Wall clock time and date at job start Mon Mar 30 2020 03:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 115.54935 * 2 1 4 4 C 1.53006 * 117.52005 * 214.30642 * 2 1 3 5 5 C 1.52996 * 117.50252 * 145.67506 * 2 1 3 6 6 C 1.52994 * 117.50191 * 215.02606 * 5 2 1 7 7 N 1.46904 * 117.49572 * 0.02562 * 5 2 1 8 8 C 1.46899 * 111.00029 * 180.02562 * 7 5 2 9 9 C 1.50703 * 109.47107 * 179.97438 * 8 7 5 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00271 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47174 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00129 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99861 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47432 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47062 * 119.99742 * 17 15 13 20 20 H 1.48506 * 109.46890 * 239.99790 * 17 15 13 21 21 H 1.08998 * 109.47293 * 274.32381 * 1 2 3 22 22 H 1.08999 * 109.47110 * 34.32776 * 1 2 3 23 23 H 1.09002 * 109.47127 * 154.32515 * 1 2 3 24 24 H 1.09001 * 117.50058 * 145.02766 * 4 2 1 25 25 H 1.09004 * 117.49693 * 0.02562 * 4 2 1 26 26 H 1.09004 * 109.47111 * 180.02562 * 6 5 2 27 27 H 1.09000 * 109.47282 * 300.08673 * 6 5 2 28 28 H 1.09000 * 109.47399 * 60.08764 * 6 5 2 29 29 H 1.00902 * 111.00190 * 56.03811 * 7 5 2 30 30 H 1.09002 * 109.47043 * 299.99792 * 8 7 5 31 31 H 1.09001 * 109.47354 * 59.99854 * 8 7 5 32 32 H 0.97005 * 119.99463 * 359.97438 * 11 9 8 33 33 H 1.09002 * 109.47021 * 299.99722 * 12 11 9 34 34 H 1.09001 * 109.47001 * 59.99554 * 12 11 9 35 35 H 0.97002 * 119.99768 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2370 -1.1209 -0.7648 5 6 2.2365 -1.1207 0.7652 6 6 3.5485 -0.7753 1.4725 7 7 1.3939 -2.1148 1.4433 8 6 2.2153 -3.1202 2.1306 9 6 1.3182 -4.1203 2.8135 10 8 0.1133 -4.0064 2.7356 11 7 1.8549 -5.1407 3.5115 12 6 0.9829 -6.1131 4.1748 13 6 1.8256 -7.1445 4.8800 14 1 2.9029 -7.0821 4.8379 15 6 1.2211 -8.1684 5.5781 16 7 -0.0908 -8.2447 5.6289 17 14 2.2656 -9.4472 6.4516 18 1 3.7032 -9.1392 6.2420 19 1 1.9612 -9.4262 7.9049 20 1 1.9629 -10.7931 5.9017 21 1 -0.3634 0.0775 1.0247 22 1 -0.3633 0.8487 -0.5795 23 1 -0.3633 -0.9262 -0.4453 24 1 3.1722 -0.8749 -1.2678 25 1 1.6120 -1.8584 -1.2685 26 1 3.9365 -1.6629 1.9722 27 1 4.2745 -0.4231 0.7397 28 1 3.3686 0.0066 2.2103 29 1 0.7557 -2.5508 0.7946 30 1 2.8451 -3.6334 1.4038 31 1 2.8438 -2.6296 2.8738 32 1 2.8187 -5.2315 3.5740 33 1 0.3528 -5.5999 4.9012 34 1 0.3547 -6.6042 3.4316 35 1 -0.5161 -8.9648 6.1203 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704255541.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:37 Heat of formation + Delta-G solvation = -20.844969 kcal Electronic energy + Delta-G solvation = -15323.433500 eV Core-core repulsion = 12742.845955 eV Total energy + Delta-G solvation = -2580.587545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.39546 -38.28598 -34.21864 -33.38434 -32.28840 -29.75112 -27.89309 -27.19289 -25.52424 -22.38515 -21.20228 -19.67082 -19.14420 -17.30065 -16.01403 -15.85683 -15.30357 -15.03123 -14.49800 -14.18129 -13.61108 -13.39937 -12.90237 -12.78974 -12.65879 -12.26893 -12.20218 -12.00848 -11.84199 -11.49100 -11.34589 -10.95069 -10.90248 -10.46592 -10.31398 -9.85160 -9.37553 -8.98953 -8.73522 -8.12379 -7.85477 -6.16433 -4.23307 3.23554 3.30482 3.33535 3.39250 3.54381 3.84692 4.30478 4.51207 4.55624 4.69917 4.78230 5.19750 5.25862 5.31349 5.47336 5.48686 5.57284 5.59531 5.66803 5.71526 5.79268 5.90236 5.96362 6.03149 6.31791 6.98718 7.32503 7.38652 7.45993 7.53033 7.68103 7.97641 8.64286 8.79345 9.12617 9.43536 10.93876 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.059989 B = 0.004527 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.640769 B = 6183.493334 C = 6503.041764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 H 0.103 0.897 4 C -0.216 4.216 5 C 0.056 3.944 6 C -0.121 4.121 7 N -0.630 5.630 8 C 0.038 3.962 9 C 0.496 3.504 10 O -0.545 6.545 11 N -0.714 5.714 12 C 0.250 3.750 13 C -0.543 4.543 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.353 0.647 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.390 0.610 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 13.461 -10.101 18.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 H 0.121 0.879 4 C -0.256 4.256 5 C -0.036 4.036 6 C -0.179 4.179 7 N -0.261 5.261 8 C -0.095 4.095 9 C 0.280 3.720 10 O -0.423 6.423 11 N -0.363 5.363 12 C 0.129 3.871 13 C -0.581 4.581 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.174 0.826 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.222 0.778 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.524 13.757 -9.472 17.932 hybrid contribution 1.252 -1.323 -0.287 1.844 sum 7.776 12.434 -9.759 17.615 Atomic orbital electron populations 1.21249 0.92436 1.01276 1.02562 1.22560 0.95909 0.94088 1.03266 0.87851 1.23907 1.02849 1.02727 0.96107 1.21699 0.94933 0.97433 0.89578 1.21504 0.93500 1.02463 1.00398 1.59845 1.17239 1.15806 1.33237 1.21939 0.95638 0.93005 0.98881 1.20374 0.89149 0.82237 0.80273 1.90663 1.15069 1.74652 1.61870 1.46435 1.10752 1.27462 1.51665 1.19098 0.89937 0.85835 0.92207 1.21270 0.93206 1.10411 1.33228 0.91848 1.24958 0.95063 0.97854 0.96173 1.69987 1.08455 1.32519 1.41322 0.86361 0.80220 0.81016 0.79305 1.19637 1.20776 1.20811 0.91244 0.92855 0.92718 0.88966 0.88952 0.91218 0.91942 0.91447 0.82586 0.92622 0.88054 0.77787 0.95504 0.95621 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.49 37.16 0.35 -0.91 16 2 C -0.14 -1.44 6.13 -90.62 -0.56 -1.99 16 3 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.22 -2.17 9.52 -26.73 -0.25 -2.42 16 5 C 0.06 0.64 2.89 -131.60 -0.38 0.26 16 6 C -0.12 -1.15 9.48 37.15 0.35 -0.80 16 7 N -0.63 -9.04 5.86 -101.22 -0.59 -9.63 16 8 C 0.04 0.54 5.18 -4.98 -0.03 0.52 16 9 C 0.50 9.96 7.87 -10.98 -0.09 9.87 16 10 O -0.54 -13.29 16.20 5.56 0.09 -13.20 16 11 N -0.71 -15.05 5.55 -61.47 -0.34 -15.39 16 12 C 0.25 6.68 5.43 -5.20 -0.03 6.65 16 13 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 14 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 17 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.60 7.69 -51.93 -0.40 0.20 16 24 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 25 H 0.09 0.95 8.00 -51.93 -0.42 0.54 16 26 H 0.07 0.65 5.60 -51.93 -0.29 0.36 16 27 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.35 5.32 7.79 -39.29 -0.31 5.01 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.30 6.35 -51.93 -0.33 0.97 16 32 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 295.09 15.07 4.45 4.45 Total: -1.00 -31.79 295.09 -7.13 -38.91 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.40 Total: 6.78 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.04 Total: -2.26 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.20 Total: -50.52 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.79 -7.13 -38.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704255541.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.068 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds