Wall clock time and date at job start Mon Mar 30 2020 03:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.40133 * 2 1 4 4 C 1.53017 * 109.40460 * 119.83133 * 2 1 3 5 5 C 1.53374 * 109.13513 * 182.98810 * 4 2 1 6 6 C 1.51425 * 108.11681 * 307.52985 * 5 4 2 7 7 N 1.27958 * 121.00559 * 229.12089 * 6 5 4 8 8 O 1.41593 * 120.00108 * 0.02562 * 7 6 5 9 9 C 1.51315 * 117.98697 * 49.10405 * 6 5 4 10 10 N 1.46797 * 109.40269 * 240.26533 * 2 1 3 11 11 C 1.46904 * 111.00021 * 50.41369 * 10 2 1 12 12 C 1.52994 * 109.47326 * 170.00308 * 11 10 2 13 13 C 1.50704 * 109.47290 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99487 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00003 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00193 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00098 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46865 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47488 * 119.99546 * 17 15 13 20 20 H 1.48500 * 109.46946 * 240.00062 * 17 15 13 21 21 H 1.09002 * 109.47153 * 300.16856 * 1 2 3 22 22 H 1.09001 * 109.46832 * 180.17047 * 1 2 3 23 23 H 1.09004 * 109.47261 * 60.17028 * 1 2 3 24 24 H 1.09002 * 109.52397 * 302.88472 * 4 2 1 25 25 H 1.08999 * 109.52883 * 63.01321 * 4 2 1 26 26 H 1.08991 * 109.73742 * 67.19061 * 5 4 2 27 27 H 1.09009 * 109.73170 * 187.88216 * 5 4 2 28 28 H 0.96703 * 114.00222 * 179.97438 * 8 7 6 29 29 H 1.09005 * 109.62568 * 69.43897 * 9 6 5 30 30 H 1.08997 * 109.62392 * 189.81593 * 9 6 5 31 31 H 1.08998 * 109.46992 * 290.00238 * 11 10 2 32 32 H 1.08999 * 109.47014 * 50.00387 * 11 10 2 33 33 H 1.09000 * 109.47544 * 299.99946 * 12 11 10 34 34 H 1.09003 * 109.47472 * 60.00139 * 12 11 10 35 35 H 0.96994 * 120.00249 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8921 1.0282 0.0000 4 6 2.0384 -0.7179 1.2520 5 6 3.5702 -0.6492 1.2839 6 6 4.0921 -1.1579 -0.0434 7 7 5.0209 -2.0367 -0.0934 8 8 5.5762 -2.5488 1.1042 9 6 3.4819 -0.5959 -1.3089 10 7 2.0176 -0.6867 -1.2023 11 6 1.3682 -0.1593 -2.4098 12 6 2.0713 -0.7134 -3.6505 13 6 1.4047 -0.1727 -4.8893 14 1 0.5639 0.4992 -4.8004 15 6 1.8682 -0.5360 -6.1359 16 7 2.8923 -1.3540 -6.2441 17 14 1.0423 0.1347 -7.6714 18 1 -0.0777 1.0281 -7.2808 19 1 2.0316 0.9009 -8.4710 20 1 0.5162 -0.9923 -8.4828 21 1 -0.3633 0.5165 0.8885 22 1 -0.3633 -1.0277 0.0031 23 1 -0.3634 0.5112 -0.8915 24 1 1.6333 -0.2326 2.1400 25 1 1.7197 -1.7601 1.2291 26 1 3.8893 0.3821 1.4340 27 1 3.9499 -1.2739 2.0925 28 1 6.2705 -3.2074 0.9657 29 1 3.7765 0.4471 -1.4255 30 1 3.8257 -1.1717 -2.1681 31 1 0.3209 -0.4612 -2.4204 32 1 1.4328 0.9288 -2.4112 33 1 3.1186 -0.4115 -3.6400 34 1 2.0068 -1.8015 -3.6492 35 1 3.2186 -1.6092 -7.1211 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885784160.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:16 Heat of formation + Delta-G solvation = -0.110303 kcal Electronic energy + Delta-G solvation = -15945.392552 eV Core-core repulsion = 13365.704130 eV Total energy + Delta-G solvation = -2579.688422 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.21992 -36.69370 -34.20072 -33.25236 -32.33600 -29.45486 -29.14035 -25.80343 -24.50178 -23.35827 -20.65307 -20.11925 -18.82307 -16.94485 -16.40504 -15.68472 -15.09273 -14.53114 -14.39671 -14.11412 -13.95854 -13.53069 -12.85043 -12.67200 -12.48564 -12.07773 -11.99918 -11.57241 -11.29771 -11.14841 -10.96151 -10.76900 -10.53226 -10.38982 -9.91128 -9.59586 -9.40393 -9.28449 -9.07652 -8.35759 -7.78280 -6.00618 -4.03392 2.20512 3.21169 3.31071 3.38721 3.42221 4.34234 4.51078 4.69139 4.92126 5.01467 5.30584 5.35563 5.46779 5.57334 5.67356 5.72167 5.84240 5.88063 6.05704 6.10294 6.25591 6.28228 6.32430 6.48820 6.50293 6.88108 6.92100 7.42337 7.53006 7.71810 7.83383 7.92516 8.02789 8.40689 9.03417 9.60646 11.10645 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.031685 B = 0.006667 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.488656 B = 4198.669632 C = 4967.242514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 H 0.039 0.961 4 C -0.103 4.103 5 C -0.118 4.118 6 C 0.147 3.853 7 N -0.332 5.332 8 O -0.424 6.424 9 C 0.107 3.893 10 N -0.531 5.531 11 C 0.064 3.936 12 C 0.017 3.983 13 C -0.521 4.521 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.399 0.601 29 H 0.059 0.941 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.020 0.980 34 H 0.026 0.974 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 2.025 14.190 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.034 4.034 3 H 0.057 0.943 4 C -0.142 4.142 5 C -0.158 4.158 6 C -0.046 4.046 7 N -0.076 5.076 8 O -0.329 6.329 9 C -0.021 4.021 10 N -0.257 5.257 11 C -0.062 4.062 12 C -0.020 4.020 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.246 0.754 29 H 0.077 0.923 30 H 0.131 0.869 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.038 0.962 34 H 0.045 0.955 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.278 1.290 13.818 13.881 hybrid contribution -0.007 1.062 -0.443 1.151 sum 0.270 2.352 13.375 13.583 Atomic orbital electron populations 1.21889 0.94206 1.02621 1.01671 1.21658 0.95705 0.95311 0.90752 0.94318 1.21617 0.93398 1.01984 0.97185 1.21328 0.97098 1.01918 0.95442 1.25456 0.90547 0.91057 0.97578 1.76196 1.11999 1.11620 1.07770 1.88367 1.57451 1.61573 1.25497 1.21128 0.88283 0.99491 0.93224 1.62149 1.03336 1.56948 1.03273 1.22398 0.98934 0.96200 0.88710 1.19282 0.95581 0.97260 0.89863 1.21188 1.15682 1.28271 0.90886 0.92641 1.24995 0.95065 0.95115 0.99130 1.69975 1.24999 1.34347 1.23771 0.86542 0.79433 0.78803 0.83241 1.19763 1.21061 1.20997 0.92739 0.91800 0.91818 0.91205 0.90891 0.90143 0.90036 0.75392 0.92327 0.86859 0.91063 0.95826 0.96197 0.95524 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.66 37.16 0.32 -1.57 16 2 C 0.07 1.06 2.35 -67.76 -0.16 0.90 16 3 H 0.04 0.54 8.13 -51.93 -0.42 0.12 16 4 C -0.10 -1.30 5.40 -26.53 -0.14 -1.45 16 5 C -0.12 -1.59 6.00 -27.33 -0.16 -1.76 16 6 C 0.15 2.42 6.69 -78.27 -0.52 1.90 16 7 N -0.33 -5.70 12.07 35.90 0.43 -5.26 16 8 O -0.42 -6.06 13.58 -11.47 -0.16 -6.21 16 9 C 0.11 1.91 4.85 -4.57 -0.02 1.89 16 10 N -0.53 -9.46 4.67 -227.61 -1.06 -10.52 16 11 C 0.06 1.29 4.15 -3.82 -0.02 1.28 16 12 C 0.02 0.44 4.23 -27.88 -0.12 0.32 16 13 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 17 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.87 6.50 -51.93 -0.34 0.54 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.10 6.97 -51.92 -0.36 0.74 16 28 H 0.40 3.80 9.28 45.56 0.42 4.23 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.11 2.32 6.22 -51.93 -0.32 2.00 16 31 H 0.07 1.43 6.84 -51.93 -0.35 1.07 16 32 H 0.02 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.02 0.52 6.33 -51.93 -0.33 0.19 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 282.75 15.07 4.26 4.26 Total: -1.00 -31.09 282.75 -6.67 -37.76 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.62 Total: 1.13 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: -1.24 Total: -11.71 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.11 Total: -41.64 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.16 Total: -6.21 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.09 -6.67 -37.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885784160.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.648 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds