Wall clock time and date at job start Mon Mar 30 2020 03:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.57316 * 2 1 4 4 C 1.53126 * 109.52038 * 239.84196 * 2 1 3 5 5 C 1.53034 * 109.27454 * 182.43766 * 4 2 1 6 6 N 1.46847 * 109.52486 * 59.18079 * 5 4 2 7 7 C 1.46848 * 111.19788 * 298.25416 * 6 5 4 8 8 C 1.53035 * 109.52142 * 61.74047 * 7 6 5 9 9 H 1.08994 * 109.50219 * 180.87675 * 8 7 6 10 10 C 1.50707 * 109.53535 * 60.77899 * 8 7 6 11 11 O 1.21276 * 120.00266 * 240.17357 * 10 8 7 12 12 N 1.34786 * 119.99466 * 60.17674 * 10 8 7 13 13 C 1.46507 * 119.99430 * 179.97438 * 12 10 8 14 14 C 1.50704 * 109.46613 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99935 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99870 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00097 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46959 * 60.00587 * 18 16 14 20 20 H 1.48507 * 109.47108 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47288 * 300.00329 * 18 16 14 22 22 H 1.09011 * 109.46940 * 180.15806 * 1 2 3 23 23 H 1.09003 * 109.46822 * 300.15507 * 1 2 3 24 24 H 1.09000 * 109.47582 * 60.16188 * 1 2 3 25 25 H 1.08997 * 109.50129 * 302.38068 * 4 2 1 26 26 H 1.09006 * 109.50177 * 62.49826 * 4 2 1 27 27 H 1.08999 * 109.45899 * 179.20018 * 5 4 2 28 28 H 1.09006 * 109.46754 * 299.15875 * 5 4 2 29 29 H 1.00897 * 110.99907 * 62.35214 * 6 5 4 30 30 H 1.09000 * 109.46321 * 301.72950 * 7 6 5 31 31 H 1.09002 * 109.46191 * 181.75540 * 7 6 5 32 32 H 0.96996 * 120.00370 * 359.97438 * 12 10 8 33 33 H 1.08999 * 109.47087 * 299.99817 * 13 12 10 34 34 H 1.08996 * 109.46690 * 60.00174 * 13 12 10 35 35 H 0.97002 * 120.00016 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7251 -1.2479 5 6 3.5708 -0.7751 -1.2117 6 7 4.0103 -1.4788 -0.0001 7 6 3.5709 -0.7751 1.2116 8 6 2.0418 -0.7250 1.2477 9 1 1.7163 -0.1890 2.1392 10 6 1.4921 -2.1280 1.2753 11 8 0.7628 -2.5112 0.3853 12 7 1.8110 -2.9568 2.2893 13 6 1.2762 -4.3205 2.3164 14 6 1.7809 -5.0336 3.5444 15 1 2.4343 -4.5220 4.2356 16 6 1.4077 -6.3386 3.7859 17 7 0.6117 -6.9614 2.9444 18 14 2.0327 -7.2224 5.3083 19 1 1.5882 -6.4917 6.5222 20 1 1.4907 -8.6047 5.3357 21 1 3.5165 -7.2735 5.2768 22 1 -0.3633 -1.0278 0.0028 23 1 -0.3633 0.5163 0.8886 24 1 -0.3634 0.5113 -0.8914 25 1 1.6446 -1.7400 -1.2675 26 1 1.7160 -0.1890 -2.1394 27 1 3.9377 -1.3032 -2.0918 28 1 3.9674 0.2402 -1.2061 29 1 3.6876 -2.4348 -0.0001 30 1 3.9674 0.2402 1.2058 31 1 3.9379 -1.3033 2.0916 32 1 2.3945 -2.6504 3.0010 33 1 0.1871 -4.2832 2.3393 34 1 1.6028 -4.8565 1.4253 35 1 0.3494 -7.8797 3.1141 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710675151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:08 Heat of formation + Delta-G solvation = -54.461792 kcal Electronic energy + Delta-G solvation = -16356.162598 eV Core-core repulsion = 13774.117318 eV Total energy + Delta-G solvation = -2582.045280 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28268 -37.11493 -34.42734 -32.96798 -32.41125 -30.90413 -27.55207 -26.64649 -23.72780 -22.45407 -22.11033 -20.62875 -19.23968 -16.87293 -16.10330 -15.35336 -15.19880 -15.09328 -14.46276 -14.25154 -13.81481 -13.53682 -13.31412 -12.45073 -12.30146 -12.00931 -11.80373 -11.78382 -11.57593 -11.04437 -11.01266 -10.96327 -10.78005 -10.58224 -10.30046 -10.13944 -9.42862 -8.74977 -8.72807 -8.26793 -7.88896 -6.18292 -4.25405 3.24490 3.28194 3.29492 3.30820 4.04976 4.35433 4.46707 4.76004 4.99062 5.10526 5.18018 5.23904 5.44594 5.45358 5.63298 5.70803 5.78140 5.89939 5.94775 5.98931 6.09579 6.24345 6.27628 6.62325 6.80140 7.11076 7.27917 7.41804 7.47667 7.48655 7.64582 7.95143 8.59818 8.75916 9.07819 9.41494 10.91781 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.042761 B = 0.006531 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.645499 B = 4285.997146 C = 4507.371006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.062 4.062 3 H 0.064 0.936 4 C -0.164 4.164 5 C 0.057 3.943 6 N -0.685 5.685 7 C 0.068 3.932 8 C -0.149 4.149 9 H 0.093 0.907 10 C 0.501 3.499 11 O -0.546 6.546 12 N -0.710 5.710 13 C 0.251 3.749 14 C -0.545 4.545 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.903 3.097 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.093 0.907 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.347 0.653 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.390 0.610 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.437 13.123 -3.772 14.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.081 4.081 3 H 0.083 0.917 4 C -0.203 4.203 5 C -0.073 4.073 6 N -0.314 5.314 7 C -0.063 4.063 8 C -0.172 4.172 9 H 0.111 0.889 10 C 0.286 3.714 11 O -0.426 6.426 12 N -0.358 5.358 13 C 0.130 3.870 14 C -0.583 4.583 15 H 0.080 0.920 16 C -0.139 4.139 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 H 0.112 0.888 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.112 0.888 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.166 0.834 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.222 0.778 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.458 12.902 -4.431 14.351 hybrid contribution -0.500 -0.526 1.254 1.449 sum 3.958 12.376 -3.176 13.376 Atomic orbital electron populations 1.22158 0.94806 1.04986 1.00091 1.20815 0.96412 0.97498 0.93396 0.91733 1.22526 0.96852 1.03762 0.97189 1.22023 0.93406 0.99016 0.92858 1.60675 1.62564 1.06529 1.01673 1.21995 0.90328 1.00057 0.93891 1.22201 0.98914 0.95403 1.00724 0.88857 1.20355 0.81620 0.86781 0.82615 1.90510 1.37781 1.76902 1.37438 1.46539 1.49451 1.15777 1.23989 1.19084 0.94684 0.75830 0.97391 1.21188 1.31214 0.98055 1.07825 0.91980 1.24942 0.94783 0.97193 0.97023 1.69961 1.33853 1.12382 1.36111 0.86478 0.79168 0.78657 0.82642 1.20088 1.21062 1.20014 0.88831 0.93863 0.93597 0.88827 0.92208 0.91052 0.91513 0.83416 0.90393 0.90205 0.77765 0.95676 0.95559 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 8.88 37.16 0.33 -2.04 16 2 C -0.06 -0.84 2.54 -90.50 -0.23 -1.07 16 3 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.16 -2.28 5.07 -26.65 -0.14 -2.41 16 5 C 0.06 0.72 6.55 -3.84 -0.03 0.69 16 6 N -0.69 -9.62 6.82 -113.82 -0.78 -10.40 16 7 C 0.07 0.86 5.97 -3.83 -0.02 0.84 16 8 C -0.15 -2.11 2.59 -91.69 -0.24 -2.34 16 9 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 10 C 0.50 9.43 5.56 -10.98 -0.06 9.37 16 11 O -0.55 -12.04 11.34 5.56 0.06 -11.97 16 12 N -0.71 -14.40 5.44 -61.46 -0.33 -14.74 16 13 C 0.25 6.50 5.43 -5.19 -0.03 6.47 16 14 C -0.54 -14.62 9.28 -34.44 -0.32 -14.93 16 15 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 18 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H 0.09 1.68 5.31 -51.92 -0.28 1.41 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 1.62 5.75 -51.93 -0.30 1.32 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.35 5.61 7.91 -39.29 -0.31 5.30 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.99 7.56 -51.93 -0.39 0.60 16 32 H 0.39 6.92 7.74 -40.82 -0.32 6.61 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 276.65 15.07 4.17 4.17 Total: -1.00 -29.54 276.65 -7.34 -36.88 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.35 Total: 9.26 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.83 Total: -3.76 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.37 Total: -50.33 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.06 Total: -11.97 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.54 -7.34 -36.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710675151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.579 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds