Wall clock time and date at job start Mon Mar 30 2020 03:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 115.55043 * 2 1 4 4 C 1.52990 * 117.49688 * 214.29717 * 2 1 3 5 5 C 1.52995 * 117.49980 * 145.67123 * 2 1 3 6 6 C 1.52997 * 117.50099 * 359.97438 * 5 2 1 7 7 C 1.52998 * 117.50206 * 214.97535 * 5 2 1 8 8 N 1.46896 * 109.47624 * 180.02562 * 7 5 2 9 9 C 1.46899 * 111.00338 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.46987 * 179.97438 * 9 8 7 11 11 O 1.21293 * 120.00006 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.37104 * 119.99773 * 179.72591 * 12 10 9 14 14 H 1.08002 * 119.99671 * 0.27660 * 13 12 10 15 15 C 1.38950 * 120.00030 * 180.27703 * 13 12 10 16 16 N 1.31413 * 119.99930 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99918 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47112 * 89.99702 * 17 15 13 19 19 H 1.48498 * 109.47011 * 209.99970 * 17 15 13 20 20 H 1.48494 * 109.47201 * 329.99943 * 17 15 13 21 21 H 1.09010 * 109.46602 * 274.32803 * 1 2 3 22 22 H 1.08997 * 109.47053 * 34.32140 * 1 2 3 23 23 H 1.09000 * 109.47225 * 154.32846 * 1 2 3 24 24 H 1.09002 * 117.50540 * 145.01706 * 4 2 1 25 25 H 1.09001 * 117.50176 * 359.97438 * 4 2 1 26 26 H 1.09004 * 109.47094 * 299.91584 * 6 5 2 27 27 H 1.09003 * 109.47225 * 59.90825 * 6 5 2 28 28 H 1.08997 * 109.47688 * 179.90800 * 6 5 2 29 29 H 1.09004 * 109.46677 * 60.00291 * 7 5 2 30 30 H 1.09004 * 109.46850 * 300.00590 * 7 5 2 31 31 H 1.00898 * 110.99977 * 303.96136 * 8 7 5 32 32 H 1.09003 * 109.46477 * 60.00383 * 9 8 7 33 33 H 1.08993 * 109.47002 * 300.00709 * 9 8 7 34 34 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 35 35 H 0.96999 * 119.99993 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9835 0.0000 4 6 2.2364 -1.1211 -0.7647 5 6 2.2365 -1.1207 0.7653 6 6 1.3590 -2.1553 1.4726 7 6 3.5491 -0.7755 1.4716 8 7 4.0720 -1.9715 2.1454 9 6 5.3350 -1.6773 2.8354 10 6 5.8393 -2.9249 3.5137 11 8 5.2088 -3.9578 3.4301 12 7 6.9914 -2.8933 4.2123 13 6 7.4474 -4.0270 4.8342 14 1 6.8856 -4.9464 4.7604 15 6 8.6322 -3.9930 5.5592 16 7 9.0689 -5.0794 6.1557 17 14 9.6034 -2.4024 5.6874 18 1 9.1451 -1.6369 6.8745 19 1 11.0484 -2.7148 5.8274 20 1 9.3887 -1.5913 4.4623 21 1 -0.3633 0.0776 1.0249 22 1 -0.3633 0.8487 -0.5794 23 1 -0.3634 -0.9262 -0.4452 24 1 3.1715 -0.8755 -1.2682 25 1 1.6112 -1.8590 -1.2675 26 1 0.7311 -1.6557 2.2104 27 1 0.7281 -2.6585 0.7398 28 1 1.9923 -2.8889 1.9715 29 1 3.3702 0.0079 2.2081 30 1 4.2753 -0.4255 0.7379 31 1 3.3909 -2.3535 2.7843 32 1 5.1688 -0.9003 3.5816 33 1 6.0732 -1.3333 2.1110 34 1 7.4958 -2.0674 4.2789 35 1 9.8962 -5.0558 6.6615 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704250830.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:24 Heat of formation + Delta-G solvation = -36.462909 kcal Electronic energy + Delta-G solvation = -15319.816780 eV Core-core repulsion = 12738.551990 eV Total energy + Delta-G solvation = -2581.264790 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.40950 -39.65481 -36.38227 -35.68487 -33.75306 -30.77620 -28.85152 -28.69242 -26.56145 -24.54517 -21.82152 -21.32682 -20.36748 -19.43629 -17.86662 -17.23128 -16.64414 -16.32431 -15.69671 -15.31863 -15.19747 -14.71580 -14.42438 -14.33491 -13.97326 -13.68150 -13.42025 -13.12727 -12.83262 -12.80513 -12.65941 -12.41839 -12.24520 -11.98174 -11.83520 -11.52038 -10.74543 -10.42582 -10.39247 -10.25588 -9.27603 -8.41867 -6.03066 1.30534 1.35548 1.44894 1.94486 2.22976 2.64398 2.91303 3.14457 3.44713 3.81265 3.89069 4.01866 4.14991 4.23807 4.42806 4.47471 4.51204 4.63350 4.69866 4.92210 4.95599 5.00976 5.03728 5.07046 5.18695 5.27590 5.42006 5.52138 5.54697 5.90313 6.06727 6.38655 6.59311 6.87102 7.38756 7.95364 8.75894 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.063043 B = 0.004669 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.036725 B = 5995.115299 C = 6262.189056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 H 0.111 0.889 4 C -0.171 4.171 5 C -0.132 4.132 6 C -0.117 4.117 7 C 0.099 3.901 8 N -0.686 5.686 9 C 0.061 3.939 10 C 0.448 3.552 11 O -0.615 6.615 12 N -0.590 5.590 13 C -0.331 4.331 14 H 0.054 0.946 15 C -0.015 4.015 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.256 1.256 19 H -0.275 1.275 20 H -0.232 1.232 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.345 0.655 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.390 0.610 35 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.572 17.141 -10.609 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.156 4.156 3 H 0.129 0.871 4 C -0.208 4.208 5 C -0.133 4.133 6 C -0.174 4.174 7 C -0.029 4.029 8 N -0.321 5.321 9 C -0.072 4.072 10 C 0.236 3.764 11 O -0.499 6.499 12 N -0.232 5.232 13 C -0.460 4.460 14 H 0.072 0.928 15 C -0.214 4.214 16 N -0.575 5.575 17 Si 0.786 3.214 18 H -0.180 1.180 19 H -0.200 1.200 20 H -0.155 1.155 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.166 0.834 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.226 0.774 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.543 16.094 -11.100 22.704 hybrid contribution 0.600 0.444 1.152 1.372 sum -10.943 16.538 -9.948 22.186 Atomic orbital electron populations 1.21349 0.92063 1.02237 1.02074 1.22541 0.95866 0.94184 1.03017 0.87082 1.23306 1.02597 1.01596 0.93286 1.21499 0.96913 1.00838 0.94032 1.21286 0.98354 0.97507 1.00280 1.21503 0.94205 0.89955 0.97276 1.60161 1.05469 1.30649 1.35822 1.21637 0.94348 0.93010 0.98181 1.20994 0.81968 0.91427 0.82055 1.90540 1.59151 1.35340 1.64892 1.42024 1.22189 1.11225 1.47740 1.19023 1.07349 0.90392 1.29237 0.92751 1.26137 0.97549 1.02404 0.95284 1.69807 1.23330 1.30593 1.33778 0.85342 0.77941 0.77423 0.80669 1.18039 1.19961 1.15486 0.92099 0.91126 0.92693 0.88788 0.88945 0.91812 0.92092 0.92880 0.93856 0.90220 0.83371 0.90511 0.86934 0.77416 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 9.21 71.98 0.66 -1.00 16 2 C -0.14 -2.25 6.13 -10.80 -0.07 -2.32 16 3 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 4 C -0.17 -3.27 9.47 30.59 0.29 -2.98 16 5 C -0.13 -2.79 2.57 -52.18 -0.13 -2.92 16 6 C -0.12 -2.61 8.55 71.98 0.62 -2.00 16 7 C 0.10 2.25 5.87 86.30 0.51 2.76 16 8 N -0.69 -21.28 5.74 -517.94 -2.97 -24.25 16 9 C 0.06 1.91 6.17 85.56 0.53 2.44 16 10 C 0.45 20.73 7.82 87.66 0.69 21.42 16 11 O -0.61 -34.97 15.78 -3.07 -0.05 -35.02 16 12 N -0.59 -28.30 5.09 -306.98 -1.56 -29.86 16 13 C -0.33 -19.68 10.16 84.04 0.85 -18.83 16 14 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 15 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 16 N -0.93 -56.84 13.96 21.66 0.30 -56.54 16 17 Si 0.97 38.98 27.74 68.60 1.90 40.88 16 18 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 19 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 20 H -0.23 -7.87 6.52 99.48 0.65 -7.23 16 21 H 0.06 0.83 8.02 -2.38 -0.02 0.81 16 22 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.05 0.78 7.77 -2.39 -0.02 0.76 16 24 H 0.09 1.75 8.05 -2.39 -0.02 1.73 16 25 H 0.09 1.74 7.96 -2.39 -0.02 1.72 16 26 H 0.06 1.26 8.02 -2.38 -0.02 1.24 16 27 H 0.06 1.26 7.77 -2.39 -0.02 1.24 16 28 H 0.05 1.46 5.84 -2.39 -0.01 1.45 16 29 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.08 1.67 7.90 -2.38 -0.02 1.66 16 31 H 0.35 11.46 6.24 -89.70 -0.56 10.90 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.39 15.40 5.76 -92.71 -0.53 14.87 16 35 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -74.01 290.22 1.96 -72.05 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: -0.07 Total: 36.56 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 4.41 Total: -3.82 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -4.23 Total: -110.65 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.05 Total: -35.02 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.90 Total: 40.88 kcal Total: -74.01 1.96 -72.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704250830.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.586 kcal (2) G-P(sol) polarization free energy of solvation -74.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds