Wall clock time and date at job start Mon Mar 30 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 112.78170 * 2 1 4 4 C 1.53754 * 113.55298 * 130.85273 * 2 1 3 5 5 C 1.53497 * 83.26017 * 140.98538 * 4 2 1 6 6 N 1.47061 * 113.46758 * 229.21532 * 2 1 3 7 7 C 1.34781 * 136.05721 * 38.13163 * 6 2 1 8 8 O 1.21275 * 119.99676 * 359.63794 * 7 6 2 9 9 C 1.50703 * 119.99971 * 179.63033 * 7 6 2 10 10 H 1.09002 * 109.47083 * 320.00492 * 9 7 6 11 11 N 1.46898 * 109.47113 * 200.00293 * 9 7 6 12 12 C 1.53000 * 109.46801 * 80.00207 * 9 7 6 13 13 C 1.52997 * 109.47060 * 184.99876 * 12 9 7 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00362 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99850 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47052 * 89.99717 * 18 16 14 20 20 H 1.48495 * 109.47307 * 209.99656 * 18 16 14 21 21 H 1.48500 * 109.47143 * 330.00164 * 18 16 14 22 22 H 1.08995 * 109.47537 * 190.78666 * 1 2 3 23 23 H 1.09006 * 109.47014 * 310.78512 * 1 2 3 24 24 H 1.08997 * 109.47306 * 70.78097 * 1 2 3 25 25 H 1.09001 * 114.39245 * 27.42437 * 4 2 1 26 26 H 1.09005 * 114.27290 * 254.54203 * 4 2 1 27 27 H 1.08998 * 113.46774 * 218.98648 * 5 4 2 28 28 H 1.08998 * 113.46322 * 88.54411 * 5 4 2 29 29 H 1.00899 * 111.00057 * 300.00501 * 11 9 7 30 30 H 1.00902 * 110.99515 * 63.95638 * 11 9 7 31 31 H 1.09002 * 109.47398 * 305.00045 * 12 9 7 32 32 H 1.09001 * 109.47194 * 65.00225 * 12 9 7 33 33 H 1.09002 * 109.47153 * 300.00319 * 13 12 9 34 34 H 1.08998 * 109.47533 * 59.99948 * 13 12 9 35 35 H 0.96994 * 119.99814 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9521 1.0050 0.0000 4 6 2.1444 -0.9219 1.0661 5 6 3.1581 -1.2302 -0.0445 6 7 2.1156 -0.8812 -1.0214 7 6 1.8273 -1.2168 -2.2945 8 8 0.8579 -0.7372 -2.8432 9 6 2.7095 -2.1877 -3.0361 10 1 3.7535 -1.9863 -2.7962 11 7 2.5007 -2.0332 -4.4819 12 6 2.3572 -3.6172 -2.6198 13 6 3.3337 -4.5950 -3.2766 14 6 2.9864 -6.0031 -2.8671 15 1 2.1523 -6.1827 -2.2050 16 6 3.7328 -7.0621 -3.3386 17 7 3.4293 -8.2910 -2.9816 18 14 5.1741 -6.7517 -4.4856 19 1 6.4104 -6.5585 -3.6859 20 1 5.3467 -7.9166 -5.3902 21 1 4.9111 -5.5330 -5.2924 22 1 -0.3634 -1.0094 0.1923 23 1 -0.3633 0.6713 0.7782 24 1 -0.3634 0.3383 -0.9703 25 1 1.5165 -1.7680 1.3455 26 1 2.5662 -0.3970 1.9232 27 1 3.4552 -2.2782 -0.0824 28 1 4.0094 -0.5495 -0.0563 29 1 1.5396 -2.2148 -4.7299 30 1 2.7874 -1.1171 -4.7928 31 1 2.4266 -3.7076 -1.5358 32 1 1.3412 -3.8488 -2.9394 33 1 3.2643 -4.5047 -4.3606 34 1 4.3498 -4.3635 -2.9571 35 1 3.9547 -9.0360 -3.3130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706923335.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:39 Heat of formation + Delta-G solvation = -11.825240 kcal Electronic energy + Delta-G solvation = -15925.594533 eV Core-core repulsion = 13345.398113 eV Total energy + Delta-G solvation = -2580.196420 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.52804 -38.13018 -35.26985 -32.74771 -30.85653 -30.46975 -29.40603 -26.61832 -23.78338 -23.34942 -21.51931 -20.12613 -18.70016 -17.18735 -16.70483 -15.97536 -15.66702 -15.45557 -14.16369 -14.07625 -13.84983 -13.57159 -13.38289 -12.69209 -12.59497 -12.36546 -12.05050 -11.81416 -11.66532 -11.61712 -11.02023 -10.84476 -10.58939 -10.25066 -9.89179 -9.74649 -9.54699 -9.09633 -8.73099 -8.48785 -8.34860 -5.98621 -3.96136 2.74208 2.85948 3.36396 3.44347 3.52839 4.18059 4.52382 4.56670 4.81266 4.86849 4.91342 5.04531 5.24270 5.35685 5.37573 5.43845 5.45455 5.61333 5.71817 5.75873 5.89441 6.01589 6.22762 6.33856 6.51393 6.89383 7.29478 7.38215 7.60145 7.67647 7.77625 7.87759 8.26404 8.59199 9.06067 9.64503 11.14885 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.035471 B = 0.006501 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.190540 B = 4305.876572 C = 4615.528718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 H 0.088 0.912 4 C -0.152 4.152 5 C 0.094 3.906 6 N -0.642 5.642 7 C 0.513 3.487 8 O -0.552 6.552 9 C 0.080 3.920 10 H 0.095 0.905 11 N -0.810 5.810 12 C -0.085 4.085 13 C -0.004 4.004 14 C -0.521 4.521 15 H 0.069 0.931 16 C 0.066 3.934 17 N -0.907 5.907 18 Si 0.879 3.121 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.260 1.260 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.350 0.650 30 H 0.334 0.666 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.034 0.966 34 H 0.008 0.992 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.253 17.242 7.117 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 H 0.106 0.894 4 C -0.190 4.190 5 C -0.029 4.029 6 N -0.379 5.379 7 C 0.302 3.698 8 O -0.430 6.430 9 C -0.035 4.035 10 H 0.113 0.887 11 N -0.338 5.338 12 C -0.123 4.123 13 C -0.041 4.041 14 C -0.559 4.559 15 H 0.087 0.913 16 C -0.135 4.135 17 N -0.546 5.546 18 Si 0.706 3.294 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.184 1.184 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.164 0.836 30 H 0.146 0.854 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.026 0.974 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.252 16.630 6.443 17.836 hybrid contribution 0.186 0.843 -0.238 0.896 sum -0.065 17.473 6.205 18.543 Atomic orbital electron populations 1.21944 0.94167 1.02526 1.02836 1.22694 0.95392 0.94834 0.85025 0.89429 1.23573 0.98707 1.00413 0.96270 1.23003 0.92141 1.02657 0.85090 1.49964 1.30236 1.46049 1.11673 1.22272 0.86385 0.82100 0.79044 1.90637 1.29692 1.56194 1.66472 1.21796 0.98256 0.95810 0.87670 0.88699 1.59072 1.29256 1.34552 1.10958 1.21438 1.01370 0.89591 0.99930 1.19484 0.93452 0.93951 0.97248 1.21181 1.15739 0.89373 1.29580 0.91331 1.25010 0.97444 0.94976 0.96043 1.69924 1.40555 0.98566 1.45556 0.86778 0.82891 0.78212 0.81495 1.20503 1.21587 1.18430 0.92099 0.91792 0.91211 0.88477 0.89452 0.89321 0.89821 0.83612 0.85390 0.92313 0.92305 0.94812 0.97419 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.56 37.16 0.36 -1.40 16 2 C 0.12 1.31 4.68 -72.26 -0.34 0.97 16 3 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.15 -1.29 8.03 -26.08 -0.21 -1.50 16 5 C 0.09 0.95 8.41 -8.50 -0.07 0.88 16 6 N -0.64 -8.61 3.56 -177.28 -0.63 -9.24 16 7 C 0.51 8.46 7.22 -10.98 -0.08 8.38 16 8 O -0.55 -10.51 15.84 5.56 0.09 -10.42 16 9 C 0.08 1.35 2.98 -68.86 -0.21 1.15 16 10 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 11 N -0.81 -13.40 8.44 -5.65 -0.05 -13.45 16 12 C -0.08 -1.71 4.78 -26.73 -0.13 -1.83 16 13 C 0.00 -0.09 3.93 -27.89 -0.11 -0.20 16 14 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.91 -28.32 13.96 55.43 0.77 -27.54 16 18 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 22 H 0.06 0.73 7.99 -51.93 -0.41 0.32 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.95 7.28 -51.93 -0.38 0.57 16 25 H 0.10 0.89 8.02 -51.93 -0.42 0.48 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.97 7.70 -51.93 -0.40 0.57 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.35 5.90 8.58 -39.29 -0.34 5.56 16 30 H 0.33 4.79 9.06 -39.29 -0.36 4.43 16 31 H 0.06 1.14 7.70 -51.93 -0.40 0.74 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.03 0.84 6.81 -51.93 -0.35 0.49 16 34 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 290.62 15.07 4.38 4.38 Total: -1.00 -33.55 290.62 -6.90 -40.45 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.57 Total: 5.44 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.22 Total: -7.03 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.09 Total: -50.23 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.55 -6.90 -40.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706923335.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.623 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds