Wall clock time and date at job start Mon Mar 30 2020 03:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46847 * 2 1 4 4 O 1.21281 * 120.00304 * 359.97438 * 3 2 1 5 5 N 1.34783 * 119.99743 * 179.97438 * 3 2 1 6 6 C 1.46500 * 119.99855 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.46848 * 179.97438 * 6 5 3 8 8 H 1.09000 * 110.78437 * 56.79084 * 7 6 5 9 9 C 1.55405 * 110.85058 * 180.08666 * 7 6 5 10 10 C 1.54914 * 101.66697 * 153.70010 * 9 7 6 11 11 N 1.47426 * 104.82992 * 323.07703 * 10 9 7 12 12 C 1.36936 * 125.64483 * 204.16378 * 11 10 9 13 13 H 1.08004 * 119.99836 * 179.97438 * 12 11 10 14 14 C 1.38815 * 120.00358 * 359.95842 * 12 11 10 15 15 N 1.31619 * 119.99732 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00198 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46968 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47014 * 119.99939 * 16 14 12 19 19 H 1.48497 * 109.46957 * 239.99998 * 16 14 12 20 20 C 1.47018 * 108.70517 * 24.12623 * 11 10 9 21 21 H 1.09005 * 109.46926 * 60.00837 * 1 2 3 22 22 H 1.09000 * 109.47144 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47548 * 299.99900 * 1 2 3 24 24 H 1.09003 * 109.47116 * 239.99828 * 2 1 3 25 25 H 1.09002 * 109.46749 * 119.99906 * 2 1 3 26 26 H 0.96999 * 120.00280 * 359.97438 * 5 3 2 27 27 H 1.08999 * 109.47094 * 59.99757 * 6 5 3 28 28 H 1.08997 * 109.47268 * 300.00292 * 6 5 3 29 29 H 1.09000 * 110.89538 * 35.62814 * 9 7 6 30 30 H 1.09001 * 111.03900 * 271.83300 * 9 7 6 31 31 H 1.08999 * 110.37121 * 204.23438 * 10 9 7 32 32 H 1.09001 * 110.45739 * 81.96050 * 10 9 7 33 33 H 0.96996 * 119.99954 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.88241 * 118.36067 * 20 11 10 35 35 H 1.09000 * 109.88049 * 239.37196 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8457 3.0483 0.0000 7 6 5.3756 3.0483 0.0014 8 1 5.7632 2.4895 -0.8505 9 6 5.9288 4.5006 0.0030 10 6 7.3107 4.3087 0.6763 11 7 7.0879 3.2801 1.7087 12 6 7.8428 3.1060 2.8378 13 1 7.5964 2.3198 3.5362 14 6 8.9248 3.9398 3.0848 15 7 9.2248 4.8981 2.2338 16 14 9.9541 3.7029 4.6255 17 1 9.4125 2.5661 5.4126 18 1 11.3594 3.4140 4.2423 19 1 9.9089 4.9398 5.4460 20 6 5.9205 2.4727 1.3255 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9878 0.9299 0.0013 27 1 3.4819 3.5627 0.8894 28 1 3.4828 3.5617 -0.8905 29 1 5.2931 5.1580 0.5961 30 1 6.0386 4.8786 -1.0134 31 1 7.6422 5.2405 1.1345 32 1 8.0445 3.9628 -0.0517 33 1 9.9811 5.4805 2.4062 34 1 6.2187 1.4339 1.1833 35 1 5.1558 2.5360 2.0997 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267284166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:49 Heat of formation + Delta-G solvation = -49.835936 kcal Electronic energy + Delta-G solvation = -15653.468457 eV Core-core repulsion = 13071.623770 eV Total energy + Delta-G solvation = -2581.844687 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.78577 -39.24881 -36.05110 -34.32336 -33.59586 -31.58609 -29.88053 -27.44574 -25.89314 -24.16527 -22.16845 -21.33617 -20.83815 -18.91033 -17.99890 -17.28541 -16.72024 -16.67746 -16.20575 -15.56787 -14.85084 -14.77582 -14.28011 -13.95187 -13.55505 -13.40070 -13.13089 -13.07574 -12.80360 -12.69343 -12.60310 -11.98992 -11.97918 -11.89731 -11.82666 -11.58666 -11.37646 -10.82298 -10.74335 -10.05523 -8.88398 -7.78013 -5.22239 1.46669 1.47566 1.57838 1.69983 2.29329 2.49427 3.31942 3.63354 3.77599 3.90304 3.98791 4.06716 4.28028 4.31227 4.45741 4.64609 4.68179 4.74977 4.85623 4.91544 5.02663 5.06284 5.09993 5.12764 5.33960 5.38054 5.46695 5.51412 5.65516 5.82435 6.31535 6.61198 7.10936 7.30781 7.78850 8.42324 9.24181 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.047533 B = 0.005274 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.923694 B = 5308.154377 C = 5715.573575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.501 3.499 4 O -0.594 6.594 5 N -0.720 5.720 6 C 0.143 3.857 7 C -0.093 4.093 8 H 0.097 0.903 9 C -0.124 4.124 10 C 0.152 3.848 11 N -0.629 5.629 12 C -0.240 4.240 13 H 0.081 0.919 14 C -0.068 4.068 15 N -0.949 5.949 16 Si 0.980 3.020 17 H -0.267 1.267 18 H -0.291 1.291 19 H -0.292 1.292 20 C 0.138 3.862 21 H 0.047 0.953 22 H 0.086 0.914 23 H 0.042 0.958 24 H 0.121 0.879 25 H 0.114 0.886 26 H 0.415 0.585 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.070 0.930 32 H -0.009 1.009 33 H 0.247 0.753 34 H 0.031 0.969 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.898 -9.986 -6.363 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.177 4.177 3 C 0.290 3.710 4 O -0.475 6.475 5 N -0.372 5.372 6 C 0.018 3.982 7 C -0.113 4.113 8 H 0.116 0.884 9 C -0.163 4.163 10 C 0.027 3.973 11 N -0.355 5.355 12 C -0.369 4.369 13 H 0.098 0.902 14 C -0.260 4.260 15 N -0.599 5.599 16 Si 0.808 3.192 17 H -0.191 1.191 18 H -0.218 1.218 19 H -0.219 1.219 20 C 0.013 3.987 21 H 0.066 0.934 22 H 0.105 0.895 23 H 0.061 0.939 24 H 0.139 0.861 25 H 0.132 0.868 26 H 0.251 0.749 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.009 0.991 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -12.284 -9.274 -6.252 16.613 hybrid contribution 1.209 0.016 0.859 1.484 sum -11.075 -9.257 -5.393 15.409 Atomic orbital electron populations 1.21534 0.93515 1.02613 1.01781 1.21707 0.98162 0.91209 1.06662 1.21595 0.81765 0.93166 0.74463 1.90672 1.56470 1.48493 1.51914 1.46059 1.07409 1.09096 1.74624 1.21138 0.92159 0.83462 1.01397 1.22323 0.93370 0.97703 0.97856 0.88438 1.22897 0.96917 0.95388 1.01057 1.21731 0.92501 0.94209 0.88907 1.44839 1.31905 1.35916 1.22876 1.19507 1.06794 1.12609 0.97965 0.90165 1.25636 1.00235 0.98267 1.01870 1.70063 1.30235 1.21948 1.37672 0.84983 0.78065 0.77351 0.78772 1.19091 1.21805 1.21919 1.21491 0.88643 0.94180 0.94407 0.93403 0.89504 0.93854 0.86133 0.86804 0.74888 0.93415 0.91017 0.92163 0.89245 0.91203 0.99053 0.94354 0.95109 0.96285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.20 71.98 0.66 -1.58 16 2 C -0.14 -2.07 6.42 29.85 0.19 -1.88 16 3 C 0.50 12.44 7.83 87.66 0.69 13.12 16 4 O -0.59 -20.34 15.98 -3.03 -0.05 -20.39 16 5 N -0.72 -16.68 5.40 -463.07 -2.50 -19.18 16 6 C 0.14 4.01 5.00 86.38 0.43 4.44 16 7 C -0.09 -2.91 3.03 -9.52 -0.03 -2.94 16 8 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 9 C -0.12 -4.47 6.55 32.08 0.21 -4.26 16 10 C 0.15 7.43 5.89 86.86 0.51 7.95 16 11 N -0.63 -32.31 3.39 -691.97 -2.35 -34.66 16 12 C -0.24 -13.49 10.27 84.03 0.86 -12.62 16 13 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 14 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 15 N -0.95 -56.80 10.09 21.65 0.22 -56.58 16 16 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 20 C 0.14 5.41 6.52 86.73 0.57 5.98 16 21 H 0.05 0.90 8.10 -2.38 -0.02 0.88 16 22 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 24 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.41 7.43 8.33 -92.71 -0.77 6.66 16 27 H 0.05 1.56 8.06 -2.39 -0.02 1.54 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 2.21 8.05 -2.39 -0.02 2.19 16 30 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 3.95 5.87 -2.39 -0.01 3.94 16 32 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.02 0.77 7.76 -2.39 -0.02 0.75 16 Total: -1.00 -71.23 287.48 2.20 -69.03 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.29 Total: 9.23 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 4.56 Total: 4.83 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.63 Total: -110.42 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.05 Total: -20.39 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -71.23 2.20 -69.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267284166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.197 kcal (2) G-P(sol) polarization free energy of solvation -71.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds