Wall clock time and date at job start Mon Mar 30 2020 03:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 115.55913 * 2 1 4 4 C 1.53000 * 117.49649 * 145.69052 * 2 1 3 5 5 C 1.52997 * 60.00053 * 107.48791 * 4 2 1 6 6 C 1.53001 * 117.49514 * 107.51070 * 5 4 2 7 7 N 1.46895 * 117.50024 * 252.50612 * 5 4 2 8 8 C 1.46896 * 111.00306 * 248.61139 * 7 5 4 9 9 C 1.50696 * 109.47452 * 179.97438 * 8 7 5 10 10 O 1.21284 * 120.00109 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00137 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.46928 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00302 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99832 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47310 * 89.99428 * 17 15 13 19 19 H 1.48491 * 109.47296 * 209.99911 * 17 15 13 20 20 H 1.48502 * 109.46905 * 329.99956 * 17 15 13 21 21 H 1.09009 * 109.47665 * 205.68746 * 1 2 3 22 22 H 1.09000 * 109.47303 * 325.68926 * 1 2 3 23 23 H 1.09002 * 109.47016 * 85.69066 * 1 2 3 24 24 H 1.08997 * 117.49988 * 359.97438 * 4 2 1 25 25 H 1.09003 * 117.51477 * 214.97674 * 4 2 1 26 26 H 1.08999 * 109.47006 * 231.25086 * 6 5 4 27 27 H 1.08993 * 109.47518 * 351.25151 * 6 5 4 28 28 H 1.08998 * 109.46830 * 111.25684 * 6 5 4 29 29 H 1.00907 * 111.00152 * 12.56614 * 7 5 4 30 30 H 1.09004 * 109.47072 * 59.99853 * 8 7 5 31 31 H 1.09000 * 109.47017 * 299.99890 * 8 7 5 32 32 H 0.96995 * 120.00018 * 0.27749 * 11 9 8 33 33 H 1.09000 * 109.47212 * 300.00355 * 12 11 9 34 34 H 1.09001 * 109.46577 * 60.00430 * 12 11 9 35 35 H 0.97002 * 119.99998 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2364 -1.1210 -0.7650 6 6 3.5491 -0.7765 -1.4713 7 7 1.3938 -2.1149 -1.4433 8 6 2.2152 -3.1207 -2.1300 9 6 1.3182 -4.1213 -2.8121 10 8 0.1132 -4.0080 -2.7335 11 7 1.8550 -5.1420 -3.5095 12 6 0.9829 -6.1151 -4.1721 13 6 1.8255 -7.1468 -4.8767 14 1 2.9029 -7.0838 -4.8354 15 6 1.2212 -8.1706 -5.5749 16 7 1.9566 -9.0707 -6.1902 17 14 -0.6423 -8.2784 -5.6481 18 1 -1.1364 -7.5179 -6.8241 19 1 -1.0515 -9.7006 -5.7707 20 1 -1.2205 -7.7022 -4.4075 21 1 -0.3635 -0.9261 0.4455 22 1 -0.3634 0.8488 0.5793 23 1 -0.3633 0.0772 -1.0248 24 1 1.6112 -1.8583 1.2686 25 1 3.1715 -0.8755 1.2684 26 1 3.3702 0.0052 -2.2096 27 1 4.2748 -0.4245 -0.7382 28 1 3.9376 -1.6647 -1.9695 29 1 0.7555 -2.5509 -0.7947 30 1 2.8445 -3.6339 -1.4029 31 1 2.8442 -2.6304 -2.8730 32 1 2.8186 -5.2350 -3.5690 33 1 0.3548 -6.6056 -3.4285 34 1 0.3526 -5.6023 -4.8988 35 1 1.5313 -9.7912 -6.6811 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704255547.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:40 Heat of formation + Delta-G solvation = -40.828172 kcal Electronic energy + Delta-G solvation = -15375.618769 eV Core-core repulsion = 12794.164687 eV Total energy + Delta-G solvation = -2581.454082 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.75816 -39.56954 -36.17897 -34.59011 -34.34733 -30.66888 -30.19105 -28.06641 -27.04894 -23.89661 -22.03951 -21.47058 -20.06308 -19.19895 -17.91494 -17.19156 -16.84134 -16.43496 -16.10365 -15.61223 -14.90584 -14.79206 -14.38594 -14.26938 -13.98973 -13.64896 -13.57644 -13.11744 -13.04306 -12.93860 -12.74887 -12.63533 -12.17869 -11.94134 -11.66181 -11.34212 -10.92397 -10.81549 -10.62332 -9.93224 -9.10760 -8.40546 -6.47490 1.32382 1.34680 1.47071 1.72636 2.26597 2.29566 2.80366 2.94959 3.27302 3.74756 3.84985 3.95841 3.96866 4.36724 4.43165 4.49684 4.59807 4.78230 4.83125 4.90405 4.93887 5.00603 5.02432 5.05069 5.22477 5.24549 5.25986 5.47088 5.51781 5.98747 6.11260 6.27982 6.53689 6.85802 7.15583 7.42013 8.74161 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.053509 B = 0.004906 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.154297 B = 5706.147101 C = 6082.853779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.140 4.140 3 H 0.120 0.880 4 C -0.205 4.205 5 C 0.042 3.958 6 C -0.121 4.121 7 N -0.648 5.648 8 C 0.053 3.947 9 C 0.497 3.503 10 O -0.588 6.588 11 N -0.706 5.706 12 C 0.232 3.768 13 C -0.547 4.547 14 H 0.061 0.939 15 C 0.027 3.973 16 N -0.931 5.931 17 Si 0.937 3.063 18 H -0.266 1.266 19 H -0.272 1.272 20 H -0.262 1.262 21 H 0.045 0.955 22 H 0.068 0.932 23 H 0.051 0.949 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.346 0.654 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.409 0.591 33 H 0.011 0.989 34 H 0.009 0.991 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 17.056 12.678 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.159 4.159 3 H 0.138 0.862 4 C -0.245 4.245 5 C -0.050 4.050 6 C -0.178 4.178 7 N -0.279 5.279 8 C -0.079 4.079 9 C 0.284 3.716 10 O -0.469 6.469 11 N -0.356 5.356 12 C 0.108 3.892 13 C -0.585 4.585 14 H 0.079 0.921 15 C -0.173 4.173 16 N -0.570 5.570 17 Si 0.761 3.239 18 H -0.190 1.190 19 H -0.197 1.197 20 H -0.186 1.186 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.070 0.930 24 H 0.105 0.895 25 H 0.128 0.872 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.165 0.835 30 H 0.101 0.899 31 H 0.143 0.857 32 H 0.245 0.755 33 H 0.029 0.971 34 H 0.027 0.973 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.128 17.316 12.018 21.185 hybrid contribution -0.169 -1.143 0.364 1.212 sum 1.959 16.173 12.382 20.462 Atomic orbital electron populations 1.21225 0.93110 1.01543 1.01571 1.22666 0.95514 0.94816 1.02944 0.86243 1.23914 1.03380 1.02097 0.95087 1.21869 0.95532 0.97150 0.90458 1.21541 0.92843 1.02583 1.00845 1.59860 1.18069 1.15977 1.33951 1.21856 0.94458 0.91918 0.99654 1.21345 0.89276 0.82031 0.78955 1.90634 1.17314 1.75703 1.63206 1.46001 1.11192 1.26768 1.51673 1.19075 0.90890 0.87349 0.91841 1.21300 0.94522 1.09932 1.32724 0.92109 1.25584 1.02982 0.94676 0.94059 1.69978 1.37728 1.15167 1.34088 0.85864 0.80261 0.78101 0.79691 1.19049 1.19735 1.18638 0.93579 0.91289 0.93032 0.89538 0.87166 0.91541 0.90020 0.91029 0.83465 0.89857 0.85720 0.75484 0.97075 0.97263 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 9.49 71.98 0.68 -1.58 16 2 C -0.14 -2.47 6.13 -10.79 -0.07 -2.53 16 3 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 4 C -0.21 -3.41 9.52 30.59 0.29 -3.12 16 5 C 0.04 0.81 2.89 3.53 0.01 0.82 16 6 C -0.12 -1.84 9.48 71.98 0.68 -1.16 16 7 N -0.65 -16.73 5.86 -474.17 -2.78 -19.51 16 8 C 0.05 1.34 5.18 85.56 0.44 1.78 16 9 C 0.50 18.44 7.87 87.66 0.69 19.13 16 10 O -0.59 -26.91 16.20 -3.04 -0.05 -26.96 16 11 N -0.71 -27.99 5.55 -466.78 -2.59 -30.58 16 12 C 0.23 11.49 4.50 85.63 0.38 11.87 16 13 C -0.55 -30.24 9.83 25.60 0.25 -29.99 16 14 H 0.06 3.51 7.84 -2.91 -0.02 3.48 16 15 C 0.03 1.55 5.47 84.65 0.46 2.01 16 16 N -0.93 -55.62 13.96 21.45 0.30 -55.32 16 17 Si 0.94 44.38 27.47 68.60 1.88 46.26 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.26 -12.36 6.54 99.48 0.65 -11.71 16 21 H 0.05 0.94 7.69 -2.38 -0.02 0.92 16 22 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.09 1.55 8.00 -2.39 -0.02 1.53 16 25 H 0.11 1.45 8.05 -2.39 -0.02 1.44 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 0.94 7.90 -2.39 -0.02 0.92 16 28 H 0.07 1.05 5.61 -2.39 -0.01 1.04 16 29 H 0.35 9.62 7.78 -89.69 -0.70 8.92 16 30 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.13 2.69 6.35 -2.39 -0.02 2.68 16 32 H 0.41 13.94 8.32 -92.71 -0.77 13.17 16 33 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 34 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -67.67 291.48 0.16 -67.51 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -0.43 Total: 21.36 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 3.83 Total: -2.77 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -5.07 Total: -105.40 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.05 Total: -26.96 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -67.67 0.16 -67.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704255547.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.683 kcal (2) G-P(sol) polarization free energy of solvation -67.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds