Wall clock time and date at job start Mon Mar 30 2020 02:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47349 * 2 1 4 4 H 1.09004 * 109.46984 * 54.99988 * 3 2 1 5 5 C 1.52999 * 109.46914 * 294.99894 * 3 2 1 6 6 C 1.50698 * 109.47314 * 174.99743 * 3 2 1 7 7 O 1.21280 * 119.99679 * 359.97438 * 6 3 2 8 8 N 1.34768 * 120.00045 * 180.02562 * 6 3 2 9 9 C 1.46503 * 120.00164 * 179.97438 * 8 6 3 10 10 C 1.53950 * 113.74146 * 106.26045 * 9 8 6 11 11 N 1.47805 * 86.03824 * 90.88395 * 10 9 8 12 12 C 1.36942 * 134.45487 * 204.64668 * 11 10 9 13 13 H 1.08002 * 119.99602 * 179.86453 * 12 11 10 14 14 C 1.38807 * 120.00184 * 359.86555 * 12 11 10 15 15 N 1.31617 * 119.99858 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00250 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47017 * 89.99413 * 16 14 12 18 18 H 1.48498 * 109.47093 * 210.00245 * 16 14 12 19 19 H 1.48508 * 109.46865 * 329.99904 * 16 14 12 20 20 C 1.47582 * 91.05413 * 24.54887 * 11 10 9 21 21 H 1.08999 * 109.46925 * 300.00517 * 1 2 3 22 22 H 1.09004 * 109.46533 * 60.00172 * 1 2 3 23 23 H 1.08997 * 109.46945 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47401 * 239.99686 * 2 1 3 25 25 H 1.09004 * 109.47039 * 119.99680 * 2 1 3 26 26 H 1.09003 * 109.46743 * 179.97438 * 5 3 2 27 27 H 1.08994 * 109.47245 * 299.99725 * 5 3 2 28 28 H 1.09006 * 109.47323 * 60.00130 * 5 3 2 29 29 H 0.97006 * 120.00313 * 0.02562 * 8 6 3 30 30 H 1.09002 * 112.94232 * 334.66719 * 9 8 6 31 31 H 1.08999 * 113.76704 * 205.15172 * 10 9 8 32 32 H 1.09002 * 113.76463 * 336.53966 * 10 9 8 33 33 H 0.97002 * 120.00155 * 180.02562 * 15 14 12 34 34 H 1.08999 * 113.77186 * 221.15323 * 20 11 10 35 35 H 1.09004 * 113.76624 * 89.74800 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5420 1.4443 0.1239 7 8 4.1450 0.3951 0.2047 8 7 4.2149 2.6117 0.1459 9 6 5.6749 2.6135 0.2669 10 6 6.4048 2.9697 -1.0409 11 7 6.3440 4.3705 -0.5732 12 6 6.3653 5.5907 -1.1943 13 1 6.3033 6.4959 -0.6085 14 6 6.4666 5.6643 -2.5767 15 7 6.5417 4.5611 -3.2907 16 14 6.4964 7.3288 -3.4239 17 1 7.9002 7.7978 -3.5445 18 1 5.8973 7.2063 -4.7772 19 1 5.7153 8.3057 -2.6234 20 6 6.2486 3.9261 0.8309 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.9984 3.1543 -1.3071 27 1 2.0700 1.5875 -2.1491 28 1 0.5490 2.1253 -1.3970 29 1 3.7325 3.4509 0.0823 30 1 6.0618 1.7195 0.7560 31 1 7.4172 2.5704 -1.1018 32 1 5.8163 2.7789 -1.9384 33 1 6.6129 4.6124 -4.2567 34 1 5.5356 4.4977 1.4251 35 1 7.2150 3.8084 1.3210 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481543683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:56 Heat of formation + Delta-G solvation = 1.061121 kcal Electronic energy + Delta-G solvation = -15986.109179 eV Core-core repulsion = 13406.471553 eV Total energy + Delta-G solvation = -2579.637625 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67603 -37.65532 -35.16405 -33.22535 -31.79902 -29.57984 -27.44292 -25.20233 -24.80243 -23.25316 -21.59214 -19.46022 -19.19760 -16.89389 -16.61511 -15.56762 -15.21605 -14.84875 -14.32901 -13.86835 -13.69007 -13.27605 -12.84874 -12.69990 -12.44537 -12.02387 -11.70868 -11.49004 -11.44004 -11.22643 -10.88138 -10.73149 -10.61778 -10.55816 -10.23053 -9.83113 -9.49739 -9.32660 -8.83590 -8.31781 -6.90727 -5.77215 -3.10996 3.07641 3.37157 3.41999 3.44260 3.67524 4.43592 4.83841 4.96994 5.02294 5.13212 5.38794 5.45243 5.47472 5.52595 5.60972 5.67584 5.87324 5.98313 6.03539 6.11432 6.15105 6.26476 6.36755 6.41639 6.44240 6.53961 6.87922 7.23337 7.36259 7.60924 7.96057 8.10138 8.72914 9.02598 9.69323 10.57829 11.39014 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.006782 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.821261 B = 4127.676525 C = 4586.324393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 C -0.110 4.110 4 H 0.092 0.908 5 C -0.146 4.146 6 C 0.515 3.485 7 O -0.554 6.554 8 N -0.692 5.692 9 C 0.089 3.911 10 C 0.151 3.849 11 N -0.611 5.611 12 C -0.226 4.226 13 H 0.079 0.921 14 C -0.006 4.006 15 N -0.918 5.918 16 Si 0.910 3.090 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.110 3.890 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.403 0.597 30 H 0.088 0.912 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.253 0.747 34 H 0.046 0.954 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.358 -5.095 6.644 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C -0.131 4.131 4 H 0.110 0.890 5 C -0.203 4.203 6 C 0.301 3.699 7 O -0.432 6.432 8 N -0.341 5.341 9 C -0.017 4.017 10 C 0.025 3.975 11 N -0.338 5.338 12 C -0.354 4.354 13 H 0.097 0.903 14 C -0.203 4.203 15 N -0.565 5.565 16 Si 0.741 3.259 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.207 1.207 20 C -0.017 4.017 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.237 0.763 30 H 0.105 0.895 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.908 -5.615 6.422 13.074 hybrid contribution 0.102 1.451 -0.621 1.581 sum -9.806 -4.165 5.801 12.131 Atomic orbital electron populations 1.21846 0.95839 1.01551 1.01778 1.21322 0.94938 0.94570 1.03371 1.21324 0.92416 0.98954 1.00414 0.88988 1.21824 1.01629 1.00929 0.95938 1.20581 0.89690 0.83767 0.75868 1.90646 1.70434 1.31529 1.50593 1.45557 1.07275 1.08422 1.72887 1.22840 0.80241 0.98142 1.00481 1.22736 0.96403 0.83348 0.95045 1.46156 1.85926 1.01895 0.99852 1.19011 1.43853 0.82964 0.89552 0.90327 1.24780 1.02335 0.97103 0.96059 1.69834 1.56018 1.25379 1.05279 0.86154 0.77658 0.83109 0.79010 1.21641 1.21668 1.20650 1.22918 0.97363 0.91764 0.89627 0.92879 0.92441 0.92737 0.91344 0.91329 0.91713 0.91955 0.91659 0.76256 0.89458 0.94829 0.90519 0.93642 0.93548 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 37.16 0.36 -1.07 16 2 C -0.10 -1.27 4.75 -26.73 -0.13 -1.39 16 3 C -0.11 -1.42 2.72 -91.77 -0.25 -1.67 16 4 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 5 C -0.15 -1.81 8.84 37.16 0.33 -1.48 16 6 C 0.51 8.85 7.15 -10.99 -0.08 8.78 16 7 O -0.55 -11.35 15.54 5.56 0.09 -11.27 16 8 N -0.69 -12.29 5.27 -55.34 -0.29 -12.58 16 9 C 0.09 1.76 4.40 -70.14 -0.31 1.46 16 10 C 0.15 3.65 7.33 -2.84 -0.02 3.63 16 11 N -0.61 -15.35 3.70 -177.87 -0.66 -16.01 16 12 C -0.23 -6.22 10.70 -15.06 -0.16 -6.38 16 13 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 14 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 15 N -0.92 -27.21 11.39 55.49 0.63 -26.58 16 16 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.11 2.20 8.68 -2.96 -0.03 2.17 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 0.89 7.95 -51.93 -0.41 0.47 16 26 H 0.06 0.85 7.57 -51.93 -0.39 0.45 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 29 H 0.40 6.75 8.16 -40.82 -0.33 6.41 16 30 H 0.09 1.69 7.51 -51.93 -0.39 1.30 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.08 2.07 7.16 -51.93 -0.37 1.70 16 33 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 289.28 15.07 4.36 4.36 Total: -1.00 -31.67 289.28 -6.79 -38.46 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.51 Total: 2.96 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.38 Total: 3.77 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.32 Total: -55.17 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.67 -6.79 -38.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481543683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.519 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds