Wall clock time and date at job start Mon Mar 30 2020 03:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47592 * 2 1 4 4 O 1.21282 * 119.99684 * 359.97438 * 3 2 1 5 5 N 1.34769 * 120.00461 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00237 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46998 * 180.02562 * 6 5 3 8 8 H 1.08999 * 110.64119 * 308.13794 * 7 6 5 9 9 C 1.55161 * 110.71785 * 184.99995 * 7 6 5 10 10 C 1.54908 * 101.58161 * 206.13606 * 9 7 6 11 11 N 1.47428 * 104.83119 * 37.00844 * 10 9 7 12 12 C 1.36938 * 125.64397 * 155.82831 * 11 10 9 13 13 H 1.08004 * 119.99926 * 180.02562 * 12 11 10 14 14 C 1.38808 * 120.00347 * 0.02562 * 12 11 10 15 15 N 1.31616 * 120.00207 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00078 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47377 * 59.99900 * 16 14 12 18 18 H 1.48498 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47210 * 299.99799 * 16 14 12 20 20 C 1.47021 * 108.70297 * 335.87190 * 11 10 9 21 21 H 1.09004 * 109.47108 * 300.00035 * 1 2 3 22 22 H 1.09000 * 109.46870 * 59.99930 * 1 2 3 23 23 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47261 * 239.99681 * 2 1 3 25 25 H 1.09004 * 109.47368 * 120.00065 * 2 1 3 26 26 H 0.97010 * 119.99854 * 0.02562 * 5 3 2 27 27 H 1.08993 * 109.47452 * 60.00368 * 6 5 3 28 28 H 1.09000 * 109.47175 * 300.00158 * 6 5 3 29 29 H 1.09004 * 111.00173 * 324.21029 * 9 7 6 30 30 H 1.08997 * 111.00334 * 88.01811 * 9 7 6 31 31 H 1.08991 * 110.36983 * 155.84967 * 10 9 7 32 32 H 1.08995 * 110.36455 * 278.06362 * 10 9 7 33 33 H 0.97001 * 120.00763 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.88300 * 241.64085 * 20 11 10 35 35 H 1.09001 * 109.87774 * 120.48140 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8458 3.0482 0.0011 7 6 5.3759 3.0482 0.0010 8 1 5.7601 2.4179 0.8029 9 6 5.9249 4.4938 0.1280 10 6 7.3091 4.3619 -0.5547 11 7 7.0902 3.4282 -1.6744 12 6 7.8490 3.3544 -2.8120 13 1 7.6054 2.6328 -3.5777 14 6 8.9312 4.2071 -2.9809 15 7 9.2285 5.0862 -2.0476 16 14 9.9658 4.1068 -4.5330 17 1 9.1100 4.3746 -5.7166 18 1 11.0531 5.1162 -4.4692 19 1 10.5574 2.7495 -4.6468 20 6 5.9217 2.5902 -1.3679 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.9878 0.9297 0.0005 27 1 3.4823 3.5618 0.8911 28 1 3.4828 3.5624 -0.8889 29 1 5.2910 5.2009 -0.4072 30 1 6.0303 4.7811 1.1742 31 1 7.6419 5.3304 -0.9279 32 1 8.0394 3.9542 0.1441 33 1 9.9845 5.6823 -2.1658 34 1 6.2197 1.5430 -1.3166 35 1 5.1587 2.7235 -2.1348 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267284167.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:53 Heat of formation + Delta-G solvation = -49.611518 kcal Electronic energy + Delta-G solvation = -15638.613440 eV Core-core repulsion = 13056.778484 eV Total energy + Delta-G solvation = -2581.834956 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78328 -39.25929 -36.05101 -34.33087 -33.59578 -31.58543 -29.88898 -27.43694 -25.89033 -24.14536 -22.15944 -21.39893 -20.81060 -18.90563 -17.98761 -17.30882 -16.71327 -16.67649 -16.17745 -15.57527 -14.85452 -14.76384 -14.27772 -13.94119 -13.54113 -13.41925 -13.14208 -13.07421 -12.81448 -12.64746 -12.60248 -12.05390 -11.98884 -11.87490 -11.82861 -11.58768 -11.38141 -10.81827 -10.72728 -10.05610 -8.88305 -7.77476 -5.21909 1.46594 1.49731 1.56186 1.70126 2.29613 2.49891 3.32052 3.63579 3.77004 3.90033 3.98972 4.07432 4.28107 4.31325 4.45840 4.64857 4.68222 4.75509 4.85777 4.91249 5.02676 5.06590 5.10049 5.12763 5.33452 5.37982 5.46195 5.51917 5.65683 5.82604 6.31738 6.61489 7.11053 7.31110 7.79132 8.42638 9.24274 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.049573 B = 0.005194 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.690361 B = 5389.382150 C = 5767.152675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.501 3.499 4 O -0.595 6.595 5 N -0.720 5.720 6 C 0.142 3.858 7 C -0.093 4.093 8 H 0.098 0.902 9 C -0.124 4.124 10 C 0.152 3.848 11 N -0.629 5.629 12 C -0.243 4.243 13 H 0.080 0.920 14 C -0.067 4.067 15 N -0.949 5.949 16 Si 0.980 3.020 17 H -0.278 1.278 18 H -0.293 1.293 19 H -0.277 1.277 20 C 0.138 3.862 21 H 0.047 0.953 22 H 0.042 0.958 23 H 0.086 0.914 24 H 0.114 0.886 25 H 0.121 0.879 26 H 0.415 0.585 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.070 0.930 32 H -0.008 1.008 33 H 0.247 0.753 34 H 0.031 0.969 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.821 -10.459 6.040 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.290 3.710 4 O -0.476 6.476 5 N -0.372 5.372 6 C 0.018 3.982 7 C -0.112 4.112 8 H 0.116 0.884 9 C -0.163 4.163 10 C 0.027 3.973 11 N -0.355 5.355 12 C -0.372 4.372 13 H 0.098 0.902 14 C -0.259 4.259 15 N -0.599 5.599 16 Si 0.808 3.192 17 H -0.204 1.204 18 H -0.219 1.219 19 H -0.203 1.203 20 C 0.013 3.987 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.105 0.895 24 H 0.132 0.868 25 H 0.139 0.861 26 H 0.252 0.748 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.009 0.991 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -12.195 -9.724 5.941 16.691 hybrid contribution 1.182 0.061 -0.869 1.468 sum -11.013 -9.663 5.072 15.505 Atomic orbital electron populations 1.21535 0.93544 1.02610 1.01772 1.21705 0.98138 0.91186 1.06678 1.21601 0.81776 0.93173 0.74465 1.90674 1.56491 1.48510 1.51916 1.46061 1.07412 1.09067 1.74620 1.21154 0.92197 0.83475 1.01373 1.22280 0.93356 0.98113 0.97421 0.88368 1.22857 0.96952 0.95444 1.01046 1.21722 0.92506 0.95668 0.87416 1.44829 1.31752 1.40367 1.18599 1.19433 1.06825 1.15452 0.95474 0.90233 1.25635 1.00200 0.98564 1.01517 1.70047 1.30300 1.24671 1.34857 0.85125 0.77913 0.77195 0.78929 1.20433 1.21900 1.20273 1.21507 0.88620 0.93929 0.94648 0.93422 0.93867 0.89494 0.86764 0.86128 0.74844 0.91085 0.93424 0.92155 0.89231 0.91209 0.99051 0.94323 0.95152 0.96344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.20 71.98 0.66 -1.57 16 2 C -0.14 -2.04 6.42 29.85 0.19 -1.85 16 3 C 0.50 12.37 7.83 87.66 0.69 13.06 16 4 O -0.59 -20.36 15.98 -3.04 -0.05 -20.41 16 5 N -0.72 -16.53 5.47 -463.06 -2.53 -19.06 16 6 C 0.14 4.00 5.02 86.38 0.43 4.44 16 7 C -0.09 -2.89 2.96 -9.60 -0.03 -2.92 16 8 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 9 C -0.12 -4.48 6.53 31.99 0.21 -4.28 16 10 C 0.15 7.46 5.89 86.85 0.51 7.97 16 11 N -0.63 -32.43 3.39 -692.01 -2.35 -34.78 16 12 C -0.24 -13.71 10.27 84.03 0.86 -12.85 16 13 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 14 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 15 N -0.95 -56.82 10.09 21.65 0.22 -56.60 16 16 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 C 0.14 5.46 6.75 86.73 0.59 6.04 16 21 H 0.05 0.89 8.10 -2.38 -0.02 0.87 16 22 H 0.04 0.85 8.10 -2.39 -0.02 0.83 16 23 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.41 7.26 8.47 -92.70 -0.79 6.47 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.56 7.93 -2.39 -0.02 1.54 16 29 H 0.06 2.22 8.05 -2.38 -0.02 2.20 16 30 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 3.95 5.87 -2.39 -0.01 3.94 16 32 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.02 0.76 7.68 -2.39 -0.02 0.74 16 Total: -1.00 -71.38 287.65 2.17 -69.21 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.28 Total: 9.19 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 4.58 Total: 4.72 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -4.66 Total: -110.44 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.38 2.17 -69.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267284167.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.597 kcal (2) G-P(sol) polarization free energy of solvation -71.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds