Wall clock time and date at job start Mon Mar 30 2020 02:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 H 1.09008 * 109.47189 * 54.99890 * 3 2 1 5 5 C 1.52994 * 109.47400 * 175.00141 * 3 2 1 6 6 N 1.46505 * 109.47040 * 295.00391 * 3 2 1 7 7 C 1.34780 * 119.99641 * 155.00314 * 6 3 2 8 8 O 1.21579 * 120.00207 * 359.97438 * 7 6 3 9 9 N 1.34783 * 119.99627 * 179.97438 * 7 6 3 10 10 C 1.37191 * 119.99587 * 180.26942 * 9 7 6 11 11 H 1.07997 * 119.99586 * 223.95365 * 10 9 7 12 12 C 1.38878 * 119.99838 * 43.96022 * 10 9 7 13 13 N 1.31471 * 120.00146 * 19.31208 * 12 10 9 14 14 Si 1.86796 * 119.99539 * 199.31684 * 12 10 9 15 15 H 1.48496 * 109.47327 * 59.99934 * 14 12 10 16 16 H 1.48500 * 109.47266 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47587 * 299.99627 * 14 12 10 18 18 C 1.46501 * 119.99816 * 359.97438 * 9 7 6 19 19 C 1.52998 * 117.49303 * 183.36462 * 18 9 7 20 20 C 1.53008 * 117.49319 * 114.70751 * 18 9 7 21 21 H 1.09003 * 109.47435 * 59.99350 * 1 2 3 22 22 H 1.09000 * 109.47578 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46780 * 299.99853 * 1 2 3 24 24 H 1.08999 * 109.46780 * 240.00147 * 2 1 3 25 25 H 1.08994 * 109.46971 * 120.00387 * 2 1 3 26 26 H 1.09008 * 109.47154 * 59.99729 * 5 3 2 27 27 H 1.09000 * 109.47706 * 180.02562 * 5 3 2 28 28 H 1.09002 * 109.47442 * 300.00564 * 5 3 2 29 29 H 0.96997 * 120.00350 * 334.99343 * 6 3 2 30 30 H 0.97006 * 119.99838 * 174.93202 * 13 12 10 31 31 H 1.08998 * 115.55179 * 329.04101 * 18 9 7 32 32 H 1.08999 * 117.50257 * 0.02562 * 19 18 9 33 33 H 1.09003 * 117.49443 * 145.02510 * 19 18 9 34 34 H 1.09003 * 117.49289 * 214.97475 * 20 18 9 35 35 H 1.08994 * 117.50252 * 359.97332 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6524 2.0975 -1.2518 7 6 1.5257 3.4385 -1.2995 8 8 1.7326 4.1045 -0.3036 9 7 1.1695 4.0411 -2.4513 10 6 1.0459 5.4066 -2.5013 11 1 0.2016 5.8542 -3.0042 12 6 2.0067 6.2130 -1.9052 13 7 3.1973 5.7260 -1.6337 14 14 1.6071 7.9896 -1.4891 15 1 0.4652 8.0312 -0.5407 16 1 2.7922 8.6303 -0.8644 17 1 1.2461 8.7198 -2.7307 18 6 0.9208 3.2386 -3.6514 19 6 0.5970 3.9862 -4.9464 20 6 -0.5047 3.2224 -4.2074 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.9994 0.9052 -0.7162 27 1 3.9282 2.4720 0.1261 28 1 3.8533 0.9569 1.0570 29 1 1.4871 1.5662 -2.0463 30 1 3.8913 6.3075 -1.2856 31 1 1.5029 2.3207 -3.7322 32 1 0.5696 5.0751 -4.9056 33 1 0.9659 3.5599 -5.8793 34 1 -0.8599 2.2939 -4.6543 35 1 -1.2573 3.8084 -3.6800 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706780383.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:47 Heat of formation + Delta-G solvation = -18.286954 kcal Electronic energy + Delta-G solvation = -16586.476392 eV Core-core repulsion = 14005.999771 eV Total energy + Delta-G solvation = -2580.476621 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.75719 -38.28199 -36.97420 -34.65824 -33.31707 -32.11640 -30.43553 -26.84314 -24.61040 -23.20889 -22.90476 -22.06968 -20.94825 -19.50831 -17.85745 -17.08467 -16.59355 -15.87556 -15.62171 -15.28365 -14.90043 -14.58638 -14.39375 -14.23920 -13.64656 -13.24342 -12.96728 -12.77070 -12.71474 -12.56516 -12.24108 -12.12335 -12.08214 -11.83450 -11.62303 -11.50955 -11.23904 -10.72589 -10.18236 -9.61714 -8.91657 -8.12694 -5.88107 1.35830 1.45706 1.48496 2.24868 2.65038 2.82178 3.17117 3.47047 3.66256 3.92070 4.14104 4.23144 4.29400 4.31833 4.44743 4.56360 4.73835 4.84179 4.90946 4.92583 5.01606 5.08411 5.13717 5.26192 5.33497 5.39413 5.49339 5.50213 5.53548 6.10467 6.15292 6.61519 7.18039 7.55586 7.93938 8.62462 8.96697 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.010646 C = 0.008364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.843007 B = 2629.391082 C = 3346.707094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.159 3.841 4 H 0.045 0.955 5 C -0.152 4.152 6 N -0.742 5.742 7 C 0.680 3.320 8 O -0.630 6.630 9 N -0.466 5.466 10 C -0.346 4.346 11 H 0.075 0.925 12 C 0.021 3.979 13 N -0.873 5.873 14 Si 0.969 3.031 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.255 1.255 18 C 0.048 3.952 19 C -0.169 4.169 20 C -0.180 4.180 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.039 0.961 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.014 0.986 28 H 0.080 0.920 29 H 0.395 0.605 30 H 0.255 0.745 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.125 0.875 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.906 -12.202 -2.899 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.054 3.946 4 H 0.063 0.937 5 C -0.211 4.211 6 N -0.401 5.401 7 C 0.383 3.617 8 O -0.510 6.510 9 N -0.191 5.191 10 C -0.474 4.474 11 H 0.093 0.907 12 C -0.185 4.185 13 N -0.508 5.508 14 Si 0.794 3.206 15 H -0.210 1.210 16 H -0.215 1.215 17 H -0.179 1.179 18 C -0.058 4.058 19 C -0.207 4.207 20 C -0.219 4.219 21 H 0.063 0.937 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.100 0.900 25 H 0.112 0.888 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.099 0.901 29 H 0.231 0.769 30 H 0.064 0.936 31 H 0.136 0.864 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.143 0.857 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.591 -11.666 -2.041 12.375 hybrid contribution 0.150 1.173 0.063 1.184 sum -3.441 -10.493 -1.978 11.219 Atomic orbital electron populations 1.21727 0.95450 1.02115 1.01229 1.21745 0.96377 0.92967 1.04164 1.20748 0.94051 0.93775 0.86059 0.93678 1.22105 0.96437 1.00084 1.02480 1.45111 1.76805 1.04541 1.13651 1.16213 0.79973 0.81791 0.83717 1.90671 1.59268 1.64802 1.36282 1.42089 1.67249 1.04810 1.04915 1.18831 1.07308 0.80527 1.40702 0.90742 1.26040 0.93967 1.02604 0.95877 1.69986 1.02549 1.36925 1.41347 0.85406 0.77105 0.79238 0.78850 1.21048 1.21543 1.17932 1.21841 0.98748 0.97267 0.87910 1.23098 1.02983 0.99562 0.95065 1.23336 0.91870 1.02876 1.03801 0.93705 0.90429 0.94135 0.89961 0.88818 0.91771 0.96716 0.90083 0.76947 0.93645 0.86443 0.90170 0.86489 0.85689 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.80 71.98 0.71 -2.72 16 2 C -0.11 -2.66 5.47 30.59 0.17 -2.50 16 3 C 0.16 5.59 2.57 44.99 0.12 5.70 16 4 H 0.04 1.88 7.58 -2.38 -0.02 1.87 16 5 C -0.15 -5.26 9.48 71.98 0.68 -4.57 16 6 N -0.74 -30.00 4.43 -457.80 -2.03 -32.03 16 7 C 0.68 36.54 7.54 179.05 1.35 37.89 16 8 O -0.63 -40.23 13.79 -3.96 -0.05 -40.28 16 9 N -0.47 -24.29 2.84 -629.81 -1.79 -26.08 16 10 C -0.35 -19.82 7.93 84.01 0.67 -19.15 16 11 H 0.07 4.12 7.26 -2.91 -0.02 4.10 16 12 C 0.02 1.24 4.35 84.90 0.37 1.61 16 13 N -0.87 -55.32 11.81 21.65 0.26 -55.07 16 14 Si 0.97 47.70 29.60 68.60 2.03 49.73 16 15 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 16 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 17 H -0.25 -11.40 7.11 99.48 0.71 -10.69 16 18 C 0.05 1.88 5.83 44.99 0.26 2.14 16 19 C -0.17 -5.90 9.80 30.62 0.30 -5.60 16 20 C -0.18 -5.76 10.36 30.62 0.32 -5.44 16 21 H 0.04 1.16 7.75 -2.39 -0.02 1.14 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.39 13.35 6.46 -92.71 -0.60 12.76 16 30 H 0.25 15.65 8.32 -92.70 -0.77 14.88 16 31 H 0.12 3.99 6.79 -2.39 -0.02 3.98 16 32 H 0.08 3.25 6.72 -2.39 -0.02 3.24 16 33 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.13 2.96 8.14 -2.39 -0.02 2.95 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -76.73 289.22 3.82 -72.91 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.47 Total: 23.46 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 4.94 Total: 7.36 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -3.56 Total: -113.17 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -0.05 Total: -40.28 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -76.73 3.82 -72.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706780383.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.627 kcal (2) G-P(sol) polarization free energy of solvation -76.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds