Wall clock time and date at job start Mon Mar 30 2020 03:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 115.56077 * 2 1 4 4 C 1.52998 * 117.50094 * 214.30708 * 2 1 3 5 5 C 1.52996 * 60.00260 * 252.51380 * 4 2 1 6 6 C 1.52992 * 117.50214 * 107.51140 * 5 4 2 7 7 N 1.46898 * 117.49766 * 252.51382 * 5 4 2 8 8 C 1.46906 * 110.99888 * 248.60534 * 7 5 4 9 9 C 1.50699 * 109.47140 * 180.02562 * 8 7 5 10 10 O 1.21282 * 120.00041 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47324 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00339 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99769 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00300 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46755 * 89.99832 * 17 15 13 19 19 H 1.48495 * 109.46931 * 209.99846 * 17 15 13 20 20 H 1.48500 * 109.46738 * 330.00088 * 17 15 13 21 21 H 1.08998 * 109.47539 * 274.31154 * 1 2 3 22 22 H 1.08999 * 109.47397 * 34.31501 * 1 2 3 23 23 H 1.09004 * 109.47082 * 154.31128 * 1 2 3 24 24 H 1.09005 * 117.49624 * 145.02066 * 4 2 1 25 25 H 1.08999 * 117.51960 * 359.97438 * 4 2 1 26 26 H 1.08994 * 109.47738 * 231.25588 * 6 5 4 27 27 H 1.09009 * 109.47157 * 351.26033 * 6 5 4 28 28 H 1.08999 * 109.47210 * 111.25234 * 6 5 4 29 29 H 1.00902 * 111.00533 * 124.64941 * 7 5 4 30 30 H 1.09000 * 109.47033 * 300.00113 * 8 7 5 31 31 H 1.09001 * 109.46544 * 60.00058 * 8 7 5 32 32 H 0.96996 * 119.99844 * 359.97438 * 11 9 8 33 33 H 1.09004 * 109.46923 * 300.00119 * 12 11 9 34 34 H 1.09004 * 109.47042 * 59.99705 * 12 11 9 35 35 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1210 0.7651 6 6 1.3592 -2.1564 1.4715 7 7 3.4965 -0.7896 1.4434 8 6 4.0495 -1.9646 2.1302 9 6 5.3385 -1.5867 2.8134 10 8 5.7558 -0.4506 2.7353 11 7 6.0282 -2.5115 3.5102 12 6 7.2810 -2.1441 4.1748 13 6 7.8483 -3.3494 4.8793 14 1 7.3274 -4.2945 4.8366 15 6 9.0316 -3.2454 5.5792 16 7 9.6656 -2.0943 5.6315 17 14 9.7344 -4.7393 6.4530 18 1 10.6340 -5.4755 5.5289 19 1 10.5022 -4.2994 7.6455 20 1 8.6256 -5.6305 6.8791 21 1 -0.3634 0.0773 1.0247 22 1 -0.3634 0.8488 -0.5793 23 1 -0.3633 -0.9261 -0.4455 24 1 3.1716 -0.8751 -1.2682 25 1 1.6116 -1.8590 -1.2679 26 1 0.7312 -1.6578 2.2097 27 1 0.7285 -2.6593 0.7383 28 1 1.9928 -2.8902 1.9697 29 1 3.3706 -0.0215 2.0854 30 1 3.3357 -2.3204 2.8732 31 1 4.2409 -2.7537 1.4031 32 1 5.6946 -3.4202 3.5723 33 1 7.9949 -1.7872 3.4324 34 1 7.0886 -1.3555 4.9023 35 1 10.4983 -2.0211 6.1235 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704255539.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:34 Heat of formation + Delta-G solvation = -45.220349 kcal Electronic energy + Delta-G solvation = -15235.278528 eV Core-core repulsion = 12653.633988 eV Total energy + Delta-G solvation = -2581.644541 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.69339 -39.51410 -36.17414 -34.80246 -34.31787 -30.08497 -29.33954 -28.79606 -26.99400 -24.38225 -22.00472 -21.30720 -19.99631 -19.02359 -17.79506 -17.19105 -16.81181 -16.45606 -16.22431 -15.29585 -15.05981 -14.54741 -14.32730 -14.15804 -14.01552 -13.72517 -13.57485 -13.09445 -12.92752 -12.81571 -12.70909 -12.53673 -12.23027 -12.16274 -11.49278 -11.06466 -10.80800 -10.70691 -10.54161 -9.84352 -9.36047 -8.29438 -6.46430 1.43215 1.45910 1.57116 1.75969 2.26235 2.45974 2.81141 3.05387 3.17168 3.85241 3.91899 3.94298 4.13111 4.31685 4.44752 4.45324 4.55684 4.81809 4.92491 4.98931 5.02052 5.08136 5.11450 5.17869 5.23099 5.29373 5.48019 5.48572 5.68214 5.84109 6.03003 6.30223 6.64790 6.92156 7.23111 7.49949 8.82904 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.070525 B = 0.004268 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.924240 B = 6558.207493 C = 6779.519471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.143 4.143 3 H 0.093 0.907 4 C -0.157 4.157 5 C 0.025 3.975 6 C -0.142 4.142 7 N -0.657 5.657 8 C 0.059 3.941 9 C 0.492 3.508 10 O -0.594 6.594 11 N -0.708 5.708 12 C 0.266 3.734 13 C -0.556 4.556 14 H 0.085 0.915 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.987 3.013 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.254 1.254 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.113 0.887 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.344 0.656 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.409 0.591 33 H -0.015 1.015 34 H -0.013 1.013 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.257 -3.470 -9.039 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.162 4.162 3 H 0.111 0.889 4 C -0.195 4.195 5 C -0.067 4.067 6 C -0.201 4.201 7 N -0.288 5.288 8 C -0.073 4.073 9 C 0.279 3.721 10 O -0.475 6.475 11 N -0.358 5.358 12 C 0.143 3.857 13 C -0.594 4.594 14 H 0.103 0.897 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.809 3.191 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.178 1.178 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.131 0.869 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.164 0.836 30 H 0.108 0.892 31 H 0.135 0.865 32 H 0.245 0.755 33 H 0.003 0.997 34 H 0.005 0.995 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.406 -2.667 -9.566 20.915 hybrid contribution 0.406 -0.441 1.267 1.401 sum -18.001 -3.107 -8.299 20.064 Atomic orbital electron populations 1.21352 0.90902 1.02809 1.02237 1.22598 0.96146 0.94110 1.03346 0.88876 1.23379 1.01998 1.01213 0.92923 1.21767 0.90313 1.00986 0.93610 1.21829 0.99212 0.97840 1.01174 1.59983 1.26285 1.07323 1.35209 1.21809 0.91861 0.95054 0.98552 1.21466 0.87053 0.84970 0.78653 1.90639 1.71327 1.22535 1.63013 1.46164 1.24513 1.13642 1.51500 1.18532 0.80961 0.95720 0.90459 1.21628 1.08224 0.96506 1.33040 0.89672 1.26101 0.96901 0.99832 0.96904 1.70144 1.17534 1.26958 1.42425 0.85130 0.78571 0.77862 0.77488 1.19621 1.20988 1.17762 0.91973 0.91428 0.91361 0.90026 0.86874 0.91680 0.90055 0.91231 0.83595 0.89172 0.86482 0.75527 0.99722 0.99499 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 9.22 71.98 0.66 -0.86 16 2 C -0.14 -2.68 6.33 -10.79 -0.07 -2.74 16 3 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 4 C -0.16 -3.04 9.75 30.59 0.30 -2.74 16 5 C 0.02 0.51 2.80 3.53 0.01 0.52 16 6 C -0.14 -2.23 8.50 71.98 0.61 -1.61 16 7 N -0.66 -18.57 6.33 -474.15 -3.00 -21.57 16 8 C 0.06 1.63 5.18 85.56 0.44 2.08 16 9 C 0.49 20.09 7.87 87.66 0.69 20.78 16 10 O -0.59 -30.44 16.20 -3.04 -0.05 -30.49 16 11 N -0.71 -30.20 5.55 -466.78 -2.59 -32.79 16 12 C 0.27 14.87 5.43 85.63 0.46 15.33 16 13 C -0.56 -30.47 9.28 25.60 0.24 -30.23 16 14 H 0.09 4.18 7.60 -2.91 -0.02 4.16 16 15 C 0.00 0.12 5.46 84.65 0.46 0.58 16 16 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 17 Si 0.99 42.39 29.54 68.60 2.03 44.42 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 21 H 0.06 0.79 8.03 -2.39 -0.02 0.77 16 22 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.07 0.75 7.77 -2.38 -0.02 0.73 16 24 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.11 1.67 7.96 -2.39 -0.02 1.66 16 26 H 0.06 0.96 8.03 -2.39 -0.02 0.94 16 27 H 0.08 1.00 7.77 -2.38 -0.02 0.98 16 28 H 0.07 1.08 5.61 -2.39 -0.01 1.06 16 29 H 0.34 10.46 8.52 -89.69 -0.76 9.70 16 30 H 0.09 1.99 6.35 -2.39 -0.02 1.98 16 31 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.41 14.15 8.32 -92.71 -0.77 13.38 16 33 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 34 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -71.78 295.14 0.04 -71.75 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: -0.45 Total: 24.11 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 3.81 Total: 1.10 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -5.31 Total: -110.89 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.05 Total: -30.49 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -71.78 0.04 -71.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704255539.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.527 kcal (2) G-P(sol) polarization free energy of solvation -71.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds