Wall clock time and date at job start Mon Mar 30 2020 02:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 H 1.09008 * 109.47189 * 54.99890 * 3 2 1 5 5 C 1.52994 * 109.47400 * 175.00141 * 3 2 1 6 6 N 1.46505 * 109.47040 * 295.00391 * 3 2 1 7 7 C 1.34780 * 119.99641 * 155.00314 * 6 3 2 8 8 O 1.21579 * 120.00207 * 359.97438 * 7 6 3 9 9 N 1.34783 * 119.99627 * 179.97438 * 7 6 3 10 10 C 1.37191 * 119.99587 * 180.26942 * 9 7 6 11 11 H 1.07997 * 119.99586 * 223.95365 * 10 9 7 12 12 C 1.38878 * 119.99838 * 43.96022 * 10 9 7 13 13 N 1.31471 * 120.00146 * 19.31208 * 12 10 9 14 14 Si 1.86796 * 119.99539 * 199.31684 * 12 10 9 15 15 H 1.48496 * 109.47327 * 59.99934 * 14 12 10 16 16 H 1.48500 * 109.47266 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47587 * 299.99627 * 14 12 10 18 18 C 1.46501 * 119.99816 * 359.97438 * 9 7 6 19 19 C 1.52998 * 117.49303 * 183.36462 * 18 9 7 20 20 C 1.53008 * 117.49319 * 114.70751 * 18 9 7 21 21 H 1.09003 * 109.47435 * 59.99350 * 1 2 3 22 22 H 1.09000 * 109.47578 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46780 * 299.99853 * 1 2 3 24 24 H 1.08999 * 109.46780 * 240.00147 * 2 1 3 25 25 H 1.08994 * 109.46971 * 120.00387 * 2 1 3 26 26 H 1.09008 * 109.47154 * 59.99729 * 5 3 2 27 27 H 1.09000 * 109.47706 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.47442 * 300.00564 * 5 3 2 29 29 H 0.96997 * 120.00350 * 334.99343 * 6 3 2 30 30 H 0.97006 * 119.99838 * 174.93202 * 13 12 10 31 31 H 1.08998 * 115.55179 * 329.04101 * 18 9 7 32 32 H 1.08999 * 117.50257 * 0.02562 * 19 18 9 33 33 H 1.09003 * 117.49443 * 145.02510 * 19 18 9 34 34 H 1.09003 * 117.49289 * 214.97475 * 20 18 9 35 35 H 1.08994 * 117.50252 * 359.97332 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5257 3.4385 -1.2995 8 8 1.7326 4.1045 -0.3036 9 7 1.1695 4.0411 -2.4513 10 6 1.0459 5.4066 -2.5013 11 1 0.2016 5.8542 -3.0042 12 6 2.0067 6.2130 -1.9052 13 7 3.1973 5.7260 -1.6337 14 14 1.6071 7.9896 -1.4891 15 1 0.4652 8.0312 -0.5407 16 1 2.7922 8.6303 -0.8644 17 1 1.2461 8.7198 -2.7307 18 6 0.9208 3.2386 -3.6514 19 6 0.5970 3.9862 -4.9464 20 6 -0.5047 3.2224 -4.2074 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.9994 0.9052 -0.7162 27 1 3.9282 2.4720 0.1261 28 1 3.8533 0.9569 1.0570 29 1 1.4871 1.5662 -2.0463 30 1 3.8913 6.3075 -1.2856 31 1 1.5029 2.3207 -3.7322 32 1 0.5696 5.0751 -4.9056 33 1 0.9659 3.5599 -5.8793 34 1 -0.8599 2.2939 -4.6543 35 1 -1.2573 3.8084 -3.6800 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706780383.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:47 Heat of formation + Delta-G solvation = 3.701427 kcal Electronic energy + Delta-G solvation = -16585.522904 eV Core-core repulsion = 14005.999771 eV Total energy + Delta-G solvation = -2579.523133 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.92839 -36.71863 -35.30415 -32.65443 -31.55305 -30.43535 -28.95339 -24.80525 -23.32599 -21.68683 -21.31005 -20.52882 -19.18260 -17.68722 -15.99147 -15.35498 -14.71153 -14.24929 -13.88780 -13.75724 -13.26921 -13.14415 -12.88657 -12.76914 -11.75896 -11.73619 -11.38441 -11.08544 -10.98296 -10.83597 -10.78643 -10.71218 -10.50789 -10.20638 -10.13653 -9.88581 -9.68938 -8.65081 -8.12075 -7.84624 -6.92733 -5.97012 -3.70078 3.37210 3.44589 3.48536 4.09096 4.52286 4.55540 5.05039 5.11817 5.20985 5.36259 5.44891 5.53481 5.62672 5.84667 5.88639 5.93571 6.00340 6.11270 6.17243 6.18494 6.26814 6.28768 6.43479 6.49381 6.66875 6.79116 6.90837 6.99171 7.68678 7.75097 8.02946 8.64333 9.27215 9.56255 9.87939 10.62166 11.12853 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.010646 C = 0.008364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.843007 B = 2629.391082 C = 3346.707094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.166 3.834 4 H 0.078 0.922 5 C -0.161 4.161 6 N -0.759 5.759 7 C 0.692 3.308 8 O -0.574 6.574 9 N -0.448 5.448 10 C -0.340 4.340 11 H 0.074 0.926 12 C 0.075 3.925 13 N -0.835 5.835 14 Si 0.911 3.089 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.280 1.280 18 C 0.081 3.919 19 C -0.173 4.173 20 C -0.210 4.210 21 H 0.058 0.942 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.380 0.620 30 H 0.261 0.739 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.015 -10.032 -1.597 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.059 3.941 4 H 0.097 0.903 5 C -0.220 4.220 6 N -0.418 5.418 7 C 0.395 3.605 8 O -0.450 6.450 9 N -0.173 5.173 10 C -0.467 4.467 11 H 0.091 0.909 12 C -0.135 4.135 13 N -0.468 5.468 14 Si 0.739 3.261 15 H -0.201 1.201 16 H -0.214 1.214 17 H -0.206 1.206 18 C -0.026 4.026 19 C -0.211 4.211 20 C -0.249 4.249 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.213 0.787 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.674 -9.451 -0.679 9.845 hybrid contribution -0.061 0.580 -0.311 0.661 sum -2.734 -8.871 -0.990 9.335 Atomic orbital electron populations 1.21735 0.95698 1.00636 1.02572 1.21813 0.96303 0.96609 1.01922 1.20519 0.93868 0.91350 0.88363 0.90342 1.22196 0.96741 1.02985 1.00049 1.45337 1.77935 1.06424 1.12076 1.15852 0.80230 0.80230 0.84177 1.90729 1.56925 1.63057 1.34288 1.41933 1.67292 1.04894 1.03156 1.18574 1.07757 0.78864 1.41527 0.90864 1.25209 0.94022 0.98581 0.95705 1.69859 1.01669 1.35800 1.39472 0.86312 0.77964 0.83310 0.78537 1.20117 1.21385 1.20557 1.21527 0.95711 0.96484 0.88916 1.23043 1.02594 1.00895 0.94561 1.23340 0.94022 1.01776 1.05810 0.92252 0.93402 0.92804 0.92091 0.91325 0.93467 0.91342 0.93183 0.78723 0.92916 0.88797 0.87476 0.89997 0.90031 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.80 37.16 0.36 -1.55 16 2 C -0.13 -1.69 5.47 -26.73 -0.15 -1.84 16 3 C 0.17 2.94 2.57 -67.93 -0.17 2.76 16 4 H 0.08 1.58 7.58 -51.92 -0.39 1.19 16 5 C -0.16 -2.80 9.48 37.15 0.35 -2.45 16 6 N -0.76 -15.42 4.43 -58.67 -0.26 -15.68 16 7 C 0.69 18.12 7.54 -86.91 -0.66 17.46 16 8 O -0.57 -17.49 13.79 5.30 0.07 -17.42 16 9 N -0.45 -11.54 2.84 -113.04 -0.32 -11.87 16 10 C -0.34 -9.55 7.93 -14.92 -0.12 -9.67 16 11 H 0.07 1.99 7.26 -52.49 -0.38 1.61 16 12 C 0.08 2.18 4.35 -17.47 -0.08 2.10 16 13 N -0.83 -25.45 11.81 55.49 0.66 -24.79 16 14 Si 0.91 22.64 29.60 -169.99 -5.03 17.61 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.08 1.65 5.83 -67.93 -0.40 1.25 16 19 C -0.17 -3.21 9.80 -26.69 -0.26 -3.47 16 20 C -0.21 -3.67 10.36 -26.69 -0.28 -3.95 16 21 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.38 6.75 6.46 -40.82 -0.26 6.49 16 30 H 0.26 7.67 8.32 -40.82 -0.34 7.33 16 31 H 0.09 1.72 6.79 -51.93 -0.35 1.37 16 32 H 0.11 2.21 6.72 -51.93 -0.35 1.86 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 289.22 15.07 4.36 4.36 Total: -1.00 -33.25 289.22 -7.42 -40.67 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -5.50 Total: 6.47 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.39 Total: 0.65 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.07 Total: -52.34 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.07 Total: -17.42 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.25 -7.42 -40.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706780383.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.368 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds