Wall clock time and date at job start Mon Mar 30 2020 03:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.57316 * 2 1 4 4 C 1.53126 * 109.52038 * 239.84196 * 2 1 3 5 5 C 1.53034 * 109.27454 * 182.43766 * 4 2 1 6 6 N 1.46847 * 109.52486 * 59.18079 * 5 4 2 7 7 C 1.46848 * 111.19788 * 298.25416 * 6 5 4 8 8 C 1.53035 * 109.52142 * 61.74047 * 7 6 5 9 9 H 1.08994 * 109.50219 * 180.87675 * 8 7 6 10 10 C 1.50707 * 109.53535 * 60.77899 * 8 7 6 11 11 O 1.21276 * 120.00266 * 240.17357 * 10 8 7 12 12 N 1.34786 * 119.99466 * 60.17674 * 10 8 7 13 13 C 1.46507 * 119.99430 * 179.97438 * 12 10 8 14 14 C 1.50704 * 109.46613 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99935 * 0.02562 * 14 13 12 16 16 C 1.37871 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99870 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00097 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46959 * 60.00587 * 18 16 14 20 20 H 1.48507 * 109.47108 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47288 * 300.00329 * 18 16 14 22 22 H 1.09011 * 109.46940 * 180.15806 * 1 2 3 23 23 H 1.09003 * 109.46822 * 300.15507 * 1 2 3 24 24 H 1.09000 * 109.47582 * 60.16188 * 1 2 3 25 25 H 1.08997 * 109.50129 * 302.38068 * 4 2 1 26 26 H 1.09006 * 109.50177 * 62.49826 * 4 2 1 27 27 H 1.08999 * 109.45899 * 179.20018 * 5 4 2 28 28 H 1.09006 * 109.46754 * 299.15875 * 5 4 2 29 29 H 1.00897 * 110.99907 * 62.35214 * 6 5 4 30 30 H 1.09000 * 109.46321 * 301.72950 * 7 6 5 31 31 H 1.09002 * 109.46191 * 181.75540 * 7 6 5 32 32 H 0.96996 * 120.00370 * 359.97438 * 12 10 8 33 33 H 1.08999 * 109.47087 * 299.99817 * 13 12 10 34 34 H 1.08996 * 109.46690 * 60.00174 * 13 12 10 35 35 H 0.97002 * 120.00016 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7251 -1.2479 5 6 3.5708 -0.7751 -1.2117 6 7 4.0103 -1.4788 -0.0001 7 6 3.5709 -0.7751 1.2116 8 6 2.0418 -0.7250 1.2477 9 1 1.7163 -0.1890 2.1392 10 6 1.4921 -2.1280 1.2753 11 8 0.7628 -2.5112 0.3853 12 7 1.8110 -2.9568 2.2893 13 6 1.2762 -4.3205 2.3164 14 6 1.7809 -5.0336 3.5444 15 1 2.4343 -4.5220 4.2356 16 6 1.4077 -6.3386 3.7859 17 7 0.6117 -6.9614 2.9444 18 14 2.0327 -7.2224 5.3083 19 1 1.5882 -6.4917 6.5222 20 1 1.4907 -8.6047 5.3357 21 1 3.5165 -7.2735 5.2768 22 1 -0.3633 -1.0278 0.0028 23 1 -0.3633 0.5163 0.8886 24 1 -0.3634 0.5113 -0.8914 25 1 1.6446 -1.7400 -1.2675 26 1 1.7160 -0.1890 -2.1394 27 1 3.9377 -1.3032 -2.0918 28 1 3.9674 0.2402 -1.2061 29 1 3.6876 -2.4348 -0.0001 30 1 3.9674 0.2402 1.2058 31 1 3.9379 -1.3033 2.0916 32 1 2.3945 -2.6504 3.0010 33 1 0.1871 -4.2832 2.3393 34 1 1.6028 -4.8565 1.4253 35 1 0.3494 -7.8797 3.1141 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710675151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:08 Heat of formation + Delta-G solvation = -77.052320 kcal Electronic energy + Delta-G solvation = -16357.142196 eV Core-core repulsion = 13774.117318 eV Total energy + Delta-G solvation = -2583.024878 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.62538 -38.49860 -36.21734 -34.53766 -33.95648 -32.14914 -29.31820 -27.99872 -25.28721 -24.02896 -23.15037 -22.01820 -20.77285 -18.62851 -17.56371 -17.04470 -16.61264 -16.51382 -16.04057 -15.46069 -15.06510 -14.95132 -14.68461 -14.12683 -14.04977 -13.49071 -13.12708 -13.03273 -12.89546 -12.69857 -12.66191 -12.24304 -12.10909 -12.05388 -11.74707 -11.51385 -11.19569 -10.78036 -10.25669 -9.75511 -9.35112 -8.29589 -6.46087 1.42466 1.46273 1.54378 1.78042 2.32454 2.61271 3.05344 3.37927 3.63333 3.84843 3.99608 4.17008 4.20585 4.45630 4.59792 4.62834 4.73207 4.81337 4.90323 4.96878 5.03778 5.09252 5.14515 5.20348 5.24936 5.43659 5.46585 5.62975 5.77673 5.87511 6.10972 6.24693 6.65350 6.94590 7.23840 7.54395 8.82168 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.042761 B = 0.006531 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.645499 B = 4285.997146 C = 4507.371006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.062 4.062 3 H 0.101 0.899 4 C -0.162 4.162 5 C 0.059 3.941 6 N -0.692 5.692 7 C 0.069 3.931 8 C -0.137 4.137 9 H 0.118 0.882 10 C 0.497 3.503 11 O -0.581 6.581 12 N -0.707 5.707 13 C 0.271 3.729 14 C -0.557 4.557 15 H 0.082 0.918 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.262 1.262 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.329 0.671 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.405 0.595 33 H -0.017 1.017 34 H -0.013 1.013 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.243 15.312 -2.431 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.080 4.080 3 H 0.119 0.881 4 C -0.201 4.201 5 C -0.070 4.070 6 N -0.319 5.319 7 C -0.061 4.061 8 C -0.160 4.160 9 H 0.136 0.864 10 C 0.285 3.715 11 O -0.463 6.463 12 N -0.357 5.357 13 C 0.148 3.852 14 C -0.595 4.595 15 H 0.100 0.900 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.187 1.187 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.145 0.855 30 H 0.129 0.871 31 H 0.101 0.899 32 H 0.240 0.760 33 H 0.001 0.999 34 H 0.005 0.995 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.289 15.149 -3.087 16.690 hybrid contribution -1.114 -1.166 0.737 1.773 sum 5.175 13.982 -2.350 15.093 Atomic orbital electron populations 1.22088 0.95921 1.02521 1.01364 1.20906 0.95487 0.99061 0.92588 0.88084 1.22450 0.97844 1.01508 0.98294 1.22088 0.92297 1.00216 0.92414 1.60740 1.62549 1.05775 1.02856 1.22148 0.88796 1.01717 0.93449 1.22245 1.00008 0.91460 1.02302 0.86384 1.21351 0.80563 0.88463 0.81131 1.90532 1.39147 1.78041 1.38554 1.46271 1.50040 1.13968 1.25408 1.18455 0.92221 0.78643 0.95887 1.21601 1.31268 0.98534 1.08073 0.89979 1.26040 0.94719 0.98206 1.00529 1.70129 1.35452 1.12843 1.38529 0.85241 0.78974 0.76973 0.78257 1.18697 1.21120 1.18651 0.93031 0.92740 0.92218 0.93133 0.90786 0.90998 0.88855 0.85492 0.87086 0.89897 0.75994 0.99877 0.99540 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.51 8.88 71.98 0.64 -3.88 16 2 C -0.06 -1.51 2.54 -10.71 -0.03 -1.54 16 3 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.16 -4.29 5.07 30.65 0.16 -4.13 16 5 C 0.06 1.36 6.55 86.32 0.57 1.93 16 6 N -0.69 -18.21 6.82 -514.00 -3.51 -21.72 16 7 C 0.07 1.53 5.97 86.32 0.52 2.05 16 8 C -0.14 -3.56 2.59 -11.49 -0.03 -3.59 16 9 H 0.12 2.55 8.14 -2.39 -0.02 2.54 16 10 C 0.50 18.99 5.56 87.66 0.49 19.48 16 11 O -0.58 -27.04 11.34 -3.02 -0.03 -27.08 16 12 N -0.71 -29.24 5.44 -466.75 -2.54 -31.78 16 13 C 0.27 14.76 5.43 85.63 0.46 15.22 16 14 C -0.56 -30.27 9.28 25.60 0.24 -30.03 16 15 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 16 C 0.00 0.26 5.46 84.65 0.46 0.72 16 17 N -0.93 -56.32 13.29 21.44 0.28 -56.03 16 18 Si 0.98 42.38 29.54 68.60 2.03 44.41 16 19 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 20 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 22 H 0.05 1.91 5.31 -2.38 -0.01 1.89 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.05 1.80 5.75 -2.39 -0.01 1.79 16 26 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.33 10.68 7.91 -89.70 -0.71 9.97 16 30 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.08 1.81 7.56 -2.39 -0.02 1.79 16 32 H 0.40 14.07 7.74 -92.71 -0.72 13.35 16 33 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 34 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -67.60 276.65 -0.64 -68.24 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.34 Total: 27.73 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 3.47 Total: -3.77 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -5.76 Total: -109.52 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.03 Total: -27.08 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -67.60 -0.64 -68.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710675151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.815 kcal (2) G-P(sol) polarization free energy of solvation -67.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds