Wall clock time and date at job start Mon Mar 30 2020 03:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 112.79024 * 2 1 4 4 C 1.53511 * 113.47402 * 229.18914 * 2 1 3 5 5 C 1.53521 * 83.57369 * 219.21263 * 4 2 1 6 6 H 1.09005 * 113.47417 * 271.25783 * 5 4 2 7 7 C 1.52998 * 113.47523 * 140.79558 * 5 4 2 8 8 N 1.47477 * 87.93123 * 26.02484 * 5 4 2 9 9 C 1.46903 * 110.99919 * 221.29611 * 8 5 4 10 10 C 1.50694 * 109.47066 * 265.97246 * 9 8 5 11 11 O 1.21283 * 120.00363 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99988 * 180.02562 * 10 9 8 13 13 C 1.46493 * 119.99864 * 179.72721 * 12 10 9 14 14 C 1.50698 * 109.47082 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99736 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00453 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99720 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00263 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46927 * 89.99576 * 18 16 14 20 20 H 1.48494 * 109.46891 * 209.99448 * 18 16 14 21 21 H 1.48498 * 109.47123 * 329.99502 * 18 16 14 22 22 H 1.09005 * 109.47078 * 289.19540 * 1 2 3 23 23 H 1.09002 * 109.46644 * 49.18681 * 1 2 3 24 24 H 1.08993 * 109.47156 * 169.18974 * 1 2 3 25 25 H 1.08993 * 114.17516 * 332.85597 * 4 2 1 26 26 H 1.09001 * 114.17046 * 105.37827 * 4 2 1 27 27 H 1.09002 * 109.47043 * 321.61628 * 7 5 4 28 28 H 1.08997 * 109.47380 * 81.62013 * 7 5 4 29 29 H 1.09003 * 109.46664 * 201.61647 * 7 5 4 30 30 H 1.08998 * 109.46809 * 145.97347 * 9 8 5 31 31 H 1.09002 * 109.47056 * 25.97088 * 9 8 5 32 32 H 0.97000 * 119.99339 * 0.02562 * 12 10 9 33 33 H 1.09007 * 109.47196 * 299.99538 * 13 12 10 34 34 H 1.09006 * 109.47678 * 59.99732 * 13 12 10 35 35 H 0.96993 * 120.00028 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9522 1.0049 0.0000 4 6 2.1415 -0.9203 -1.0657 5 6 3.1572 -1.2395 0.0403 6 1 4.0137 -0.5653 0.0510 7 6 3.5631 -2.7139 0.0880 8 7 2.1175 -0.8841 1.0239 9 6 2.6851 -0.1030 2.1310 10 6 3.0517 -1.0284 3.2624 11 8 2.8587 -2.2211 3.1572 12 7 3.5932 -0.5304 4.3918 13 6 3.9440 -1.4293 5.4941 14 6 4.5264 -0.6281 6.6298 15 1 4.6256 0.4436 6.5393 16 6 4.9335 -1.2631 7.7839 17 7 4.8131 -2.5682 7.8939 18 14 5.6560 -0.2699 9.1914 19 1 4.5668 0.1571 10.1061 20 1 6.6302 -1.1058 9.9380 21 1 6.3452 0.9284 8.6490 22 1 -0.3633 0.3379 0.9706 23 1 -0.3633 0.6717 -0.7778 24 1 -0.3633 -1.0094 -0.1927 25 1 1.5077 -1.7615 -1.3459 26 1 2.5612 -0.3934 -1.9227 27 1 2.6927 -3.3371 -0.1173 28 1 4.3310 -2.9039 -0.6619 29 1 3.9547 -2.9511 1.0772 30 1 1.9494 0.6222 2.4786 31 1 3.5769 0.4206 1.7864 32 1 3.7465 0.4236 4.4764 33 1 3.0496 -1.9491 5.8378 34 1 4.6778 -2.1580 5.1493 35 1 5.0991 -3.0149 8.7059 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791576026.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:21 Heat of formation + Delta-G solvation = -37.129891 kcal Electronic energy + Delta-G solvation = -15672.144910 eV Core-core repulsion = 13090.851198 eV Total energy + Delta-G solvation = -2581.293712 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.56565 -39.88181 -36.08577 -34.34235 -32.48625 -32.21474 -29.50223 -28.23364 -26.22409 -24.20727 -22.31461 -21.35258 -20.52721 -18.95723 -17.52957 -17.45636 -16.72952 -16.67728 -15.76836 -15.48846 -15.04832 -14.71933 -14.45550 -14.10679 -13.93872 -13.67222 -13.29105 -12.98982 -12.88185 -12.71541 -12.43503 -12.38756 -12.22788 -12.04223 -11.65041 -11.48613 -11.10293 -10.80727 -10.65710 -9.80316 -9.73277 -8.29994 -6.47175 1.42117 1.45024 1.56229 1.83791 2.28853 2.48985 3.04688 3.12493 3.55580 3.75527 3.98481 4.17074 4.26243 4.35670 4.37305 4.47915 4.55257 4.74749 4.82627 4.96259 5.02606 5.06721 5.11296 5.18853 5.22825 5.28978 5.46253 5.49541 5.62033 5.71697 5.84695 6.16639 6.64448 6.97600 7.22965 7.56820 8.82458 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.052969 B = 0.005090 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.488833 B = 5499.442408 C = 5732.185999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.023 3.977 3 H 0.099 0.901 4 C -0.121 4.121 5 C 0.018 3.982 6 H 0.087 0.913 7 C -0.129 4.129 8 N -0.480 5.480 9 C 0.013 3.987 10 C 0.493 3.507 11 O -0.582 6.582 12 N -0.713 5.713 13 C 0.269 3.731 14 C -0.556 4.556 15 H 0.084 0.916 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.987 3.013 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.254 1.254 22 H 0.047 0.953 23 H 0.083 0.917 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.407 0.593 33 H -0.018 1.018 34 H -0.016 1.016 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 10.319 -17.105 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.085 4.085 3 H 0.117 0.883 4 C -0.159 4.159 5 C -0.091 4.091 6 H 0.105 0.895 7 C -0.186 4.186 8 N -0.204 5.204 9 C -0.118 4.118 10 C 0.280 3.720 11 O -0.461 6.461 12 N -0.364 5.364 13 C 0.146 3.854 14 C -0.594 4.594 15 H 0.102 0.898 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.810 3.190 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.178 1.178 22 H 0.066 0.934 23 H 0.102 0.898 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.137 0.863 31 H 0.114 0.886 32 H 0.242 0.758 33 H 0.000 1.000 34 H 0.002 0.998 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.524 8.812 -16.698 19.415 hybrid contribution 0.940 0.673 1.053 1.564 sum -3.583 9.485 -15.645 18.643 Atomic orbital electron populations 1.21619 0.93169 1.02107 1.01965 1.23506 0.97225 0.96684 0.91114 0.88332 1.23284 0.96875 0.99673 0.96061 1.23555 0.94876 0.97709 0.92928 0.89476 1.21559 1.01071 0.95464 1.00554 1.68854 1.19633 1.28551 1.03323 1.22562 1.02083 0.94937 0.92233 1.21383 0.76913 0.89550 0.84168 1.90626 1.55029 1.18587 1.81908 1.46211 1.62583 1.11805 1.15838 1.18472 0.92942 0.89582 0.84380 1.21629 1.42679 0.95022 1.00057 0.89774 1.26107 0.95669 0.96059 1.01852 1.70150 1.47642 1.10388 1.28945 0.85127 0.78070 0.78290 0.77540 1.19561 1.20929 1.17803 0.93394 0.89843 0.93200 0.89310 0.87905 0.93079 0.90711 0.95550 0.86314 0.88611 0.75791 0.99958 0.99831 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.99 71.98 0.72 -1.60 16 2 C 0.02 0.43 3.69 42.19 0.16 0.59 16 3 H 0.10 1.41 7.91 -2.39 -0.02 1.39 16 4 C -0.12 -2.11 7.53 30.94 0.23 -1.87 16 5 C 0.02 0.44 3.72 42.19 0.16 0.60 16 6 H 0.09 1.85 7.42 -2.38 -0.02 1.83 16 7 C -0.13 -3.71 9.96 71.98 0.72 -2.99 16 8 N -0.48 -13.50 5.40 -880.97 -4.76 -18.25 16 9 C 0.01 0.38 5.30 85.55 0.45 0.83 16 10 C 0.49 20.73 7.90 87.65 0.69 21.42 16 11 O -0.58 -30.47 15.33 -3.04 -0.05 -30.52 16 12 N -0.71 -31.23 5.55 -466.78 -2.59 -33.82 16 13 C 0.27 15.31 5.43 85.63 0.46 15.77 16 14 C -0.56 -30.88 9.28 25.60 0.24 -30.65 16 15 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 16 C 0.00 0.14 5.46 84.65 0.46 0.61 16 17 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 18 Si 0.99 42.78 29.54 68.60 2.03 44.81 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 22 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 1.00 7.97 -2.39 -0.02 0.98 16 25 H 0.09 1.64 7.86 -2.39 -0.02 1.62 16 26 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.50 7.97 -2.39 -0.02 1.48 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.03 0.97 7.05 -2.39 -0.02 0.96 16 30 H 0.12 2.77 8.08 -2.39 -0.02 2.76 16 31 H 0.10 2.14 7.30 -2.39 -0.02 2.13 16 32 H 0.41 14.53 8.32 -92.71 -0.77 13.76 16 33 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 34 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -74.98 293.31 -0.50 -75.48 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.29 Total: 16.75 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 4.29 Total: 2.70 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -7.06 Total: -109.22 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.05 Total: -30.52 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.98 -0.50 -75.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791576026.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.348 kcal (2) G-P(sol) polarization free energy of solvation -74.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds