Wall clock time and date at job start Mon Mar 30 2020 03:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 112.79024 * 2 1 4 4 C 1.53511 * 113.47402 * 229.18914 * 2 1 3 5 5 C 1.53521 * 83.57369 * 219.21263 * 4 2 1 6 6 H 1.09005 * 113.47417 * 271.25783 * 5 4 2 7 7 C 1.52998 * 113.47523 * 140.79558 * 5 4 2 8 8 N 1.47477 * 87.93123 * 26.02484 * 5 4 2 9 9 C 1.46903 * 110.99919 * 221.29611 * 8 5 4 10 10 C 1.50694 * 109.47066 * 265.97246 * 9 8 5 11 11 O 1.21283 * 120.00363 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99988 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 9 14 14 C 1.50698 * 109.47082 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99736 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00453 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99720 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00263 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46927 * 89.99576 * 18 16 14 20 20 H 1.48494 * 109.46891 * 209.99448 * 18 16 14 21 21 H 1.48498 * 109.47123 * 329.99502 * 18 16 14 22 22 H 1.09005 * 109.47078 * 289.19540 * 1 2 3 23 23 H 1.09002 * 109.46644 * 49.18681 * 1 2 3 24 24 H 1.08993 * 109.47156 * 169.18974 * 1 2 3 25 25 H 1.08993 * 114.17516 * 332.85597 * 4 2 1 26 26 H 1.09001 * 114.17046 * 105.37827 * 4 2 1 27 27 H 1.09002 * 109.47043 * 321.61628 * 7 5 4 28 28 H 1.08997 * 109.47380 * 81.62013 * 7 5 4 29 29 H 1.09003 * 109.46664 * 201.61647 * 7 5 4 30 30 H 1.08998 * 109.46809 * 145.97347 * 9 8 5 31 31 H 1.09002 * 109.47056 * 25.97088 * 9 8 5 32 32 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 33 33 H 1.09007 * 109.47196 * 299.99538 * 13 12 10 34 34 H 1.09006 * 109.47678 * 59.99732 * 13 12 10 35 35 H 0.96993 * 120.00028 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9522 1.0049 0.0000 4 6 2.1415 -0.9203 -1.0657 5 6 3.1572 -1.2395 0.0403 6 1 4.0137 -0.5653 0.0510 7 6 3.5631 -2.7139 0.0880 8 7 2.1175 -0.8841 1.0239 9 6 2.6851 -0.1030 2.1310 10 6 3.0517 -1.0284 3.2624 11 8 2.8587 -2.2211 3.1572 12 7 3.5932 -0.5304 4.3918 13 6 3.9440 -1.4293 5.4941 14 6 4.5264 -0.6281 6.6298 15 1 4.6256 0.4436 6.5393 16 6 4.9335 -1.2631 7.7839 17 7 4.8131 -2.5682 7.8939 18 14 5.6560 -0.2699 9.1914 19 1 4.5668 0.1571 10.1061 20 1 6.6302 -1.1058 9.9380 21 1 6.3452 0.9284 8.6490 22 1 -0.3633 0.3379 0.9706 23 1 -0.3633 0.6717 -0.7778 24 1 -0.3633 -1.0094 -0.1927 25 1 1.5077 -1.7615 -1.3459 26 1 2.5612 -0.3934 -1.9227 27 1 2.6927 -3.3371 -0.1173 28 1 4.3310 -2.9039 -0.6619 29 1 3.9547 -2.9511 1.0772 30 1 1.9494 0.6222 2.4786 31 1 3.5769 0.4206 1.7864 32 1 3.7465 0.4236 4.4764 33 1 3.0496 -1.9491 5.8378 34 1 4.6778 -2.1580 5.1493 35 1 5.0991 -3.0149 8.7059 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791576026.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:21 Heat of formation + Delta-G solvation = -11.728083 kcal Electronic energy + Delta-G solvation = -15671.043405 eV Core-core repulsion = 13090.851198 eV Total energy + Delta-G solvation = -2580.192207 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.50212 -38.21672 -34.07657 -32.31194 -31.30045 -31.23408 -27.73111 -27.03293 -24.82945 -22.27116 -21.36827 -19.65923 -19.55757 -17.12726 -16.25508 -15.72175 -15.32502 -14.87001 -14.22082 -14.01299 -13.88464 -13.71330 -12.78438 -12.71681 -12.43088 -12.00970 -11.92597 -11.64448 -11.54437 -11.40772 -11.11402 -10.94212 -10.87522 -10.59151 -10.28687 -10.17616 -9.36866 -9.06075 -8.70279 -8.60912 -7.80115 -6.14547 -4.21359 3.25102 3.30983 3.33436 3.47967 3.73099 4.26256 4.38321 4.51956 4.67638 5.10110 5.15319 5.21363 5.25306 5.33124 5.38781 5.55560 5.60600 5.66260 5.71667 5.82161 5.93589 5.99524 6.17207 6.19258 6.43783 6.68941 7.10932 7.36906 7.51807 7.56323 7.71589 8.00296 8.69644 8.83406 9.20972 9.45828 10.95734 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.052969 B = 0.005090 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.488833 B = 5499.442408 C = 5732.185999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.019 3.981 3 H 0.074 0.926 4 C -0.138 4.138 5 C 0.028 3.972 6 H 0.073 0.927 7 C -0.132 4.132 8 N -0.439 5.439 9 C -0.002 4.002 10 C 0.500 3.500 11 O -0.533 6.533 12 N -0.719 5.719 13 C 0.252 3.748 14 C -0.543 4.543 15 H 0.062 0.938 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.388 0.612 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 7.167 -15.987 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 H 0.092 0.908 4 C -0.176 4.176 5 C -0.081 4.081 6 H 0.091 0.909 7 C -0.189 4.189 8 N -0.162 5.162 9 C -0.134 4.134 10 C 0.284 3.716 11 O -0.410 6.410 12 N -0.368 5.368 13 C 0.131 3.869 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.220 0.780 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.749 5.608 -15.541 17.190 hybrid contribution 1.053 1.735 0.772 2.171 sum -3.695 7.343 -14.769 16.903 Atomic orbital electron populations 1.21604 0.93521 1.02250 1.01566 1.23376 0.96959 0.95988 0.92757 0.90785 1.23360 0.98370 0.99874 0.95999 1.23402 0.93984 0.98870 0.91885 0.90903 1.21594 1.00919 0.93843 1.02592 1.68866 1.18389 1.26649 1.02297 1.22642 1.00136 0.96308 0.94310 1.20213 0.78689 0.89227 0.83504 1.90646 1.53426 1.15884 1.81006 1.46461 1.62245 1.11551 1.16583 1.19054 0.95954 0.89362 0.82515 1.21238 1.42874 0.93997 0.99991 0.91981 1.24956 0.95541 0.94979 0.98551 1.69979 1.46466 1.08033 1.27837 0.86420 0.78921 0.79772 0.81820 1.20462 1.21005 1.19785 0.92446 0.92487 0.91868 0.88804 0.90957 0.92202 0.93095 0.91031 0.88726 0.91615 0.78012 0.95663 0.95694 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.99 37.16 0.37 -0.97 16 2 C 0.02 0.20 3.69 -71.43 -0.26 -0.06 16 3 H 0.07 0.72 7.91 -51.93 -0.41 0.31 16 4 C -0.14 -1.42 7.53 -26.20 -0.20 -1.62 16 5 C 0.03 0.36 3.72 -71.43 -0.27 0.10 16 6 H 0.07 0.88 7.42 -51.93 -0.39 0.50 16 7 C -0.13 -1.88 9.96 37.16 0.37 -1.51 16 8 N -0.44 -6.51 5.40 -229.80 -1.24 -7.75 16 9 C 0.00 -0.03 5.30 -4.98 -0.03 -0.06 16 10 C 0.50 10.35 7.90 -10.98 -0.09 10.26 16 11 O -0.53 -13.24 15.33 5.56 0.09 -13.16 16 12 N -0.72 -15.53 5.55 -61.47 -0.34 -15.87 16 13 C 0.25 6.83 5.43 -5.20 -0.03 6.80 16 14 C -0.54 -14.95 9.28 -34.44 -0.32 -15.27 16 15 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 18 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.68 7.97 -51.93 -0.41 0.27 16 25 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.85 7.97 -51.93 -0.41 0.44 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.27 7.05 -51.93 -0.37 0.90 16 30 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 31 H 0.07 0.85 7.30 -51.93 -0.38 0.47 16 32 H 0.39 7.15 8.32 -40.82 -0.34 6.81 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 293.31 15.07 4.42 4.42 Total: -1.00 -32.50 293.31 -7.51 -40.02 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.61 Total: 2.67 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.54 Total: -0.63 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.85 Total: -49.33 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.50 -7.51 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791576026.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.288 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds