Wall clock time and date at job start Mon Mar 30 2020 03:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.46959 * 2 1 4 4 O 1.21286 * 120.00282 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99763 * 179.97438 * 3 2 1 6 6 C 1.46506 * 119.99952 * 179.97438 * 5 3 2 7 7 C 1.53773 * 113.61686 * 254.13880 * 6 5 3 8 8 C 1.54049 * 86.98868 * 270.83833 * 7 6 5 9 9 C 1.53002 * 113.62545 * 220.02302 * 8 7 6 10 10 N 1.46502 * 109.46813 * 272.49316 * 9 8 7 11 11 C 1.36936 * 119.99868 * 179.97438 * 10 9 8 12 12 H 1.08009 * 119.99818 * 0.02562 * 11 10 9 13 13 C 1.38810 * 120.00011 * 179.97438 * 11 10 9 14 14 N 1.31618 * 120.00029 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 119.99978 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47394 * 90.00194 * 15 13 11 17 17 H 1.48506 * 109.47201 * 209.99835 * 15 13 11 18 18 H 1.48504 * 109.47499 * 329.99807 * 15 13 11 19 19 C 1.53781 * 113.61361 * 156.53041 * 6 5 3 20 20 H 1.08998 * 109.47323 * 299.99905 * 1 2 3 21 21 H 1.08999 * 109.47371 * 60.00084 * 1 2 3 22 22 H 1.09002 * 109.47178 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47078 * 239.99641 * 2 1 3 24 24 H 1.09002 * 109.46665 * 120.00119 * 2 1 3 25 25 H 0.96997 * 120.00341 * 359.97438 * 5 3 2 26 26 H 1.09002 * 112.84852 * 25.33640 * 6 5 3 27 27 H 1.09007 * 113.61678 * 25.42910 * 7 6 5 28 28 H 1.09000 * 113.61916 * 156.33583 * 7 6 5 29 29 H 1.09005 * 113.68989 * 89.12112 * 8 7 6 30 30 H 1.09005 * 109.46483 * 32.48989 * 9 8 7 31 31 H 1.08995 * 109.47301 * 152.49438 * 9 8 7 32 32 H 0.97002 * 119.99977 * 0.02562 * 10 9 8 33 33 H 0.96998 * 120.00317 * 180.02562 * 14 13 11 34 34 H 1.09001 * 113.61158 * 203.66864 * 19 6 5 35 35 H 1.08998 * 113.61196 * 334.56885 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6670 0.0005 6 6 3.8457 3.0483 0.0000 7 6 4.4148 3.5000 -1.3553 8 6 5.7751 2.9630 -0.8713 9 6 6.9582 3.8528 -1.2577 10 7 7.4408 3.4730 -2.5877 11 6 8.5006 4.1361 -3.1466 12 1 8.9810 4.9388 -2.6066 13 6 8.9583 3.7759 -4.4066 14 7 9.9773 4.4129 -4.9436 15 14 8.1280 2.3873 -5.3402 16 1 7.0267 2.9379 -6.1703 17 1 9.1215 1.7171 -6.2173 18 1 7.5759 1.4027 -4.3752 19 6 5.2693 3.1986 0.5618 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 3.9877 0.9298 0.0013 26 1 3.1306 3.7502 0.4290 27 1 4.0053 2.9534 -2.2049 28 1 4.3977 4.5805 -1.4979 29 1 5.9406 1.9120 -1.1085 30 1 6.6397 4.8952 -1.2706 31 1 7.7603 3.7268 -0.5305 32 1 7.0092 2.7524 -3.0728 33 1 10.2969 4.1615 -5.8242 34 1 5.4853 4.1968 0.9424 35 1 5.5491 2.4089 1.2590 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281981168.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:27 Heat of formation + Delta-G solvation = -15.838866 kcal Electronic energy + Delta-G solvation = -15391.732257 eV Core-core repulsion = 12811.361794 eV Total energy + Delta-G solvation = -2580.370464 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28215 -38.46561 -34.71258 -33.34479 -32.68402 -31.11968 -27.35143 -25.60573 -24.83769 -22.92327 -21.35308 -20.60161 -19.22612 -17.61923 -17.22701 -16.01154 -15.75804 -14.88028 -14.44327 -14.40689 -13.89321 -13.75473 -13.23544 -12.79122 -12.59698 -12.35664 -12.25605 -11.98722 -11.78375 -11.45264 -11.37731 -10.89847 -10.65038 -10.26659 -10.18899 -9.96662 -9.85892 -9.57615 -9.07089 -8.86905 -7.21124 -5.76247 -3.11179 2.51409 3.04307 3.36544 3.39786 3.44752 4.51130 4.59342 4.61380 4.67172 4.82694 4.84358 5.01484 5.01842 5.28013 5.52904 5.54159 5.65177 5.68187 5.70177 5.83647 5.85410 5.95760 5.97244 6.11040 6.14338 6.26811 6.56401 6.68948 6.82845 7.39378 8.00737 8.12178 8.43244 9.22736 9.95271 10.15555 11.42443 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.038425 B = 0.005295 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.519104 B = 5286.461429 C = 5782.370031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 C 0.511 3.489 4 O -0.543 6.543 5 N -0.712 5.712 6 C 0.114 3.886 7 C -0.141 4.141 8 C -0.119 4.119 9 C 0.167 3.833 10 N -0.756 5.756 11 C -0.244 4.244 12 H 0.090 0.910 13 C 0.003 3.997 14 N -0.935 5.935 15 Si 0.886 3.114 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.278 1.278 19 C -0.136 4.136 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.401 0.599 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.029 0.971 31 H 0.026 0.974 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.096 0.904 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.490 -9.578 12.045 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.298 3.702 4 O -0.420 6.420 5 N -0.363 5.363 6 C 0.009 3.991 7 C -0.180 4.180 8 C -0.138 4.138 9 C 0.039 3.961 10 N -0.401 5.401 11 C -0.374 4.374 12 H 0.108 0.892 13 C -0.192 4.192 14 N -0.584 5.584 15 Si 0.716 3.284 16 H -0.211 1.211 17 H -0.217 1.217 18 H -0.205 1.205 19 C -0.174 4.174 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.111 0.889 24 H 0.110 0.890 25 H 0.235 0.765 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.873 -8.741 12.022 21.746 hybrid contribution -0.001 -1.361 -0.883 1.622 sum -15.874 -10.102 11.139 21.866 Atomic orbital electron populations 1.21522 0.93038 1.01497 1.03380 1.21644 0.98698 0.93839 1.04367 1.20801 0.82108 0.91840 0.75430 1.90698 1.55290 1.46612 1.49351 1.45765 1.07052 1.08387 1.75129 1.21930 0.95649 0.83410 0.98093 1.23492 0.95907 1.01965 0.96634 1.22864 0.95364 1.00386 0.95146 1.20621 0.92530 0.95498 0.87408 1.42704 1.38685 1.41956 1.16772 1.19092 1.05714 1.13141 0.99429 0.89247 1.24672 0.98053 0.99234 0.97290 1.69702 1.27696 1.43548 1.17415 0.86527 0.78943 0.82908 0.80002 1.21096 1.21740 1.20472 1.23284 0.94135 1.03044 0.96967 0.92029 0.91949 0.92140 0.88867 0.88964 0.76469 0.88337 0.91545 0.88883 0.89594 0.95328 0.95566 0.80746 0.93077 0.88524 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.16 0.34 -0.77 16 2 C -0.15 -1.12 6.42 -27.89 -0.18 -1.30 16 3 C 0.51 5.95 7.83 -10.99 -0.09 5.86 16 4 O -0.54 -8.54 15.60 5.55 0.09 -8.45 16 5 N -0.71 -7.49 5.26 -53.02 -0.28 -7.77 16 6 C 0.11 1.38 4.30 -67.12 -0.29 1.09 16 7 C -0.14 -1.99 7.45 -25.78 -0.19 -2.18 16 8 C -0.12 -1.71 3.65 -89.67 -0.33 -2.04 16 9 C 0.17 3.17 6.10 -4.04 -0.02 3.14 16 10 N -0.76 -18.12 5.41 -59.90 -0.32 -18.44 16 11 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 12 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 13 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 14 N -0.94 -29.71 13.97 55.49 0.78 -28.93 16 15 Si 0.89 22.33 27.73 -169.99 -4.71 17.61 16 16 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 18 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 19 C -0.14 -1.54 7.38 -25.92 -0.19 -1.73 16 20 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 21 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 22 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.40 3.27 8.70 -40.82 -0.36 2.91 16 26 H 0.10 1.29 7.50 -51.93 -0.39 0.90 16 27 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.03 0.56 7.85 -51.93 -0.41 0.15 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.36 8.42 5.53 -40.82 -0.23 8.19 16 33 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 34 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 292.15 15.07 4.40 4.40 Total: -1.00 -34.02 292.15 -6.85 -40.88 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.60 Total: 5.81 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -1.20 Total: -5.10 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.17 Total: -55.15 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.02 -6.85 -40.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281981168.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.037 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds