Wall clock time and date at job start Mon Mar 30 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 112.78170 * 2 1 4 4 C 1.53754 * 113.55298 * 130.85273 * 2 1 3 5 5 C 1.53497 * 83.26017 * 140.98538 * 4 2 1 6 6 N 1.47061 * 113.46758 * 229.21532 * 2 1 3 7 7 C 1.34781 * 136.05721 * 38.13163 * 6 2 1 8 8 O 1.21275 * 119.99676 * 359.63794 * 7 6 2 9 9 C 1.50703 * 119.99971 * 179.63033 * 7 6 2 10 10 H 1.09002 * 109.47083 * 320.00492 * 9 7 6 11 11 N 1.46898 * 109.47113 * 200.00293 * 9 7 6 12 12 C 1.53000 * 109.46801 * 80.00207 * 9 7 6 13 13 C 1.52997 * 109.47060 * 184.99876 * 12 9 7 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00362 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99850 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47052 * 89.99717 * 18 16 14 20 20 H 1.48495 * 109.47307 * 209.99656 * 18 16 14 21 21 H 1.48500 * 109.47143 * 330.00164 * 18 16 14 22 22 H 1.08995 * 109.47537 * 190.78666 * 1 2 3 23 23 H 1.09006 * 109.47014 * 310.78512 * 1 2 3 24 24 H 1.08997 * 109.47306 * 70.78097 * 1 2 3 25 25 H 1.09001 * 114.39245 * 27.42437 * 4 2 1 26 26 H 1.09005 * 114.27290 * 254.54203 * 4 2 1 27 27 H 1.08998 * 113.46774 * 218.98648 * 5 4 2 28 28 H 1.08998 * 113.46322 * 88.54411 * 5 4 2 29 29 H 1.00899 * 111.00057 * 300.00501 * 11 9 7 30 30 H 1.00902 * 110.99515 * 63.95638 * 11 9 7 31 31 H 1.09002 * 109.47398 * 305.00045 * 12 9 7 32 32 H 1.09001 * 109.47194 * 65.00225 * 12 9 7 33 33 H 1.09002 * 109.47153 * 300.00319 * 13 12 9 34 34 H 1.08998 * 109.47533 * 59.99948 * 13 12 9 35 35 H 0.96994 * 119.99814 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9521 1.0050 0.0000 4 6 2.1444 -0.9219 1.0661 5 6 3.1581 -1.2302 -0.0445 6 7 2.1156 -0.8812 -1.0214 7 6 1.8273 -1.2168 -2.2945 8 8 0.8579 -0.7372 -2.8432 9 6 2.7095 -2.1877 -3.0361 10 1 3.7535 -1.9863 -2.7962 11 7 2.5007 -2.0332 -4.4819 12 6 2.3572 -3.6172 -2.6198 13 6 3.3337 -4.5950 -3.2766 14 6 2.9864 -6.0031 -2.8671 15 1 2.1523 -6.1827 -2.2050 16 6 3.7328 -7.0621 -3.3386 17 7 3.4293 -8.2910 -2.9816 18 14 5.1741 -6.7517 -4.4856 19 1 6.4104 -6.5585 -3.6859 20 1 5.3467 -7.9166 -5.3902 21 1 4.9111 -5.5330 -5.2924 22 1 -0.3634 -1.0094 0.1923 23 1 -0.3633 0.6713 0.7782 24 1 -0.3634 0.3383 -0.9703 25 1 1.5165 -1.7680 1.3455 26 1 2.5662 -0.3970 1.9232 27 1 3.4552 -2.2782 -0.0824 28 1 4.0094 -0.5495 -0.0563 29 1 1.5396 -2.2148 -4.7299 30 1 2.7874 -1.1171 -4.7928 31 1 2.4266 -3.7076 -1.5358 32 1 1.3412 -3.8488 -2.9394 33 1 3.2643 -4.5047 -4.3606 34 1 4.3498 -4.3635 -2.9571 35 1 3.9547 -9.0360 -3.3130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706923335.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:39 Heat of formation + Delta-G solvation = -37.073923 kcal Electronic energy + Delta-G solvation = -15926.689398 eV Core-core repulsion = 13345.398113 eV Total energy + Delta-G solvation = -2581.291285 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.56515 -39.27599 -36.83096 -34.80217 -32.32744 -31.83483 -30.34391 -28.29595 -25.34017 -24.19718 -22.78267 -21.80439 -19.81342 -18.86250 -18.26391 -17.24151 -16.89898 -16.53202 -16.20966 -15.38048 -15.00684 -14.81662 -14.64545 -14.40731 -14.04384 -13.61576 -13.42530 -12.94886 -12.84169 -12.66515 -12.56199 -12.42980 -11.92404 -11.76508 -11.62815 -11.41767 -11.29989 -11.04398 -10.71905 -9.77299 -9.63923 -8.26062 -6.29716 1.38935 1.42855 1.50232 1.57012 1.84409 2.40960 3.10265 3.34638 3.48977 3.64526 3.97820 4.06003 4.08561 4.22360 4.23765 4.47031 4.49403 4.62546 4.74832 4.78650 4.86813 4.97687 5.03341 5.11455 5.20028 5.39565 5.45594 5.62393 5.71427 6.02580 6.30830 6.44215 6.69756 6.78265 7.06355 7.34941 8.90861 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.035471 B = 0.006501 C = 0.006065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.190540 B = 4305.876572 C = 4615.528718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.116 3.884 3 H 0.112 0.888 4 C -0.134 4.134 5 C 0.088 3.912 6 N -0.650 5.650 7 C 0.508 3.492 8 O -0.587 6.587 9 C 0.090 3.910 10 H 0.113 0.887 11 N -0.817 5.817 12 C -0.075 4.075 13 C 0.005 3.995 14 C -0.533 4.533 15 H 0.027 0.973 16 C 0.004 3.996 17 N -0.954 5.954 18 Si 0.952 3.048 19 H -0.262 1.262 20 H -0.288 1.288 21 H -0.247 1.247 22 H 0.044 0.956 23 H 0.093 0.907 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.125 0.875 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.345 0.655 30 H 0.348 0.652 31 H 0.061 0.939 32 H 0.036 0.964 33 H 0.028 0.972 34 H 0.022 0.978 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.745 19.328 7.724 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.014 3.986 3 H 0.130 0.870 4 C -0.172 4.172 5 C -0.034 4.034 6 N -0.385 5.385 7 C 0.297 3.703 8 O -0.468 6.468 9 C -0.026 4.026 10 H 0.131 0.869 11 N -0.346 5.346 12 C -0.113 4.113 13 C -0.033 4.033 14 C -0.571 4.571 15 H 0.045 0.955 16 C -0.192 4.192 17 N -0.595 5.595 18 Si 0.775 3.225 19 H -0.187 1.187 20 H -0.214 1.214 21 H -0.170 1.170 22 H 0.063 0.937 23 H 0.112 0.888 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.144 0.856 27 H 0.096 0.904 28 H 0.133 0.867 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.764 18.744 7.100 20.121 hybrid contribution -0.512 0.177 -0.308 0.623 sum 1.251 18.921 6.792 20.142 Atomic orbital electron populations 1.21918 0.95034 1.02116 1.02134 1.23050 0.94888 0.96077 0.84576 0.86992 1.23515 0.97460 0.99639 0.96574 1.23335 0.92789 1.02898 0.84336 1.50155 1.31428 1.45948 1.10995 1.22023 0.85905 0.82247 0.80166 1.90618 1.30925 1.57615 1.67669 1.21578 0.99287 0.93638 0.88065 0.86905 1.59059 1.29018 1.35656 1.10875 1.21203 0.99103 0.91236 0.99755 1.19351 0.94965 0.91952 0.97012 1.21533 1.14496 0.92247 1.28810 0.95465 1.26002 1.00799 0.94491 0.97903 1.70079 1.42340 0.99792 1.47296 0.85629 0.79146 0.78489 0.79229 1.18695 1.21364 1.17015 0.93712 0.88829 0.94169 0.89564 0.85645 0.90417 0.86735 0.84111 0.83865 0.92030 0.94514 0.95337 0.95989 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.56 71.98 0.69 -2.59 16 2 C 0.12 2.16 4.68 41.88 0.20 2.36 16 3 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.13 -1.84 8.03 31.02 0.25 -1.59 16 5 C 0.09 1.52 8.41 83.18 0.70 2.22 16 6 N -0.65 -16.26 3.56 -833.18 -2.97 -19.23 16 7 C 0.51 16.40 7.22 87.66 0.63 17.03 16 8 O -0.59 -22.50 15.84 -3.01 -0.05 -22.55 16 9 C 0.09 2.92 2.98 44.17 0.13 3.05 16 10 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 11 N -0.82 -26.23 8.44 -171.80 -1.45 -27.68 16 12 C -0.07 -3.00 4.78 30.59 0.15 -2.85 16 13 C 0.00 0.22 3.93 29.85 0.12 0.34 16 14 C -0.53 -31.32 9.66 25.60 0.25 -31.07 16 15 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 16 C 0.00 0.26 5.47 84.65 0.46 0.72 16 17 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 18 Si 0.95 45.03 27.47 68.60 1.88 46.91 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 21 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 22 H 0.04 1.07 7.99 -2.39 -0.02 1.05 16 23 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 24 H 0.04 1.09 7.28 -2.39 -0.02 1.08 16 25 H 0.09 1.40 8.02 -2.39 -0.02 1.39 16 26 H 0.13 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.08 1.53 7.70 -2.39 -0.02 1.51 16 28 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.35 11.67 8.58 -89.69 -0.77 10.90 16 30 H 0.35 9.47 9.06 -89.69 -0.81 8.66 16 31 H 0.06 2.40 7.70 -2.39 -0.02 2.38 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.03 1.38 6.81 -2.39 -0.02 1.37 16 34 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 35 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -74.33 290.62 0.73 -73.60 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -0.55 Total: 21.81 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 3.57 Total: -12.38 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -4.12 Total: -107.40 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -74.33 0.73 -73.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706923335.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.526 kcal (2) G-P(sol) polarization free energy of solvation -74.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds