3.87616 4.06158 4.35656
4.47142 4.55800 4.65158 4.76448 4.82918 4.90502 5.00930 5.05260
5.12033 5.24397 5.35132 5.43151 5.55294 5.64607 5.79125 5.93649
6.16709 6.26155 6.65792 6.74198 7.04608 7.33274 7.64319 8.88401
Molecular weight = 226.14amu
Principal moments of inertia in cm(-1)
A = 0.037571 B = 0.006799 C = 0.006054
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 745.085329 B = 4117.411767 C = 4623.907183
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.121 4.121
3 C 0.277 3.723
4 H -0.006 1.006
5 C -0.548 4.548
6 H 0.071 0.929
7 C 0.015 3.985
8 N -0.916 5.916
9 Si 0.970 3.030
10 H -0.279 1.279
11 H -0.284 1.284
12 H -0.260 1.260
13 N -0.705 5.705
14 C 0.504 3.496
15 O -0.591 6.591
16 C -0.134 4.134
17 H 0.130 0.870
18 C -0.115 4.115
19 C 0.088 3.912
20 H 0.099 0.901
21 N -0.829 5.829
22 C -0.151 4.151
23 H 0.023 0.977
24 H 0.044 0.956
25 H 0.045 0.955
26 H 0.041 0.959
27 H 0.070 0.930
28 H 0.265 0.735
29 H 0.402 0.598
30 H 0.078 0.922
31 H 0.075 0.925
32 H 0.356 0.644
33 H 0.348 0.652
34 H 0.070 0.930
35 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.099 6.716 -13.364 15.274
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.160 4.160
3 C 0.173 3.827
4 H 0.012 0.988
5 C -0.586 4.586
6 H 0.089 0.911
7 C -0.185 4.185
8 N -0.554 5.554
9 Si 0.795 3.205
10 H -0.204 1.204
11 H -0.210 1.210
12 H -0.184 1.184
13 N -0.353 5.353
14 C 0.291 3.709
15 O -0.473 6.473
16 C -0.155 4.155
17 H 0.148 0.852
18 C -0.153 4.153
19 C -0.025 4.025
20 H 0.117 0.883
21 N -0.359 5.359
22 C -0.191 4.191
23 H 0.043 0.957
24 H 0.063 0.937
25 H 0.064 0.936
26 H 0.059 0.941
27 H 0.089 0.911
28 H 0.074 0.926
29 H 0.236 0.764
30 H 0.096 0.904
31 H 0.093 0.907
32 H 0.171 0.829
33 H 0.162 0.838
34 H 0.089 0.911
35 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -4.415 6.558 -12.456 14.753
hybrid contribution 2.169 -0.264 0.599 2.266
sum -2.245 6.294 -11.857 13.611
Atomic orbital electron populations
1.21672 0.97022 0.99091 1.00209 1.21777 0.93712 0.99267 1.01213
1.18342 0.93588 0.89139 0.81641 0.98814 1.21586 0.91476 1.38855
1.06671 0.91115 1.25785 1.03351 0.94366 0.95036 1.70054 1.37104
1.38433 1.09853 0.85374 0.79091 0.77429 0.78615 1.20441 1.20954
1.18409 1.46286 1.15733 1.55872 1.17405 1.21134 0.81505 0.77949
0.90298 1.90634 1.52681 1.61239 1.42755 1.22872 0.99958 0.97389
0.95281 0.85188 1.22903 0.94612 0.97246 1.00559 1.22297 0.93423
0.98507 0.88295 0.88302 1.58651 1.64268 1.09123 1.03885 1.23653
0.99966 0.93150 1.02358 0.95748 0.93713 0.93584 0.94061 0.91125
0.92617 0.76399 0.90371 0.90669 0.82928 0.83816 0.91139 0.88972
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.65 8.51 71.98 0.61 -5.04 16
2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16
3 C 0.28 14.32 2.24 44.24 0.10 14.42 16
4 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16
5 C -0.55 -29.07 8.73 25.60 0.22 -28.84 16
6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16
7 C 0.01 0.79 5.29 84.65 0.45 1.24 16
8 N -0.92 -52.83 11.29 21.45 0.24 -52.59 16
9 Si 0.97 42.06 29.54 68.60 2.03 44.08 16
10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16
11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16
12 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16
13 N -0.70 -28.97 5.02 -446.09 -2.24 -31.21 16
14 C 0.50 19.67 5.92 87.66 0.52 20.19 16
15 O -0.59 -28.35 13.03 -3.04 -0.04 -28.39 16
16 C -0.13 -3.55 3.80 -11.01 -0.04 -3.59 16
17 H 0.13 2.75 7.72 -2.39 -0.02 2.73 16
18 C -0.11 -2.94 7.20 31.12 0.22 -2.72 16
19 C 0.09 1.69 5.18 45.44 0.24 1.93 16
20 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16
21 N -0.83 -12.55 9.64 -166.50 -1.60 -14.16 16
22 C -0.15 -3.32 7.34 31.12 0.23 -3.09 16
23 H 0.02 1.20 7.85 -2.39 -0.02 1.19 16
24 H 0.04 1.98 5.65 -2.38 -0.01 1.97 16
25 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16
26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16
27 H 0.07 3.95 5.95 -2.38 -0.01 3.94 16
28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16
29 H 0.40 13.98 8.54 -92.71 -0.79 13.19 16
30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16
31 H 0.07 2.31 7.43 -2.39 -0.02 2.30 16
32 H 0.36 3.93 9.08 -89.69 -0.81 3.12 16
33 H 0.35 4.68 8.15 -89.69 -0.73 3.94 16
34 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16
35 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16
Total: -1.00 -66.13 282.30 -0.13 -66.26
By element:
Atomic # 1 Polarization: 28.62 SS G_CDS: -1.23 Total: 27.39 kcal
Atomic # 6 Polarization: -14.10 SS G_CDS: 2.72 Total: -11.39 kcal
Atomic # 7 Polarization: -94.35 SS G_CDS: -3.60 Total: -97.96 kcal
Atomic # 8 Polarization: -28.35 SS G_CDS: -0.04 Total: -28.39 kcal
Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal
Total: -66.13 -0.13 -66.26 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000703616046.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.943 kcal
(2) G-P(sol) polarization free energy of solvation -66.130 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.187 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.256 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.314 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds