Wall clock time and date at job start Mon Mar 30 2020 02:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47416 * 2 1 4 4 H 1.09004 * 109.46592 * 304.99610 * 3 2 1 5 5 C 1.50700 * 109.47318 * 185.00048 * 3 2 1 6 6 H 1.07999 * 119.99988 * 239.99541 * 5 3 2 7 7 C 1.37885 * 120.00047 * 59.99721 * 5 3 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 3 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 N 1.46497 * 109.47495 * 64.99692 * 3 2 1 14 14 C 1.34780 * 120.00034 * 275.00683 * 13 3 2 15 15 O 1.21278 * 119.99851 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00157 * 179.97438 * 14 13 3 17 17 H 1.09000 * 112.84967 * 48.79785 * 16 14 13 18 18 C 1.53773 * 113.61544 * 179.97438 * 16 14 13 19 19 C 1.53779 * 87.08139 * 139.97927 * 18 16 14 20 20 H 1.09005 * 113.61455 * 220.01651 * 19 18 16 21 21 N 1.46907 * 113.61461 * 89.20041 * 19 18 16 22 22 C 1.53778 * 87.08124 * 334.56855 * 19 18 16 23 23 H 1.08997 * 109.46959 * 300.00373 * 1 2 3 24 24 H 1.09001 * 109.47014 * 60.00223 * 1 2 3 25 25 H 1.08992 * 109.47093 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47546 * 239.99667 * 2 1 3 27 27 H 1.09001 * 109.47014 * 119.99776 * 2 1 3 28 28 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 29 29 H 0.97000 * 120.00091 * 95.00023 * 13 3 2 30 30 H 1.08999 * 113.61481 * 254.52633 * 18 16 14 31 31 H 1.08998 * 113.62031 * 25.34539 * 18 16 14 32 32 H 1.00900 * 110.99920 * 179.97438 * 21 19 18 33 33 H 1.00901 * 110.99780 * 303.95055 * 21 19 18 34 34 H 1.09006 * 113.60920 * 270.88100 * 22 19 18 35 35 H 1.09004 * 113.61725 * 139.98727 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8889 0.6522 7 6 4.1434 0.8783 -1.2280 8 7 3.4065 0.3320 -2.1705 9 14 6.0050 0.8799 -1.3812 10 1 6.5539 -0.3522 -0.7597 11 1 6.3836 0.9212 -2.8165 12 1 6.5576 2.0719 -0.6889 13 7 1.6525 2.0976 1.2517 14 6 0.4352 2.6645 1.3668 15 8 -0.3392 2.6327 0.4340 16 6 0.0363 3.3379 2.6546 17 1 0.7936 4.0302 3.0225 18 6 -1.3807 3.9345 2.6246 19 6 -1.5413 3.4238 4.0662 20 1 -2.5264 3.0062 4.2744 21 7 -1.1038 4.3883 5.0843 22 6 -0.4819 2.3627 3.7248 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8296 -0.0658 -2.9474 29 1 2.2720 2.1233 1.9977 30 1 -1.3952 5.0213 2.5422 31 1 -2.0447 3.4471 1.9108 32 1 -1.2265 4.0141 6.0133 33 1 -0.1466 4.6676 4.9302 34 1 -0.9007 1.4445 3.3129 35 1 0.2291 2.1804 4.5307 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703616048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:26 Heat of formation + Delta-G solvation = -53.381164 kcal Electronic energy + Delta-G solvation = -16147.336956 eV Core-core repulsion = 13565.338536 eV Total energy + Delta-G solvation = -2581.998420 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.33283 -39.13086 -36.80941 -34.27746 -32.96763 -32.19369 -29.10629 -26.60602 -26.45015 -24.80048 -22.24148 -21.17525 -19.97151 -19.06449 -17.84727 -17.24308 -16.56777 -16.35461 -15.95083 -15.89276 -14.94274 -14.61744 -14.41348 -13.86279 -13.68730 -13.48903 -13.20403 -13.15525 -12.91361 -12.67190 -12.50590 -12.16699 -12.01797 -11.62977 -11.49120 -11.36965 -11.05370 -10.59299 -10.41719 -9.62396 -9.57678 -8.16945 -6.34703 1.43601 1.44342 1.54799 1.88522 2.36482 2.72342 3.12244 3.50431 3.55198 3.73613 3.87719 4.06258 4.36731 4.47147 4.55156 4.65244 4.76154 4.83328 4.90996 5.01322 5.05449 5.12185 5.23801 5.35987 5.42984 5.55270 5.64669 5.78912 5.94049 6.16993 6.26591 6.66169 6.74213 7.04640 7.33296 7.64354 8.88320 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.042550 B = 0.006573 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.890215 B = 4258.665772 C = 4606.442036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.276 3.724 4 H -0.006 1.006 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.705 5.705 14 C 0.504 3.496 15 O -0.591 6.591 16 C -0.135 4.135 17 H 0.128 0.872 18 C -0.116 4.116 19 C 0.088 3.912 20 H 0.100 0.900 21 N -0.830 5.830 22 C -0.148 4.148 23 H 0.045 0.955 24 H 0.023 0.977 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.265 0.735 29 H 0.402 0.598 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.356 0.644 33 H 0.348 0.652 34 H 0.073 0.927 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.397 3.700 14.510 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.012 0.988 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.353 5.353 14 C 0.291 3.709 15 O -0.473 6.473 16 C -0.156 4.156 17 H 0.145 0.855 18 C -0.154 4.154 19 C -0.025 4.025 20 H 0.118 0.882 21 N -0.360 5.360 22 C -0.189 4.189 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.236 0.764 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.092 0.908 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.491 4.060 13.398 15.039 hybrid contribution 1.900 -0.900 -0.337 2.129 sum -3.591 3.161 13.061 13.910 Atomic orbital electron populations 1.21669 0.96999 0.99058 1.00238 1.21773 0.93735 0.99228 1.01176 1.18344 0.93582 0.89169 0.81641 0.98821 1.21591 0.91495 1.38897 1.06674 0.91128 1.25791 1.03379 0.94360 0.95018 1.70056 1.37101 1.38257 1.10015 0.85363 0.79048 0.78867 0.77160 1.19627 1.21266 1.18916 1.46284 1.15702 1.56096 1.17214 1.21133 0.81411 0.78323 0.90012 1.90632 1.52611 1.61581 1.42487 1.22870 0.99802 1.00056 0.92897 0.85460 1.22911 0.94259 1.01166 0.97099 1.22296 0.98148 0.90529 0.91531 0.88208 1.58635 1.29196 1.42309 1.05908 1.23644 1.00013 0.97774 0.97424 0.93604 0.95792 0.93610 0.91141 0.94132 0.92620 0.76400 0.90621 0.90549 0.82897 0.83852 0.90782 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.52 71.98 0.61 -4.97 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.31 2.24 44.25 0.10 14.41 16 4 H -0.01 -0.38 7.58 -2.38 -0.02 -0.40 16 5 C -0.55 -29.17 8.73 25.60 0.22 -28.94 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.01 0.78 5.29 84.66 0.45 1.23 16 8 N -0.92 -52.83 11.28 21.45 0.24 -52.59 16 9 Si 0.97 42.13 29.54 68.60 2.03 44.15 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 N -0.70 -28.99 5.02 -446.09 -2.24 -31.23 16 14 C 0.50 19.68 5.92 87.66 0.52 20.19 16 15 O -0.59 -28.35 13.04 -3.02 -0.04 -28.39 16 16 C -0.14 -3.59 3.81 -11.02 -0.04 -3.63 16 17 H 0.13 2.77 7.72 -2.39 -0.02 2.75 16 18 C -0.12 -2.98 7.20 31.12 0.22 -2.75 16 19 C 0.09 1.66 5.17 45.44 0.24 1.90 16 20 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 21 N -0.83 -12.54 9.64 -166.48 -1.60 -14.15 16 22 C -0.15 -3.13 7.35 31.12 0.23 -2.90 16 23 H 0.04 1.99 5.65 -2.39 -0.01 1.98 16 24 H 0.02 1.17 7.85 -2.39 -0.02 1.16 16 25 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 3.94 5.94 -2.38 -0.01 3.92 16 27 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.40 13.98 8.54 -92.71 -0.79 13.19 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.08 2.33 7.43 -2.39 -0.02 2.32 16 32 H 0.36 3.87 9.08 -89.69 -0.81 3.06 16 33 H 0.35 4.73 8.16 -89.69 -0.73 4.00 16 34 H 0.07 1.83 8.09 -2.38 -0.02 1.81 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -66.21 282.31 -0.13 -66.34 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -1.23 Total: 27.14 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 2.72 Total: -11.28 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -3.60 Total: -97.97 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.04 Total: -28.39 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -66.21 -0.13 -66.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703616048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.957 kcal (2) G-P(sol) polarization free energy of solvation -66.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds