Wall clock time and date at job start Mon Mar 30 2020 03:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 115.55043 * 2 1 4 4 C 1.52990 * 117.49688 * 214.29717 * 2 1 3 5 5 C 1.52995 * 117.49980 * 145.67123 * 2 1 3 6 6 C 1.52997 * 117.50099 * 359.97438 * 5 2 1 7 7 C 1.52998 * 117.50206 * 214.97535 * 5 2 1 8 8 N 1.46896 * 109.47624 * 180.02562 * 7 5 2 9 9 C 1.46899 * 111.00338 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.46987 * 179.97438 * 9 8 7 11 11 O 1.21293 * 120.00006 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.37104 * 119.99773 * 179.72591 * 12 10 9 14 14 H 1.08002 * 119.99671 * 0.27660 * 13 12 10 15 15 C 1.38950 * 120.00030 * 180.27703 * 13 12 10 16 16 N 1.31413 * 119.99930 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99918 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47112 * 89.99702 * 17 15 13 19 19 H 1.48498 * 109.47011 * 209.99970 * 17 15 13 20 20 H 1.48494 * 109.47201 * 329.99943 * 17 15 13 21 21 H 1.09010 * 109.46602 * 274.32803 * 1 2 3 22 22 H 1.08997 * 109.47053 * 34.32140 * 1 2 3 23 23 H 1.09000 * 109.47225 * 154.32846 * 1 2 3 24 24 H 1.09002 * 117.50540 * 145.01706 * 4 2 1 25 25 H 1.09001 * 117.50176 * 359.97438 * 4 2 1 26 26 H 1.09004 * 109.47094 * 299.91584 * 6 5 2 27 27 H 1.09003 * 109.47225 * 59.90825 * 6 5 2 28 28 H 1.08997 * 109.47688 * 179.90800 * 6 5 2 29 29 H 1.09004 * 109.46677 * 60.00291 * 7 5 2 30 30 H 1.09004 * 109.46850 * 300.00590 * 7 5 2 31 31 H 1.00898 * 110.99977 * 303.96136 * 8 7 5 32 32 H 1.09003 * 109.46477 * 60.00383 * 9 8 7 33 33 H 1.08993 * 109.47002 * 300.00709 * 9 8 7 34 34 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 35 35 H 0.96999 * 119.99993 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9835 0.0000 4 6 2.2364 -1.1211 -0.7647 5 6 2.2365 -1.1207 0.7653 6 6 1.3590 -2.1553 1.4726 7 6 3.5491 -0.7755 1.4716 8 7 4.0720 -1.9715 2.1454 9 6 5.3350 -1.6773 2.8354 10 6 5.8393 -2.9249 3.5137 11 8 5.2088 -3.9578 3.4301 12 7 6.9914 -2.8933 4.2123 13 6 7.4474 -4.0270 4.8342 14 1 6.8856 -4.9464 4.7604 15 6 8.6322 -3.9930 5.5592 16 7 9.0689 -5.0794 6.1557 17 14 9.6034 -2.4024 5.6874 18 1 9.1451 -1.6369 6.8745 19 1 11.0484 -2.7148 5.8274 20 1 9.3887 -1.5913 4.4623 21 1 -0.3633 0.0776 1.0249 22 1 -0.3633 0.8487 -0.5794 23 1 -0.3634 -0.9262 -0.4452 24 1 3.1715 -0.8755 -1.2682 25 1 1.6112 -1.8590 -1.2675 26 1 0.7311 -1.6557 2.2104 27 1 0.7281 -2.6585 0.7398 28 1 1.9923 -2.8889 1.9715 29 1 3.3702 0.0079 2.2081 30 1 4.2753 -0.4255 0.7379 31 1 3.3909 -2.3535 2.7843 32 1 5.1688 -0.9003 3.5816 33 1 6.0732 -1.3333 2.1110 34 1 7.4958 -2.0674 4.2789 35 1 9.8962 -5.0558 6.6615 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704250830.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:24 Heat of formation + Delta-G solvation = -12.983681 kcal Electronic energy + Delta-G solvation = -15318.798644 eV Core-core repulsion = 12738.551990 eV Total energy + Delta-G solvation = -2580.246654 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.08527 -38.24607 -34.96637 -33.81159 -31.64446 -29.80007 -28.01515 -27.39516 -24.93166 -23.12534 -21.03690 -19.42597 -18.72498 -18.21850 -16.35917 -15.63252 -15.33271 -14.78379 -14.56087 -13.92228 -13.77039 -13.37449 -13.16579 -12.86737 -12.75910 -12.41360 -12.08462 -11.94489 -11.79735 -11.64706 -11.41551 -11.14397 -10.96840 -10.58123 -9.97104 -9.89645 -9.58222 -9.54794 -8.54988 -8.16950 -8.06202 -6.29411 -3.80717 3.04274 3.07933 3.16129 3.60806 3.76940 4.11224 4.16612 4.64853 4.73679 4.77910 4.95198 5.11834 5.16680 5.23838 5.43568 5.54249 5.61154 5.69057 5.72277 5.79601 5.84328 5.85380 5.87128 5.94552 5.97774 6.14569 6.17133 6.40967 7.16551 7.60359 7.63826 8.16595 8.62016 8.96904 9.44483 9.85180 10.83819 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.063043 B = 0.004669 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.036725 B = 5995.115299 C = 6262.189056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.156 4.156 3 H 0.100 0.900 4 C -0.164 4.164 5 C -0.114 4.114 6 C -0.121 4.121 7 C 0.096 3.904 8 N -0.667 5.667 9 C 0.047 3.953 10 C 0.451 3.549 11 O -0.564 6.564 12 N -0.591 5.591 13 C -0.305 4.305 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.882 5.882 17 Si 0.880 3.120 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.269 1.269 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.352 0.648 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.370 0.630 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.771 13.292 -9.712 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.175 4.175 3 H 0.118 0.882 4 C -0.201 4.201 5 C -0.114 4.114 6 C -0.178 4.178 7 C -0.033 4.033 8 N -0.301 5.301 9 C -0.086 4.086 10 C 0.236 3.764 11 O -0.446 6.446 12 N -0.231 5.231 13 C -0.433 4.433 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.522 5.522 17 Si 0.706 3.294 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.195 1.195 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.174 0.826 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.203 0.797 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.724 12.218 -10.179 19.757 hybrid contribution 0.766 1.761 0.902 2.122 sum -10.959 13.979 -9.277 20.039 Atomic orbital electron populations 1.21313 0.93009 1.01642 1.01655 1.22458 0.95176 0.94417 1.05412 0.88205 1.23238 1.02163 1.00813 0.93903 1.21487 0.96895 0.99438 0.93608 1.21350 0.98561 0.97802 1.00062 1.21447 0.93632 0.91152 0.97114 1.60146 1.05717 1.28423 1.35844 1.21710 0.93445 0.96245 0.97200 1.19722 0.83174 0.89940 0.83526 1.90561 1.57909 1.32576 1.63558 1.42208 1.21421 1.11860 1.47604 1.19442 1.06585 0.90585 1.26733 0.86286 1.25038 0.96924 0.97341 0.96886 1.69624 1.22454 1.27170 1.32982 0.86664 0.80677 0.83319 0.78692 1.19675 1.20173 1.19475 0.92314 0.92531 0.92535 0.88950 0.88957 0.92721 0.92543 0.90310 0.95267 0.91047 0.82640 0.93844 0.89546 0.79692 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.21 37.16 0.34 -0.64 16 2 C -0.16 -1.50 6.13 -90.62 -0.56 -2.05 16 3 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.16 -1.73 9.47 -26.74 -0.25 -1.98 16 5 C -0.11 -1.31 2.57 -154.51 -0.40 -1.70 16 6 C -0.12 -1.39 8.55 37.16 0.32 -1.07 16 7 C 0.10 1.22 5.87 -3.83 -0.02 1.20 16 8 N -0.67 -10.81 5.74 -115.06 -0.66 -11.47 16 9 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 10 C 0.45 10.46 7.82 -10.99 -0.09 10.38 16 11 O -0.56 -15.43 15.78 5.55 0.09 -15.34 16 12 N -0.59 -14.32 5.09 -10.96 -0.06 -14.38 16 13 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 14 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 16 N -0.88 -26.01 13.96 55.50 0.77 -25.23 16 17 Si 0.88 19.54 27.74 -169.99 -4.71 14.82 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 21 H 0.06 0.48 8.02 -51.92 -0.42 0.06 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.46 7.77 -51.93 -0.40 0.06 16 24 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 25 H 0.09 0.93 7.96 -51.93 -0.41 0.52 16 26 H 0.05 0.57 8.02 -51.93 -0.42 0.15 16 27 H 0.06 0.60 7.77 -51.93 -0.40 0.20 16 28 H 0.08 1.07 5.84 -51.93 -0.30 0.76 16 29 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.87 7.90 -51.93 -0.41 0.46 16 31 H 0.35 5.87 6.24 -39.29 -0.25 5.62 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 290.22 15.07 4.37 4.37 Total: -1.00 -31.95 290.22 -6.46 -38.41 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.33 Total: 11.78 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -0.93 Total: -2.96 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.06 Total: -51.08 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.09 Total: -15.34 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.95 -6.46 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704250830.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.431 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds