Wall clock time and date at job start Mon Mar 30 2020 03:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46847 * 2 1 4 4 O 1.21281 * 120.00304 * 359.97438 * 3 2 1 5 5 N 1.34783 * 119.99743 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99855 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.46848 * 179.97438 * 6 5 3 8 8 H 1.09000 * 110.78437 * 56.79084 * 7 6 5 9 9 C 1.55405 * 110.85058 * 180.08666 * 7 6 5 10 10 C 1.54914 * 101.66697 * 153.70010 * 9 7 6 11 11 N 1.47426 * 104.82992 * 323.07703 * 10 9 7 12 12 C 1.36936 * 125.64483 * 204.16378 * 11 10 9 13 13 H 1.08004 * 119.99836 * 179.97438 * 12 11 10 14 14 C 1.38815 * 120.00358 * 359.95842 * 12 11 10 15 15 N 1.31619 * 119.99732 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00198 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46968 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47014 * 119.99939 * 16 14 12 19 19 H 1.48497 * 109.46957 * 239.99998 * 16 14 12 20 20 C 1.47018 * 108.70517 * 24.12623 * 11 10 9 21 21 H 1.09005 * 109.46926 * 60.00837 * 1 2 3 22 22 H 1.09000 * 109.47144 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47548 * 299.99900 * 1 2 3 24 24 H 1.09003 * 109.47116 * 239.99828 * 2 1 3 25 25 H 1.09002 * 109.46749 * 119.99906 * 2 1 3 26 26 H 0.96999 * 120.00280 * 359.97438 * 5 3 2 27 27 H 1.08999 * 109.47094 * 59.99757 * 6 5 3 28 28 H 1.08997 * 109.47268 * 300.00292 * 6 5 3 29 29 H 1.09000 * 110.89538 * 35.62814 * 9 7 6 30 30 H 1.09001 * 111.03900 * 271.83300 * 9 7 6 31 31 H 1.08999 * 110.37121 * 204.23438 * 10 9 7 32 32 H 1.09001 * 110.45739 * 81.96050 * 10 9 7 33 33 H 0.96996 * 119.99954 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.88241 * 118.36067 * 20 11 10 35 35 H 1.09000 * 109.88049 * 239.37196 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0000 7 6 5.3756 3.0483 0.0014 8 1 5.7632 2.4895 -0.8505 9 6 5.9288 4.5006 0.0030 10 6 7.3107 4.3087 0.6763 11 7 7.0879 3.2801 1.7087 12 6 7.8428 3.1060 2.8378 13 1 7.5964 2.3198 3.5362 14 6 8.9248 3.9398 3.0848 15 7 9.2248 4.8981 2.2338 16 14 9.9541 3.7029 4.6255 17 1 9.4125 2.5661 5.4126 18 1 11.3594 3.4140 4.2423 19 1 9.9089 4.9398 5.4460 20 6 5.9205 2.4727 1.3255 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9878 0.9299 0.0013 27 1 3.4819 3.5627 0.8894 28 1 3.4828 3.5617 -0.8905 29 1 5.2931 5.1580 0.5961 30 1 6.0386 4.8786 -1.0134 31 1 7.6422 5.2405 1.1345 32 1 8.0445 3.9628 -0.0517 33 1 9.9811 5.4805 2.4062 34 1 6.2187 1.4339 1.1833 35 1 5.1558 2.5360 2.0997 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267284166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:49 Heat of formation + Delta-G solvation = -27.713795 kcal Electronic energy + Delta-G solvation = -15652.509169 eV Core-core repulsion = 13071.623770 eV Total energy + Delta-G solvation = -2580.885399 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.66465 -37.64948 -34.63417 -32.92825 -32.37031 -29.80654 -28.28017 -25.81756 -24.46088 -22.92172 -20.59976 -19.88589 -19.50148 -17.17749 -16.70644 -15.99141 -15.65975 -14.98365 -14.64227 -13.91670 -13.67601 -13.52174 -12.63141 -12.51237 -12.43837 -11.85801 -11.76592 -11.67133 -11.48903 -11.27047 -10.95764 -10.82531 -10.43161 -10.12814 -10.00622 -9.89169 -9.70593 -9.49025 -8.91827 -8.66293 -6.84415 -5.66595 -3.08309 2.71969 3.31314 3.38907 3.44283 3.46875 4.47660 4.71901 4.96071 4.98020 5.14045 5.26998 5.39083 5.46065 5.51964 5.65197 5.70670 5.80703 5.89247 6.07714 6.09134 6.13118 6.33990 6.49170 6.54933 6.58738 6.72487 6.90523 7.50628 7.60172 7.62113 7.84755 8.31163 8.35526 9.21098 9.82097 10.46959 11.37461 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.047533 B = 0.005274 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.923694 B = 5308.154377 C = 5715.573575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.146 4.146 3 C 0.507 3.493 4 O -0.548 6.548 5 N -0.727 5.727 6 C 0.132 3.868 7 C -0.115 4.115 8 H 0.075 0.925 9 C -0.135 4.135 10 C 0.151 3.849 11 N -0.605 5.605 12 C -0.223 4.223 13 H 0.077 0.923 14 C -0.012 4.012 15 N -0.922 5.922 16 Si 0.914 3.086 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.290 1.290 20 C 0.142 3.858 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.401 0.599 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.012 0.988 33 H 0.251 0.749 34 H 0.017 0.983 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.174 -8.094 -5.944 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.293 3.707 4 O -0.426 6.426 5 N -0.378 5.378 6 C 0.008 3.992 7 C -0.134 4.134 8 H 0.094 0.906 9 C -0.174 4.174 10 C 0.027 3.973 11 N -0.331 5.331 12 C -0.351 4.351 13 H 0.095 0.905 14 C -0.207 4.207 15 N -0.571 5.571 16 Si 0.745 3.255 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.217 1.217 20 C 0.015 3.985 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.235 0.765 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.030 0.970 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -11.551 -7.335 -5.825 14.871 hybrid contribution 1.004 -0.553 0.732 1.360 sum -10.547 -7.888 -5.093 14.120 Atomic orbital electron populations 1.21514 0.93214 1.01329 1.03308 1.21638 0.98536 0.94105 1.04293 1.20770 0.82265 0.91747 0.75881 1.90687 1.55408 1.46674 1.49814 1.46141 1.07002 1.09640 1.75044 1.21423 0.93678 0.82101 1.01958 1.22482 0.92440 0.99390 0.99117 0.90619 1.23052 1.00404 0.93799 1.00182 1.21936 0.89817 0.96142 0.89451 1.44513 1.30798 1.34657 1.23117 1.19130 1.06369 1.12677 0.96962 0.90484 1.24792 0.98809 0.98239 0.98851 1.69806 1.29996 1.21203 1.36070 0.85996 0.79973 0.77319 0.82203 1.20546 1.21746 1.21701 1.21314 0.90401 0.93987 0.92762 0.92102 0.92270 0.92006 0.89073 0.88920 0.76460 0.91364 0.91793 0.91866 0.92128 0.87536 0.96987 0.93769 0.96469 0.95839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.20 37.16 0.34 -0.92 16 2 C -0.15 -1.33 6.42 -27.88 -0.18 -1.51 16 3 C 0.51 6.81 7.83 -10.98 -0.09 6.72 16 4 O -0.55 -9.58 15.98 5.56 0.09 -9.49 16 5 N -0.73 -9.36 5.40 -60.30 -0.33 -9.69 16 6 C 0.13 1.98 5.00 -4.04 -0.02 1.96 16 7 C -0.11 -1.92 3.03 -88.65 -0.27 -2.19 16 8 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 9 C -0.14 -2.52 6.55 -24.44 -0.16 -2.68 16 10 C 0.15 3.66 5.89 -2.53 -0.01 3.65 16 11 N -0.60 -15.49 3.39 -170.07 -0.58 -16.07 16 12 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 13 H 0.08 2.09 7.83 -52.48 -0.41 1.67 16 14 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 15 N -0.92 -26.90 10.09 55.49 0.56 -26.34 16 16 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 C 0.14 2.87 6.52 -3.07 -0.02 2.85 16 21 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 22 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.65 8.10 -51.93 -0.42 0.22 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.40 4.29 8.33 -40.82 -0.34 3.95 16 27 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.18 8.05 -51.93 -0.42 0.77 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.11 2.91 5.87 -51.93 -0.30 2.61 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.49 7.76 -51.93 -0.40 0.09 16 LS Contribution 287.48 15.07 4.33 4.33 Total: -1.00 -32.18 287.48 -7.26 -39.43 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.65 Total: -0.29 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -0.66 Total: 1.08 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.34 Total: -52.10 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.18 -7.26 -39.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267284166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.719 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds