Wall clock time and date at job start Mon Mar 30 2020 03:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47103 * 2 1 4 4 C 1.52999 * 109.46961 * 240.00608 * 2 1 3 5 5 C 1.53005 * 109.47159 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47452 * 59.99536 * 5 4 2 7 7 C 1.53002 * 109.46817 * 300.00239 * 6 5 4 8 8 H 1.09004 * 109.46733 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.47037 * 299.99555 * 7 6 5 10 10 C 1.34776 * 120.00390 * 275.00000 * 9 7 6 11 11 O 1.21581 * 119.99595 * 0.02562 * 10 9 7 12 12 N 1.34774 * 120.00217 * 180.02562 * 10 9 7 13 13 C 1.37184 * 120.00097 * 180.02562 * 12 10 9 14 14 H 1.07999 * 120.00217 * 0.02562 * 13 12 10 15 15 C 1.38875 * 120.00218 * 179.97438 * 13 12 10 16 16 N 1.31479 * 119.99898 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00371 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47048 * 90.00180 * 17 15 13 19 19 H 1.48502 * 109.47488 * 210.00564 * 17 15 13 20 20 H 1.48501 * 109.46856 * 330.00684 * 17 15 13 21 21 C 1.52997 * 109.47482 * 120.00247 * 2 1 3 22 22 H 1.09001 * 109.47066 * 299.99922 * 1 2 3 23 23 H 1.08996 * 109.47747 * 59.99588 * 1 2 3 24 24 H 1.09002 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47486 * 59.99547 * 4 2 1 26 26 H 1.09002 * 109.46716 * 299.99630 * 4 2 1 27 27 H 1.09002 * 109.46935 * 299.99411 * 5 4 2 28 28 H 1.09001 * 109.46812 * 179.97438 * 5 4 2 29 29 H 1.08993 * 109.47194 * 179.97438 * 6 5 4 30 30 H 1.09002 * 109.46695 * 59.99734 * 6 5 4 31 31 H 0.97001 * 119.99395 * 95.00922 * 9 7 6 32 32 H 0.97000 * 119.99604 * 0.02562 * 12 10 9 33 33 H 0.97000 * 119.99850 * 179.97438 * 16 15 13 34 34 H 1.09002 * 109.47153 * 59.99783 * 21 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5699 -0.7217 -1.2490 6 6 4.0795 -1.4433 0.0001 7 6 3.5695 -0.7221 1.2494 8 1 3.9322 -1.2365 2.1393 9 7 4.0584 0.6589 1.2497 10 6 5.2803 0.9411 1.7433 11 8 5.9771 0.0495 2.1878 12 7 5.7298 2.2117 1.7440 13 6 6.9738 2.4989 2.2459 14 1 7.5932 1.7068 2.6401 15 6 7.4372 3.8081 2.2462 16 7 6.6835 4.7723 1.7659 17 14 9.1315 4.1991 2.9290 18 1 10.1374 4.1059 1.8406 19 1 9.1342 5.5744 3.4892 20 1 9.4697 3.2277 4.0001 21 6 2.0400 -0.7213 1.2492 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6765 -0.2073 -2.1393 26 1 1.6765 -1.7488 -1.2493 27 1 3.9336 0.3058 -1.2488 28 1 3.9332 -1.2359 -2.1389 29 1 5.1694 -1.4441 0.0000 30 1 3.7157 -2.4709 -0.0002 31 1 3.5024 1.3702 0.8948 32 1 5.1737 2.9231 1.3897 33 1 7.0070 5.6868 1.7665 34 1 1.6767 -1.7490 1.2492 35 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885783025.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:39 Heat of formation + Delta-G solvation = -58.476198 kcal Electronic energy + Delta-G solvation = -16120.067712 eV Core-core repulsion = 13537.848354 eV Total energy + Delta-G solvation = -2582.219357 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.57587 -37.69679 -34.04753 -33.18860 -31.91824 -31.04455 -29.13544 -26.31649 -24.65862 -22.28638 -21.18628 -20.42976 -18.61309 -17.73559 -17.06848 -15.40874 -14.95989 -14.56205 -14.39895 -14.05104 -13.66530 -13.35074 -13.14399 -12.76015 -12.35768 -11.95005 -11.92308 -11.68153 -11.41599 -11.35285 -11.01525 -10.83175 -10.38348 -10.30369 -10.07660 -10.02169 -9.82964 -9.43571 -8.75685 -8.17601 -7.79874 -6.24348 -3.65787 3.28613 3.34329 3.40048 3.95277 4.42044 4.44301 4.78684 4.81906 4.87764 5.27774 5.35257 5.47346 5.55055 5.58465 5.61944 5.68727 5.77057 5.86112 5.88891 5.94805 6.03388 6.12574 6.20089 6.31800 6.41862 6.52853 6.59052 6.64759 7.48696 7.67070 7.79981 8.52814 8.89666 9.34230 9.79467 10.29095 10.95557 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.045210 B = 0.006154 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.184119 B = 4549.009477 C = 4747.911533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.130 4.130 7 C 0.171 3.829 8 H 0.081 0.919 9 N -0.754 5.754 10 C 0.658 3.342 11 O -0.628 6.628 12 N -0.591 5.591 13 C -0.281 4.281 14 H 0.100 0.900 15 C 0.015 3.985 16 N -0.914 5.914 17 Si 0.929 3.071 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.120 4.120 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.384 0.616 32 H 0.390 0.610 33 H 0.267 0.733 34 H 0.071 0.929 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.751 -7.802 -5.282 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.169 4.169 7 C 0.065 3.935 8 H 0.099 0.901 9 N -0.412 5.412 10 C 0.359 3.641 11 O -0.511 6.511 12 N -0.232 5.232 13 C -0.411 4.411 14 H 0.118 0.882 15 C -0.185 4.185 16 N -0.557 5.557 17 Si 0.757 3.243 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.196 1.196 21 C -0.158 4.158 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.218 0.782 32 H 0.223 0.777 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.047 -8.385 -4.865 14.697 hybrid contribution 0.289 1.066 -0.096 1.109 sum -10.758 -7.319 -4.961 13.925 Atomic orbital electron populations 1.21824 0.95463 1.01505 1.01520 1.21131 0.95104 0.99928 0.95116 0.91130 1.21587 0.95982 1.00179 0.97108 1.21478 0.94903 1.01535 0.97605 1.21934 1.01723 0.98302 0.94929 1.20481 0.91934 0.83060 0.98057 0.90105 1.45107 1.18147 1.08373 1.69576 1.15952 0.81611 0.84309 0.82217 1.90718 1.57754 1.46374 1.56304 1.40999 1.17778 1.04809 1.59619 1.19550 0.91737 0.93664 1.36158 0.88174 1.25140 0.99685 0.95233 0.98438 1.69643 1.37522 1.00658 1.47868 0.85867 0.81950 0.77482 0.78992 1.20682 1.21152 1.19644 1.21872 0.95089 1.01029 0.97819 0.92743 0.92897 0.92893 0.92422 0.92289 0.91604 0.92625 0.91234 0.92139 0.78213 0.77731 0.92303 0.91059 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.19 37.15 0.34 -1.00 16 2 C -0.09 -1.03 2.55 -90.63 -0.23 -1.26 16 3 H 0.07 0.84 6.51 -51.93 -0.34 0.50 16 4 C -0.11 -1.20 5.20 -26.73 -0.14 -1.34 16 5 C -0.12 -1.54 5.77 -26.73 -0.15 -1.70 16 6 C -0.13 -1.93 5.60 -26.73 -0.15 -2.08 16 7 C 0.17 2.71 2.78 -67.96 -0.19 2.52 16 8 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 9 N -0.75 -14.02 4.24 -58.70 -0.25 -14.27 16 10 C 0.66 16.20 8.48 -86.92 -0.74 15.47 16 11 O -0.63 -17.71 15.58 5.29 0.08 -17.63 16 12 N -0.59 -15.56 5.29 -15.34 -0.08 -15.64 16 13 C -0.28 -8.11 9.68 -14.92 -0.14 -8.26 16 14 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 15 C 0.01 0.41 5.50 -17.47 -0.10 0.31 16 16 N -0.91 -25.80 13.05 55.49 0.72 -25.08 16 17 Si 0.93 21.83 29.55 -169.99 -5.02 16.81 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 C -0.12 -1.45 4.88 -26.76 -0.13 -1.58 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.98 7.60 -51.93 -0.39 0.58 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.38 6.35 6.88 -40.82 -0.28 6.07 16 32 H 0.39 9.85 7.91 -40.82 -0.32 9.53 16 33 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 282.05 15.07 4.25 4.25 Total: -1.00 -31.49 282.05 -7.39 -38.88 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -5.47 Total: 11.60 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.63 Total: 1.08 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.39 Total: -55.00 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.08 Total: -17.63 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.49 -7.39 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885783025.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.597 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds