Wall clock time and date at job start Mon Mar 30 2020 02:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 H 1.08999 * 109.47559 * 54.99645 * 3 2 1 5 5 C 1.50706 * 109.47032 * 175.00093 * 3 2 1 6 6 H 1.08001 * 119.99930 * 119.99860 * 5 3 2 7 7 C 1.37871 * 119.99762 * 299.99926 * 5 3 2 8 8 N 1.31518 * 120.00279 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99682 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47383 * 89.99703 * 9 7 5 11 11 H 1.48500 * 109.46982 * 209.99583 * 9 7 5 12 12 H 1.48499 * 109.47210 * 329.99420 * 9 7 5 13 13 N 1.46506 * 109.46824 * 294.99772 * 3 2 1 14 14 C 1.34777 * 119.99873 * 85.00531 * 13 3 2 15 15 O 1.21284 * 119.99754 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00137 * 179.97438 * 14 13 3 17 17 H 1.09003 * 112.85111 * 48.80234 * 16 14 13 18 18 C 1.53781 * 113.61458 * 179.97438 * 16 14 13 19 19 C 1.53786 * 87.08067 * 139.98310 * 18 16 14 20 20 H 1.08998 * 113.60770 * 219.93401 * 19 18 16 21 21 N 1.46897 * 113.61511 * 89.11488 * 19 18 16 22 22 C 1.53777 * 87.07974 * 334.56413 * 19 18 16 23 23 H 1.09000 * 109.47158 * 300.00283 * 1 2 3 24 24 H 1.09004 * 109.47334 * 60.00501 * 1 2 3 25 25 H 1.09007 * 109.47386 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47158 * 239.99717 * 2 1 3 27 27 H 1.09004 * 109.47130 * 120.00013 * 2 1 3 28 28 H 0.96995 * 120.00082 * 180.02562 * 8 7 5 29 29 H 0.96995 * 120.00050 * 264.72646 * 13 3 2 30 30 H 1.09008 * 113.61011 * 254.52785 * 18 16 14 31 31 H 1.08990 * 113.61572 * 25.34618 * 18 16 14 32 32 H 1.00903 * 110.99577 * 180.02562 * 21 19 18 33 33 H 1.00904 * 111.00019 * 303.95135 * 21 19 18 34 34 H 1.08999 * 113.61947 * 270.88936 * 22 19 18 35 35 H 1.09007 * 113.61525 * 139.98029 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8783 1.2279 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8812 1.3817 10 1 6.4417 2.1141 2.0847 11 1 6.4395 -0.3098 2.1549 12 1 6.6135 0.8414 0.0277 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4344 16 6 0.0366 3.3385 -2.6545 17 1 0.2334 2.7237 -3.5328 18 6 -1.3809 3.9341 -2.6250 19 6 -0.8083 5.1332 -3.3990 20 1 -1.2033 6.0942 -3.0697 21 7 -0.8532 4.9676 -4.8580 22 6 0.5549 4.7809 -2.7807 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8292 -0.0604 2.9502 29 1 2.2734 2.1265 -1.9965 30 1 -2.1095 3.3554 -3.1929 31 1 -1.7282 4.1851 -1.6229 32 1 -0.4685 5.7748 -5.3255 33 1 -0.3763 4.1246 -5.1411 34 1 0.7374 5.2647 -1.8212 35 1 1.3893 4.8859 -3.4744 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703616046.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:23 Heat of formation + Delta-G solvation = -53.313501 kcal Electronic energy + Delta-G solvation = -16107.377307 eV Core-core repulsion = 13525.381821 eV Total energy + Delta-G solvation = -2581.995486 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.32290 -39.14950 -36.80564 -34.27751 -32.98138 -32.16936 -29.11621 -26.60812 -26.46014 -24.79231 -22.24304 -21.17481 -19.96683 -19.08617 -17.82034 -17.23208 -16.61200 -16.43389 -16.00952 -15.66926 -15.00833 -14.63530 -14.40235 -13.84521 -13.75329 -13.50308 -13.20690 -13.10621 -12.89928 -12.70555 -12.47174 -12.16662 -12.05385 -11.60530 -11.49836 -11.36400 -11.06142 -10.59941 -10.41894 -9.63996 -9.56709 -8.16982 -6.34723 1.43661 1.43759 1.54580 1.88449 2.36094 2.72262 3.12253 3.50061 3.54784 3.73368 3.87616 4.06158 4.35656 4.47142 4.55800 4.65158 4.76448 4.82918 4.90502 5.00930 5.05260 5.12033 5.24397 5.35132 5.43151 5.55294 5.64607 5.79125 5.93649 6.16709 6.26155 6.65792 6.74198 7.04608 7.33274 7.64319 8.88401 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.037571 B = 0.006799 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.085329 B = 4117.411767 C = 4623.907183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.260 1.260 13 N -0.705 5.705 14 C 0.504 3.496 15 O -0.591 6.591 16 C -0.134 4.134 17 H 0.130 0.870 18 C -0.115 4.115 19 C 0.088 3.912 20 H 0.099 0.901 21 N -0.829 5.829 22 C -0.151 4.151 23 H 0.023 0.977 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.265 0.735 29 H 0.402 0.598 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.356 0.644 33 H 0.348 0.652 34 H 0.070 0.930 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 6.716 -13.364 15.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.184 1.184 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.473 6.473 16 C -0.155 4.155 17 H 0.148 0.852 18 C -0.153 4.153 19 C -0.025 4.025 20 H 0.117 0.883 21 N -0.359 5.359 22 C -0.191 4.191 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.236 0.764 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.415 6.558 -12.456 14.753 hybrid contribution 2.169 -0.264 0.599 2.266 sum -2.245 6.294 -11.857 13.611 Atomic orbital electron populations 1.21672 0.97022 0.99091 1.00209 1.21777 0.93712 0.99267 1.01213 1.18342 0.93588 0.89139 0.81641 0.98814 1.21586 0.91476 1.38855 1.06671 0.91115 1.25785 1.03351 0.94366 0.95036 1.70054 1.37104 1.38433 1.09853 0.85374 0.79091 0.77429 0.78615 1.20441 1.20954 1.18409 1.46286 1.15733 1.55872 1.17405 1.21134 0.81505 0.77949 0.90298 1.90634 1.52681 1.61239 1.42755 1.22872 0.99958 0.97389 0.95281 0.85188 1.22903 0.94612 0.97246 1.00559 1.22297 0.93423 0.98507 0.88295 0.88302 1.58651 1.64268 1.09123 1.03885 1.23653 0.99966 0.93150 1.02358 0.95748 0.93713 0.93584 0.94061 0.91125 0.92617 0.76399 0.90371 0.90669 0.82928 0.83816 0.91139 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.51 71.98 0.61 -5.04 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.28 14.32 2.24 44.24 0.10 14.42 16 4 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 5 C -0.55 -29.07 8.73 25.60 0.22 -28.84 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -52.83 11.29 21.45 0.24 -52.59 16 9 Si 0.97 42.06 29.54 68.60 2.03 44.08 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 13 N -0.70 -28.97 5.02 -446.09 -2.24 -31.21 16 14 C 0.50 19.67 5.92 87.66 0.52 20.19 16 15 O -0.59 -28.35 13.03 -3.04 -0.04 -28.39 16 16 C -0.13 -3.55 3.80 -11.01 -0.04 -3.59 16 17 H 0.13 2.75 7.72 -2.39 -0.02 2.73 16 18 C -0.11 -2.94 7.20 31.12 0.22 -2.72 16 19 C 0.09 1.69 5.18 45.44 0.24 1.93 16 20 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 21 N -0.83 -12.55 9.64 -166.50 -1.60 -14.16 16 22 C -0.15 -3.32 7.34 31.12 0.23 -3.09 16 23 H 0.02 1.20 7.85 -2.39 -0.02 1.19 16 24 H 0.04 1.98 5.65 -2.38 -0.01 1.97 16 25 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.07 3.95 5.95 -2.38 -0.01 3.94 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.40 13.98 8.54 -92.71 -0.79 13.19 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.07 2.31 7.43 -2.39 -0.02 2.30 16 32 H 0.36 3.93 9.08 -89.69 -0.81 3.12 16 33 H 0.35 4.68 8.15 -89.69 -0.73 3.94 16 34 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16 35 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -66.13 282.30 -0.13 -66.26 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -1.23 Total: 27.39 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 2.72 Total: -11.39 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -3.60 Total: -97.96 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.04 Total: -28.39 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -66.13 -0.13 -66.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703616046.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.943 kcal (2) G-P(sol) polarization free energy of solvation -66.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds