Wall clock time and date at job start Mon Mar 30 2020 03:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 115.56221 * 2 1 4 4 C 1.53000 * 117.50281 * 214.31073 * 2 1 3 5 5 C 1.52998 * 117.50038 * 145.68309 * 2 1 3 6 6 H 1.08995 * 117.50045 * 215.00436 * 5 2 1 7 7 C 1.50702 * 117.49616 * 0.02562 * 5 2 1 8 8 O 1.21276 * 120.00433 * 359.97438 * 7 5 2 9 9 N 1.34780 * 119.99636 * 179.97438 * 7 5 2 10 10 C 1.46495 * 120.00410 * 0.02562 * 9 7 5 11 11 C 1.46502 * 119.99575 * 179.97438 * 9 7 5 12 12 C 1.52996 * 109.47591 * 270.00486 * 11 9 7 13 13 N 1.46498 * 109.47059 * 179.97438 * 12 11 9 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 11 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47294 * 90.00155 * 18 16 14 20 20 H 1.48499 * 109.47218 * 210.00015 * 18 16 14 21 21 H 1.48496 * 109.47166 * 329.99846 * 18 16 14 22 22 H 1.09000 * 109.46959 * 274.31073 * 1 2 3 23 23 H 1.08997 * 109.46699 * 34.31315 * 1 2 3 24 24 H 1.08996 * 109.46653 * 154.31174 * 1 2 3 25 25 H 1.08992 * 117.49782 * 145.02074 * 4 2 1 26 26 H 1.09001 * 117.49647 * 359.97438 * 4 2 1 27 27 H 1.08998 * 109.47154 * 269.99908 * 10 9 7 28 28 H 1.09006 * 109.47427 * 29.99088 * 10 9 7 29 29 H 1.08998 * 109.47658 * 149.99410 * 10 9 7 30 30 H 1.09004 * 109.46697 * 150.00528 * 11 9 7 31 31 H 1.09000 * 109.46990 * 30.01358 * 11 9 7 32 32 H 1.09004 * 109.47066 * 60.00267 * 12 11 9 33 33 H 1.08994 * 109.46974 * 300.00415 * 12 11 9 34 34 H 0.97001 * 120.00384 * 0.02562 * 13 12 11 35 35 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2366 -1.1209 -0.7650 5 6 2.2365 -1.1209 0.7651 6 1 3.1713 -0.8749 1.2687 7 6 1.3720 -2.1408 1.4605 8 8 0.1639 -2.0535 1.4010 9 7 1.9416 -3.1500 2.1487 10 6 3.4010 -3.2552 2.2212 11 6 1.1013 -4.1411 2.8253 12 6 0.8091 -3.6733 4.2523 13 7 -0.0318 -4.6642 4.9285 14 6 -0.4197 -4.4617 6.2262 15 1 -0.1093 -3.5695 6.7496 16 6 -1.2116 -5.4034 6.8688 17 7 -1.5893 -6.4910 6.2310 18 14 -1.7413 -5.1269 8.6386 19 1 -3.0315 -4.3920 8.6602 20 1 -1.9070 -6.4379 9.3163 21 1 -0.7065 -4.3312 9.3465 22 1 -0.3633 0.0772 1.0248 23 1 -0.3632 0.8488 -0.5793 24 1 -0.3632 -0.9261 -0.4455 25 1 3.1716 -0.8751 -1.2682 26 1 1.6114 -1.8587 -1.2679 27 1 3.7634 -3.8601 1.3901 28 1 3.8404 -2.2593 2.1643 29 1 3.6852 -3.7244 3.1631 30 1 1.6218 -5.0983 2.8561 31 1 0.1638 -4.2547 2.2809 32 1 0.2886 -2.7160 4.2215 33 1 1.7466 -3.5597 4.7965 34 1 -0.3102 -5.4657 4.4586 35 1 -2.1431 -7.1489 6.6799 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481204999.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:29 Heat of formation + Delta-G solvation = 4.447595 kcal Electronic energy + Delta-G solvation = -15617.025311 eV Core-core repulsion = 13037.534534 eV Total energy + Delta-G solvation = -2579.490777 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.14548 -37.08070 -35.55462 -34.29506 -31.39316 -28.87543 -28.12794 -26.40538 -24.61057 -22.89030 -21.41291 -20.83014 -18.64837 -17.39050 -17.00836 -15.75631 -15.45879 -14.88971 -14.39858 -13.80242 -13.49292 -13.22434 -13.08658 -12.85391 -12.74838 -12.56831 -12.48882 -11.91258 -11.54775 -11.23918 -10.97268 -10.86431 -10.65548 -10.31914 -10.10368 -10.06782 -9.72906 -9.33520 -8.84209 -8.42803 -6.90046 -5.73318 -3.02416 2.63380 3.11993 3.46739 3.51460 3.53181 3.73268 4.46461 4.58673 4.65012 4.74452 4.92397 5.20114 5.28136 5.38656 5.48034 5.56745 5.64056 5.70265 5.76228 5.82402 5.89666 5.97641 6.07559 6.12210 6.17123 6.53504 6.62861 6.78683 6.96301 7.57800 7.73114 8.39202 8.45654 9.56138 10.12630 10.47867 11.49721 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.045137 B = 0.005154 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.183409 B = 5431.433093 C = 5697.432412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 H 0.109 0.891 4 C -0.152 4.152 5 C -0.192 4.192 6 H 0.122 0.878 7 C 0.538 3.462 8 O -0.528 6.528 9 N -0.610 5.610 10 C 0.080 3.920 11 C 0.108 3.892 12 C 0.143 3.857 13 N -0.731 5.731 14 C -0.238 4.238 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.282 1.282 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.023 0.977 33 H 0.017 0.983 34 H 0.384 0.616 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.641 9.997 -13.473 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.139 4.139 3 H 0.127 0.873 4 C -0.190 4.190 5 C -0.213 4.213 6 H 0.140 0.860 7 C 0.326 3.674 8 O -0.404 6.404 9 N -0.343 5.343 10 C -0.064 4.064 11 C -0.014 4.014 12 C 0.015 3.985 13 N -0.375 5.375 14 C -0.369 4.369 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.208 1.208 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.040 0.960 33 H 0.035 0.965 34 H 0.217 0.783 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.978 10.091 -13.329 20.000 hybrid contribution -0.118 -0.242 1.004 1.039 sum 10.859 9.850 -12.325 19.153 Atomic orbital electron populations 1.21369 0.91404 1.01308 1.02862 1.22367 0.96728 0.93392 1.01383 0.87329 1.23053 1.02902 1.02053 0.90949 1.22346 1.02098 1.01260 0.95611 0.85999 1.19646 0.88027 0.81200 0.78536 1.90728 1.14448 1.73966 1.61282 1.47777 1.07051 1.27782 1.51700 1.21801 0.79937 1.02210 1.02423 1.21696 0.95471 0.90151 0.94123 1.20903 0.94083 0.93602 0.89946 1.42215 1.59973 1.22841 1.12500 1.19217 1.25369 1.03751 0.88563 0.91220 1.24745 1.00782 0.96935 0.98527 1.69666 1.41144 1.10818 1.36647 0.86158 0.78546 0.76781 0.84526 1.21662 1.21732 1.20773 0.91150 0.93468 0.91713 0.88071 0.88322 0.92737 0.91252 0.90735 0.90564 0.89751 0.95955 0.96517 0.78275 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 8.43 37.16 0.31 -1.10 16 2 C -0.12 -1.26 6.41 -90.62 -0.58 -1.84 16 3 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.15 -1.42 9.88 -26.73 -0.26 -1.68 16 5 C -0.19 -2.15 5.29 -91.77 -0.49 -2.64 16 6 H 0.12 1.09 6.44 -51.93 -0.33 0.75 16 7 C 0.54 8.36 7.44 -10.98 -0.08 8.28 16 8 O -0.53 -10.19 12.68 5.56 0.07 -10.12 16 9 N -0.61 -9.04 2.87 -181.57 -0.52 -9.56 16 10 C 0.08 0.82 10.27 59.84 0.61 1.44 16 11 C 0.11 1.94 5.52 -4.04 -0.02 1.91 16 12 C 0.14 3.14 6.58 -4.04 -0.03 3.11 16 13 N -0.73 -19.58 5.60 -59.91 -0.34 -19.92 16 14 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 15 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 18 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H 0.07 1.04 7.26 -51.93 -0.38 0.67 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.91 7.01 -51.93 -0.36 0.55 16 25 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.10 1.01 8.05 -51.93 -0.42 0.60 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.57 6.00 -51.93 -0.31 0.26 16 29 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 30 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 31 H 0.08 1.67 7.42 -51.93 -0.39 1.29 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.38 10.64 7.67 -40.82 -0.31 10.33 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 291.37 15.07 4.39 4.39 Total: -1.00 -33.69 291.37 -6.90 -40.59 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.42 Total: 5.05 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.78 Total: -0.15 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.13 Total: -57.75 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.69 -6.90 -40.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481204999.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.037 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds