Wall clock time and date at job start Mon Mar 30 2020 03:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 115.55545 * 2 1 4 4 C 1.53004 * 117.51820 * 145.69799 * 2 1 3 5 5 C 1.53002 * 60.00020 * 107.48433 * 4 2 1 6 6 C 1.53006 * 117.49773 * 252.51113 * 5 4 2 7 7 N 1.46896 * 117.51889 * 107.48610 * 5 4 2 8 8 C 1.46896 * 111.00171 * 111.28318 * 7 5 4 9 9 C 1.50698 * 109.47115 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00406 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00128 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00330 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47509 * 180.02562 * 12 11 9 14 14 H 1.08007 * 119.99950 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00482 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99636 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00233 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46951 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47025 * 119.99781 * 17 15 13 20 20 H 1.48503 * 109.46602 * 239.99847 * 17 15 13 21 21 H 1.08993 * 109.47569 * 205.66908 * 1 2 3 22 22 H 1.08999 * 109.47064 * 325.67656 * 1 2 3 23 23 H 1.09004 * 109.46876 * 85.66918 * 1 2 3 24 24 H 1.08999 * 117.49432 * 359.97438 * 4 2 1 25 25 H 1.08995 * 117.50018 * 214.97284 * 4 2 1 26 26 H 1.09001 * 109.47002 * 128.62093 * 6 5 4 27 27 H 1.08993 * 109.46955 * 248.62531 * 6 5 4 28 28 H 1.09000 * 109.47050 * 8.62359 * 6 5 4 29 29 H 1.00903 * 110.99969 * 235.23934 * 7 5 4 30 30 H 1.09003 * 109.47295 * 299.99651 * 8 7 5 31 31 H 1.08999 * 109.47438 * 60.00281 * 8 7 5 32 32 H 0.97001 * 119.99999 * 359.97438 * 11 9 8 33 33 H 1.09003 * 109.46555 * 299.99974 * 12 11 9 34 34 H 1.08999 * 109.46735 * 59.99720 * 12 11 9 35 35 H 0.96994 * 120.00023 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1209 0.7647 5 6 2.2365 -1.1208 -0.7653 6 6 1.3588 -2.1561 -1.4717 7 7 3.4961 -0.7891 -1.4443 8 6 4.0503 -1.9645 -2.1293 9 6 5.3395 -1.5865 -2.8121 10 8 5.7559 -0.4500 -2.7354 11 7 6.0303 -2.5117 -3.5074 12 6 7.2838 -2.1444 -4.1708 13 6 7.8523 -3.3501 -4.8736 14 1 7.3321 -4.2957 -4.8301 15 6 9.0370 -3.2466 -5.5712 16 7 9.6707 -2.0953 -5.6238 17 14 9.7413 -4.7410 -6.4430 18 1 8.8438 -5.9053 -6.2327 19 1 9.8542 -4.4586 -7.8965 20 1 11.0860 -5.0472 -5.8922 21 1 -0.3634 -0.9262 0.4451 22 1 -0.3633 0.8487 0.5795 23 1 -0.3633 0.0776 -1.0248 24 1 1.6119 -1.8584 1.2683 25 1 3.1720 -0.8750 1.2677 26 1 0.7292 -1.6569 -2.2082 27 1 1.9922 -2.8886 -1.9718 28 1 0.7298 -2.6604 -0.7380 29 1 3.3691 -0.0221 -2.0876 30 1 4.2429 -2.7523 -1.4010 31 1 3.3370 -2.3223 -2.8717 32 1 5.6979 -3.4209 -3.5679 33 1 7.0920 -1.3565 -4.8992 34 1 7.9967 -1.7867 -3.4279 35 1 10.5039 -2.0224 -6.1149 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704255548.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:44 Heat of formation + Delta-G solvation = -21.024651 kcal Electronic energy + Delta-G solvation = -15234.196782 eV Core-core repulsion = 12653.601445 eV Total energy + Delta-G solvation = -2580.595336 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.32103 -38.28801 -34.25401 -33.60955 -32.29193 -28.95013 -28.22581 -27.61618 -25.51099 -22.42477 -21.08049 -19.63674 -19.08887 -17.36320 -16.24001 -15.60826 -15.31633 -14.98115 -14.56749 -14.01102 -13.79262 -13.58990 -13.21213 -12.82354 -12.73591 -12.26066 -12.13830 -11.91422 -11.87267 -11.46888 -11.35573 -10.94853 -10.89360 -10.31464 -10.21472 -9.72916 -9.37208 -9.01652 -8.73223 -8.32272 -7.85274 -6.16111 -4.22994 3.23727 3.30601 3.33724 3.40184 3.58413 3.76146 4.28695 4.47286 4.63306 4.71664 4.94966 5.14851 5.19948 5.24958 5.38642 5.49008 5.53218 5.61349 5.64534 5.70828 5.73405 5.80070 5.91443 6.01510 6.22324 7.01542 7.33464 7.40828 7.46835 7.53448 7.68527 7.98018 8.64901 8.79774 9.13361 9.43818 10.94194 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.070533 B = 0.004268 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.882672 B = 6558.452988 C = 6779.658339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.147 4.147 3 H 0.108 0.892 4 C -0.157 4.157 5 C 0.036 3.964 6 C -0.146 4.146 7 N -0.635 5.635 8 C 0.040 3.960 9 C 0.496 3.504 10 O -0.545 6.545 11 N -0.714 5.714 12 C 0.250 3.750 13 C -0.542 4.542 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.352 0.648 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.390 0.610 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.364 -1.029 8.887 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.165 4.165 3 H 0.126 0.874 4 C -0.195 4.195 5 C -0.056 4.056 6 C -0.205 4.205 7 N -0.266 5.266 8 C -0.092 4.092 9 C 0.280 3.720 10 O -0.423 6.423 11 N -0.363 5.363 12 C 0.129 3.871 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.110 0.890 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.173 0.827 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.222 0.778 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.461 -0.190 9.390 18.952 hybrid contribution -0.161 -1.291 -1.292 1.833 sum -16.622 -1.481 8.099 18.549 Atomic orbital electron populations 1.21355 0.92946 1.01784 1.01695 1.22537 0.94683 0.95043 1.04285 0.87422 1.23330 1.02268 1.00466 0.93433 1.21595 0.91076 0.99538 0.93416 1.21841 0.99347 0.98498 1.00784 1.60004 1.23878 1.07570 1.35196 1.21908 0.94869 0.94590 0.97855 1.20390 0.85788 0.86104 0.79750 1.90662 1.69826 1.20316 1.61483 1.46439 1.25988 1.12220 1.51697 1.19098 0.79367 0.96435 0.92184 1.21270 1.07668 0.95901 1.33247 0.91854 1.24964 0.96524 0.96409 0.96194 1.69988 1.16893 1.24067 1.41333 0.86357 0.78992 0.82280 0.79255 1.19636 1.20804 1.20788 0.92572 0.92195 0.92343 0.89032 0.88234 0.92188 0.91283 0.91816 0.82724 0.88540 0.92262 0.77797 0.95606 0.95523 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.21 37.15 0.34 -0.61 16 2 C -0.15 -1.48 6.33 -90.62 -0.57 -2.05 16 3 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.16 -1.66 9.75 -26.73 -0.26 -1.92 16 5 C 0.04 0.41 2.80 -131.60 -0.37 0.04 16 6 C -0.15 -1.38 8.51 37.16 0.32 -1.07 16 7 N -0.63 -9.21 6.33 -101.22 -0.64 -9.85 16 8 C 0.04 0.59 5.18 -4.98 -0.03 0.56 16 9 C 0.50 10.05 7.87 -10.99 -0.09 9.96 16 10 O -0.54 -13.41 16.20 5.56 0.09 -13.32 16 11 N -0.71 -15.17 5.55 -61.47 -0.34 -15.52 16 12 C 0.25 6.71 5.43 -5.19 -0.03 6.69 16 13 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 14 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 17 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H 0.06 0.40 7.78 -51.93 -0.40 0.00 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.45 8.02 -51.93 -0.42 0.03 16 24 H 0.09 0.82 7.96 -51.93 -0.41 0.40 16 25 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.06 0.54 8.02 -51.93 -0.42 0.12 16 27 H 0.07 0.66 5.60 -51.93 -0.29 0.37 16 28 H 0.06 0.52 7.78 -51.93 -0.40 0.12 16 29 H 0.35 5.31 8.52 -39.29 -0.33 4.97 16 30 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.06 0.75 6.35 -51.93 -0.33 0.42 16 32 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -31.94 295.14 -7.25 -39.19 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.42 Total: 6.59 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.10 Total: -1.89 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.25 Total: -50.92 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.09 Total: -13.32 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.94 -7.25 -39.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704255548.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.165 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds