Wall clock time and date at job start Mon Mar 30 2020 03:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47222 * 2 1 4 4 C 1.53007 * 109.46788 * 240.00788 * 2 1 3 5 5 C 1.53004 * 109.46906 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47064 * 59.99773 * 5 4 2 7 7 C 1.52997 * 109.47391 * 300.00277 * 6 5 4 8 8 H 1.09002 * 109.47045 * 299.99718 * 7 6 5 9 9 N 1.46504 * 109.47351 * 180.02562 * 7 6 5 10 10 C 1.34774 * 119.99819 * 84.99130 * 9 7 6 11 11 O 1.21579 * 120.00510 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99549 * 179.97438 * 10 9 7 13 13 C 1.37195 * 119.99853 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00287 * 0.02562 * 13 12 10 15 15 C 1.38878 * 120.00094 * 179.72619 * 13 12 10 16 16 N 1.31479 * 119.99847 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00323 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46783 * 60.00137 * 17 15 13 19 19 H 1.48495 * 109.47289 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46865 * 300.00319 * 17 15 13 21 21 C 1.52995 * 109.47401 * 59.99826 * 7 6 5 22 22 H 1.08997 * 109.46538 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46894 * 299.99104 * 1 2 3 24 24 H 1.08998 * 109.47461 * 59.99589 * 1 2 3 25 25 H 1.08993 * 109.46940 * 60.00136 * 4 2 1 26 26 H 1.08991 * 109.46950 * 299.99373 * 4 2 1 27 27 H 1.09002 * 109.47194 * 300.00164 * 5 4 2 28 28 H 1.09000 * 109.47012 * 180.02562 * 5 4 2 29 29 H 1.09001 * 109.47403 * 179.97438 * 6 5 4 30 30 H 1.09002 * 109.46796 * 60.00148 * 6 5 4 31 31 H 0.96996 * 119.99617 * 264.99849 * 9 7 6 32 32 H 0.97005 * 120.00189 * 0.02562 * 12 10 9 33 33 H 0.96995 * 120.00038 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.47109 * 59.99932 * 21 7 6 35 35 H 1.08996 * 109.47160 * 180.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5700 -0.7206 -1.2498 6 6 4.0805 -1.4416 -0.0006 7 6 3.5705 -0.7206 1.2487 8 1 3.9335 0.3072 1.2487 9 7 4.0599 -1.4106 2.4448 10 6 5.2819 -1.1239 2.9356 11 8 5.9780 -0.2923 2.3861 12 7 5.7318 -1.7583 4.0363 13 6 6.9756 -1.4661 4.5363 14 1 7.5939 -0.7274 4.0482 15 6 7.4369 -2.1158 5.6738 16 7 6.6820 -3.0112 6.2712 17 14 9.1301 -1.7174 6.3550 18 1 9.1931 -0.2778 6.7136 19 1 9.3829 -2.5400 7.5651 20 1 10.1599 -2.0172 5.3280 21 6 2.0406 -0.7211 1.2491 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.6766 -0.2072 -2.1392 26 1 1.6767 -1.7487 -1.2495 27 1 3.9330 0.3072 -1.2498 28 1 3.9333 -1.2339 -2.1401 29 1 5.1705 -1.4416 -0.0010 30 1 3.7175 -2.4694 -0.0005 31 1 3.5044 -2.0739 2.8834 32 1 5.1763 -2.4216 4.4750 33 1 7.0044 -3.4652 7.0654 34 1 1.6776 -1.7489 1.2492 35 1 1.6773 -0.2070 2.1389 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885783022.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:29 Heat of formation + Delta-G solvation = -83.404324 kcal Electronic energy + Delta-G solvation = -15826.987473 eV Core-core repulsion = 13243.687151 eV Total energy + Delta-G solvation = -2583.300322 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.92637 -39.31134 -36.08243 -35.12085 -33.34559 -32.86444 -30.24118 -27.20562 -26.72318 -23.34628 -22.55615 -21.36106 -20.70631 -19.91340 -18.79199 -16.94317 -16.48654 -16.03904 -15.80792 -15.40435 -15.23499 -15.11648 -14.65253 -14.20296 -13.67215 -13.40005 -13.20217 -12.93507 -12.71427 -12.39757 -12.38460 -12.15418 -12.09332 -11.81737 -11.53423 -11.43299 -11.26940 -11.08506 -10.80312 -10.08678 -9.71291 -8.38829 -5.87313 1.42557 1.44743 1.54020 2.17717 2.40450 2.54668 3.31248 3.75039 3.85552 3.92983 4.12268 4.20998 4.26474 4.49110 4.54339 4.58315 4.71189 4.81397 4.90824 5.03838 5.07383 5.15513 5.18982 5.31275 5.37699 5.42665 5.44636 5.46666 5.61659 5.82968 5.88971 6.49855 6.89593 7.19627 7.77638 8.24890 8.80562 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.059763 B = 0.005323 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.407709 B = 5258.630214 C = 5486.834433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 H 0.063 0.937 4 C -0.108 4.108 5 C -0.113 4.113 6 C -0.125 4.125 7 C 0.167 3.833 8 H 0.050 0.950 9 N -0.741 5.741 10 C 0.656 3.344 11 O -0.668 6.668 12 N -0.599 5.599 13 C -0.318 4.318 14 H 0.077 0.923 15 C -0.020 4.020 16 N -0.932 5.932 17 Si 0.995 3.005 18 H -0.273 1.273 19 H -0.271 1.271 20 H -0.273 1.273 21 C -0.110 4.110 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.401 0.599 32 H 0.394 0.606 33 H 0.274 0.726 34 H 0.081 0.919 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 1.386 -11.392 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.165 4.165 7 C 0.061 3.939 8 H 0.068 0.932 9 N -0.398 5.398 10 C 0.357 3.643 11 O -0.554 6.554 12 N -0.240 5.240 13 C -0.447 4.447 14 H 0.095 0.905 15 C -0.218 4.218 16 N -0.574 5.574 17 Si 0.819 3.181 18 H -0.198 1.198 19 H -0.196 1.196 20 H -0.198 1.198 21 C -0.148 4.148 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.235 0.765 32 H 0.228 0.772 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.430 2.003 -11.685 17.177 hybrid contribution 0.668 -0.469 1.013 1.301 sum -11.762 1.534 -10.671 15.955 Atomic orbital electron populations 1.21772 0.93380 1.02449 1.02194 1.21092 0.96680 0.99171 0.93774 0.91822 1.21598 0.93792 1.01381 0.97721 1.21483 0.96949 1.00151 0.96499 1.21900 0.99162 1.00147 0.95247 1.20764 0.94755 0.95188 0.83150 0.93212 1.44964 1.16316 1.46635 1.31840 1.16195 0.82777 0.83202 0.82131 1.90678 1.59451 1.40808 1.64468 1.40971 1.17534 1.39992 1.25521 1.19502 0.93069 1.22437 1.09733 0.90484 1.25965 1.03358 0.96088 0.96373 1.69707 1.39016 1.27174 1.21475 0.84957 0.77257 0.78243 0.77641 1.19810 1.19570 1.19803 1.21820 0.91461 1.02372 0.99170 0.91948 0.92692 0.91570 0.90278 0.90969 0.92833 0.90836 0.95335 0.91134 0.76475 0.77239 0.91667 0.90040 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.19 71.98 0.66 -1.34 16 2 C -0.09 -1.64 2.72 -10.79 -0.03 -1.67 16 3 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.11 -1.87 5.20 30.60 0.16 -1.71 16 5 C -0.11 -2.58 5.92 30.60 0.18 -2.40 16 6 C -0.13 -3.78 5.49 30.59 0.17 -3.62 16 7 C 0.17 5.40 2.45 44.99 0.11 5.51 16 8 H 0.05 1.93 7.57 -2.39 -0.02 1.91 16 9 N -0.74 -28.34 5.08 -457.83 -2.33 -30.67 16 10 C 0.66 33.69 8.48 179.05 1.52 35.21 16 11 O -0.67 -39.63 15.58 -3.97 -0.06 -39.69 16 12 N -0.60 -32.52 5.29 -320.71 -1.70 -34.22 16 13 C -0.32 -18.85 9.68 84.01 0.81 -18.04 16 14 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 15 C -0.02 -1.10 5.50 84.90 0.47 -0.63 16 16 N -0.93 -52.29 13.05 21.65 0.28 -52.01 16 17 Si 1.00 44.59 29.55 68.60 2.03 46.61 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 C -0.11 -2.51 4.67 30.59 0.14 -2.37 16 22 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.40 12.92 8.62 -92.71 -0.80 12.12 16 32 H 0.39 20.31 7.91 -92.70 -0.73 19.58 16 33 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -69.58 286.48 1.96 -67.62 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.45 Total: 33.39 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 4.19 Total: 8.96 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -3.74 Total: -116.89 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.06 Total: -39.69 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.58 1.96 -67.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885783022.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.784 kcal (2) G-P(sol) polarization free energy of solvation -69.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds