Wall clock time and date at job start Mon Mar 30 2020 03:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09009 * 115.55561 * 2 1 4 4 C 1.53077 * 117.49476 * 214.27098 * 2 1 3 5 5 C 1.53002 * 59.98498 * 252.51234 * 4 2 1 6 6 H 1.09001 * 117.49461 * 107.50104 * 5 4 2 7 7 C 1.50700 * 117.49942 * 252.49668 * 5 4 2 8 8 O 1.21283 * 119.99803 * 68.74644 * 7 5 4 9 9 N 1.34777 * 119.99675 * 249.02519 * 7 5 4 10 10 C 1.46496 * 120.00345 * 359.72090 * 9 7 5 11 11 C 1.46497 * 119.99525 * 179.72583 * 9 7 5 12 12 C 1.53009 * 109.47238 * 90.00006 * 11 9 7 13 13 N 1.46497 * 109.47238 * 179.97438 * 12 11 9 14 14 C 1.36934 * 120.00370 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99711 * 359.97438 * 14 13 12 16 16 C 1.38810 * 120.00367 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99961 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99931 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46765 * 90.00533 * 18 16 14 20 20 H 1.48499 * 109.47454 * 209.99884 * 18 16 14 21 21 H 1.48497 * 109.47365 * 330.00613 * 18 16 14 22 22 H 1.08996 * 109.47264 * 274.32998 * 1 2 3 23 23 H 1.09007 * 109.47424 * 34.32740 * 1 2 3 24 24 H 1.08999 * 109.47440 * 154.32848 * 1 2 3 25 25 H 1.09008 * 117.51268 * 145.03501 * 4 2 1 26 26 H 1.08992 * 117.49669 * 0.02562 * 4 2 1 27 27 H 1.08997 * 109.47115 * 90.00316 * 10 9 7 28 28 H 1.08995 * 109.47364 * 210.00706 * 10 9 7 29 29 H 1.09002 * 109.47090 * 330.00257 * 10 9 7 30 30 H 1.09000 * 109.46889 * 209.99487 * 11 9 7 31 31 H 1.09001 * 109.47460 * 330.00097 * 11 9 7 32 32 H 1.09000 * 109.46757 * 299.99562 * 12 11 9 33 33 H 1.08993 * 109.47081 * 59.99692 * 12 11 9 34 34 H 0.97001 * 120.00037 * 359.97438 * 13 12 11 35 35 H 0.97004 * 119.99711 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1221 -0.7646 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8579 1.2692 7 6 3.5292 -0.7806 1.4611 8 8 3.9709 0.3474 1.4024 9 7 4.1974 -1.7314 2.1438 10 6 3.6639 -3.0939 2.2147 11 6 5.4573 -1.4022 2.8150 12 6 5.1679 -0.9404 4.2448 13 7 6.4278 -0.6118 4.9162 14 6 6.4183 -0.1731 6.2134 15 1 5.4819 -0.0690 6.7413 16 6 7.6121 0.1377 6.8498 17 7 8.7533 0.0113 6.2062 18 14 7.5989 0.7368 8.6190 19 1 7.7008 -0.4267 9.5363 20 1 8.7519 1.6456 8.8426 21 1 6.3338 1.4674 8.8849 22 1 -0.3633 0.0776 1.0247 23 1 -0.3634 0.8487 -0.5795 24 1 -0.3634 -0.9262 -0.4452 25 1 3.1719 -0.8770 -1.2680 26 1 1.6113 -1.8596 -1.2677 27 1 4.0501 -3.6792 1.3803 28 1 3.9688 -3.5551 3.1540 29 1 2.5756 -3.0611 2.1626 30 1 6.0966 -2.2846 2.8407 31 1 5.9614 -0.6039 2.2704 32 1 4.5286 -0.0580 4.2191 33 1 4.6638 -1.7387 4.7894 34 1 7.2689 -0.7057 4.4422 35 1 9.5875 0.2289 6.6509 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481205002.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:38 Heat of formation + Delta-G solvation = -23.714021 kcal Electronic energy + Delta-G solvation = -15424.745889 eV Core-core repulsion = 12844.033932 eV Total energy + Delta-G solvation = -2580.711956 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.22795 -38.19046 -37.12689 -36.09418 -33.42679 -30.40277 -29.32508 -27.52758 -26.22242 -24.46679 -22.92506 -21.63021 -20.04899 -19.24452 -18.35819 -17.33340 -16.78522 -16.33748 -15.74507 -15.38957 -15.14241 -14.76566 -14.75485 -14.06279 -13.97401 -13.64002 -13.25648 -13.10855 -12.91505 -12.88908 -12.69727 -12.38977 -12.28280 -12.15477 -11.90329 -11.31445 -11.01413 -10.97656 -10.80521 -9.72602 -9.10747 -8.00652 -5.32212 1.43796 1.45795 1.47781 1.56426 1.92722 2.53666 2.85165 3.32417 3.48929 3.77628 3.86484 4.02231 4.04165 4.17230 4.20046 4.39516 4.43355 4.51207 4.69331 4.76828 4.86966 4.93177 4.96169 4.98893 5.02834 5.10486 5.23625 5.39318 5.43349 5.51246 6.20631 6.38775 7.14544 7.26675 7.97310 8.23542 9.22818 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.047563 B = 0.004814 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.546462 B = 5815.340820 C = 6007.363150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.136 4.136 3 H 0.084 0.916 4 C -0.127 4.127 5 C -0.193 4.193 6 H 0.155 0.845 7 C 0.526 3.474 8 O -0.594 6.594 9 N -0.608 5.608 10 C 0.072 3.928 11 C 0.121 3.879 12 C 0.150 3.850 13 N -0.744 5.744 14 C -0.255 4.255 15 H 0.073 0.927 16 C -0.072 4.072 17 N -0.968 5.968 18 Si 0.980 3.020 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.272 1.272 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.141 0.859 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.056 0.944 32 H -0.004 1.004 33 H 0.032 0.968 34 H 0.376 0.624 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.124 -8.564 -13.696 23.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.155 4.155 3 H 0.102 0.898 4 C -0.164 4.164 5 C -0.213 4.213 6 H 0.173 0.827 7 C 0.317 3.683 8 O -0.475 6.475 9 N -0.340 5.340 10 C -0.069 4.069 11 C -0.003 4.003 12 C 0.022 3.978 13 N -0.387 5.387 14 C -0.387 4.387 15 H 0.091 0.909 16 C -0.264 4.264 17 N -0.618 5.618 18 Si 0.808 3.192 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.197 1.197 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.158 0.842 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.075 0.925 32 H 0.014 0.986 33 H 0.049 0.951 34 H 0.208 0.792 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.981 -7.967 -13.567 23.149 hybrid contribution 0.971 0.624 1.014 1.536 sum -16.011 -7.343 -12.552 21.629 Atomic orbital electron populations 1.21380 0.89886 1.03568 1.02462 1.22444 0.96881 0.93991 1.02213 0.89817 1.23205 1.02687 1.01201 0.89353 1.22390 0.95856 1.06358 0.96709 0.82732 1.20594 0.85896 0.83793 0.78067 1.90690 1.70022 1.23227 1.63542 1.47857 1.23059 1.12127 1.50915 1.22148 1.01033 0.80102 1.03611 1.21344 0.85958 1.01348 0.91656 1.20939 0.88436 0.96217 0.92204 1.42400 1.03860 1.80276 1.12173 1.19601 0.93163 1.36208 0.89682 0.90930 1.25651 0.94857 1.02884 1.03033 1.69825 0.97400 1.56220 1.38358 0.85054 0.77054 0.77777 0.79320 1.20599 1.21806 1.19708 0.92158 0.91233 0.90068 0.89792 0.84157 0.90312 0.90518 0.88415 0.88492 0.92546 0.98571 0.95053 0.79236 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 10.19 71.98 0.73 -0.81 16 2 C -0.14 -2.74 5.92 -10.77 -0.06 -2.80 16 3 H 0.08 2.24 7.67 -2.38 -0.02 2.22 16 4 C -0.13 -2.05 9.88 30.62 0.30 -1.75 16 5 C -0.19 -3.96 5.00 -11.54 -0.06 -4.02 16 6 H 0.16 2.16 6.45 -2.39 -0.02 2.15 16 7 C 0.53 16.81 7.46 87.66 0.65 17.46 16 8 O -0.59 -25.54 15.84 -3.04 -0.05 -25.59 16 9 N -0.61 -17.74 2.87 -846.76 -2.43 -20.17 16 10 C 0.07 1.27 10.26 127.77 1.31 2.58 16 11 C 0.12 4.44 5.52 86.38 0.48 4.92 16 12 C 0.15 6.74 6.58 86.38 0.57 7.31 16 13 N -0.74 -40.96 5.60 -343.45 -1.92 -42.89 16 14 C -0.26 -15.15 9.99 84.03 0.84 -14.31 16 15 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 16 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 17 N -0.97 -61.03 13.06 21.65 0.28 -60.75 16 18 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 21 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.08 0.70 7.90 -2.39 -0.02 0.68 16 25 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.14 1.24 8.05 -2.39 -0.02 1.22 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.36 8.07 -2.39 -0.02 1.34 16 29 H 0.10 1.19 6.00 -2.39 -0.01 1.17 16 30 H 0.10 3.16 8.07 -2.39 -0.02 3.14 16 31 H 0.06 2.39 7.42 -2.39 -0.02 2.37 16 32 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.38 21.56 7.67 -92.71 -0.71 20.85 16 35 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -76.92 296.85 3.49 -73.43 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.36 Total: 21.70 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 5.23 Total: 4.76 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -4.07 Total: -123.80 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -76.92 3.49 -73.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481205002.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.714 kcal (2) G-P(sol) polarization free energy of solvation -76.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds