Wall clock time and date at job start Mon Mar 30 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47416 * 2 1 4 4 H 1.09004 * 109.46592 * 304.99610 * 3 2 1 5 5 C 1.50700 * 109.47318 * 185.00048 * 3 2 1 6 6 H 1.07999 * 119.99988 * 239.99541 * 5 3 2 7 7 C 1.37885 * 120.00047 * 59.99721 * 5 3 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 3 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 N 1.46497 * 109.47495 * 64.99692 * 3 2 1 14 14 C 1.34780 * 120.00034 * 275.00683 * 13 3 2 15 15 O 1.21278 * 119.99851 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00157 * 179.97438 * 14 13 3 17 17 H 1.09000 * 112.84967 * 48.79785 * 16 14 13 18 18 C 1.53773 * 113.61544 * 179.97438 * 16 14 13 19 19 C 1.53779 * 87.08139 * 139.97927 * 18 16 14 20 20 H 1.09005 * 113.61455 * 220.01651 * 19 18 16 21 21 N 1.46907 * 113.61461 * 89.20041 * 19 18 16 22 22 C 1.53778 * 87.08124 * 334.56855 * 19 18 16 23 23 H 1.08997 * 109.46959 * 300.00373 * 1 2 3 24 24 H 1.09001 * 109.47014 * 60.00223 * 1 2 3 25 25 H 1.08992 * 109.47093 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47546 * 239.99667 * 2 1 3 27 27 H 1.09001 * 109.47014 * 119.99776 * 2 1 3 28 28 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 29 29 H 0.97000 * 120.00091 * 95.00023 * 13 3 2 30 30 H 1.08999 * 113.61481 * 254.52633 * 18 16 14 31 31 H 1.08998 * 113.62031 * 25.34539 * 18 16 14 32 32 H 1.00900 * 110.99920 * 179.97438 * 21 19 18 33 33 H 1.00901 * 110.99780 * 303.95055 * 21 19 18 34 34 H 1.09006 * 113.60920 * 270.88100 * 22 19 18 35 35 H 1.09004 * 113.61725 * 139.98727 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8889 0.6522 7 6 4.1434 0.8783 -1.2280 8 7 3.4065 0.3320 -2.1705 9 14 6.0050 0.8799 -1.3812 10 1 6.5539 -0.3522 -0.7597 11 1 6.3836 0.9212 -2.8165 12 1 6.5576 2.0719 -0.6889 13 7 1.6525 2.0976 1.2517 14 6 0.4352 2.6645 1.3668 15 8 -0.3392 2.6327 0.4340 16 6 0.0363 3.3379 2.6546 17 1 0.7936 4.0302 3.0225 18 6 -1.3807 3.9345 2.6246 19 6 -1.5413 3.4238 4.0662 20 1 -2.5264 3.0062 4.2744 21 7 -1.1038 4.3883 5.0843 22 6 -0.4819 2.3627 3.7248 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8296 -0.0658 -2.9474 29 1 2.2720 2.1233 1.9977 30 1 -1.3952 5.0213 2.5422 31 1 -2.0447 3.4471 1.9108 32 1 -1.2265 4.0141 6.0133 33 1 -0.1466 4.6676 4.9302 34 1 -0.9007 1.4445 3.3129 35 1 0.2291 2.1804 4.5307 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703616048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:26 Heat of formation + Delta-G solvation = -31.189420 kcal Electronic energy + Delta-G solvation = -16146.374650 eV Core-core repulsion = 13565.338536 eV Total energy + Delta-G solvation = -2581.036114 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.00273 -37.73858 -34.94474 -32.35548 -31.61154 -30.75588 -27.20457 -25.55943 -25.12934 -22.91523 -20.65104 -19.37223 -18.78375 -17.59484 -16.16668 -15.64229 -15.13464 -15.05875 -14.50131 -14.31328 -13.59946 -13.11608 -12.74532 -12.62345 -12.34378 -11.85735 -11.50319 -11.36698 -11.16771 -10.99764 -10.82698 -10.53469 -10.34428 -10.29991 -10.13283 -9.62557 -9.04303 -8.96312 -8.72603 -8.48969 -7.77963 -6.12159 -4.21621 3.23505 3.30560 3.32580 3.42061 4.14555 4.34535 4.40657 4.56537 4.76893 4.92289 5.08448 5.19217 5.54450 5.77989 5.81261 5.87416 6.02547 6.15389 6.36889 6.38985 6.46293 6.66545 7.01503 7.04129 7.20773 7.27777 7.38160 7.49837 7.62749 7.75192 7.91746 8.19405 8.71899 8.79588 9.19830 9.46388 10.93080 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.042550 B = 0.006573 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.890215 B = 4258.665772 C = 4606.442036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.708 5.708 14 C 0.510 3.490 15 O -0.549 6.549 16 C -0.140 4.140 17 H 0.102 0.898 18 C -0.109 4.109 19 C 0.068 3.932 20 H 0.090 0.910 21 N -0.830 5.830 22 C -0.157 4.157 23 H 0.038 0.962 24 H 0.049 0.951 25 H 0.021 0.979 26 H 0.099 0.901 27 H 0.029 0.971 28 H 0.264 0.736 29 H 0.386 0.614 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.342 0.658 33 H 0.342 0.658 34 H 0.088 0.912 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.176 3.370 11.985 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.355 5.355 14 C 0.294 3.706 15 O -0.428 6.428 16 C -0.162 4.162 17 H 0.120 0.880 18 C -0.148 4.148 19 C -0.045 4.045 20 H 0.108 0.892 21 N -0.358 5.358 22 C -0.198 4.198 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.117 0.883 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.218 0.782 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.107 0.893 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.274 3.717 10.815 13.044 hybrid contribution 2.194 -0.840 0.469 2.396 sum -4.080 2.877 11.284 12.339 Atomic orbital electron populations 1.21834 0.98403 0.97920 1.01224 1.21930 0.92574 0.99906 1.02180 1.18766 0.94116 0.89165 0.81240 0.93426 1.21243 0.90805 1.38941 1.06226 0.92189 1.24892 0.98578 0.94827 0.95404 1.69897 1.35105 1.37506 1.09479 0.86462 0.84929 0.78404 0.77389 1.20568 1.21055 1.19899 1.46493 1.14697 1.56020 1.18258 1.20155 0.82573 0.79222 0.88613 1.90646 1.51576 1.60236 1.40385 1.22769 0.98929 0.99132 0.95341 0.88001 1.22909 0.95178 1.01289 0.95378 1.22500 0.97864 0.91250 0.92863 0.89205 1.58690 1.28689 1.42948 1.05484 1.23658 0.99434 0.98641 0.98019 0.94306 0.93170 0.95948 0.88332 0.95180 0.92582 0.78172 0.90781 0.88250 0.84569 0.84511 0.89297 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.75 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.27 6.80 2.24 -69.08 -0.15 6.64 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.14 8.73 -34.44 -0.30 -14.44 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.83 11.28 55.43 0.63 -24.20 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.71 -14.62 5.02 -54.93 -0.28 -14.89 16 14 C 0.51 9.96 5.92 -10.98 -0.07 9.90 16 15 O -0.55 -12.75 13.04 5.56 0.07 -12.68 16 16 C -0.14 -1.99 3.81 -90.97 -0.35 -2.34 16 17 H 0.10 1.27 7.72 -51.93 -0.40 0.87 16 18 C -0.11 -1.47 7.20 -25.92 -0.19 -1.66 16 19 C 0.07 0.74 5.17 -66.90 -0.35 0.39 16 20 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 21 N -0.83 -7.76 9.64 -3.97 -0.04 -7.80 16 22 C -0.16 -1.88 7.35 -25.92 -0.19 -2.07 16 23 H 0.04 0.84 5.65 -51.93 -0.29 0.54 16 24 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.10 2.67 5.94 -51.93 -0.31 2.36 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.39 7.00 8.54 -40.82 -0.35 6.66 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 1.51 7.43 -51.93 -0.39 1.12 16 32 H 0.34 2.53 9.08 -39.29 -0.36 2.18 16 33 H 0.34 2.99 8.16 -39.29 -0.32 2.67 16 34 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 282.31 15.07 4.25 4.25 Total: -1.00 -29.80 282.31 -7.19 -36.99 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.29 Total: 10.61 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.51 Total: -7.89 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.31 Total: -46.89 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.80 -7.19 -36.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703616048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.799 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds