Wall clock time and date at job start Mon Mar 30 2020 02:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47349 * 2 1 4 4 H 1.09004 * 109.46984 * 54.99988 * 3 2 1 5 5 C 1.52999 * 109.46914 * 294.99894 * 3 2 1 6 6 C 1.50698 * 109.47314 * 174.99743 * 3 2 1 7 7 O 1.21280 * 119.99679 * 359.97438 * 6 3 2 8 8 N 1.34768 * 120.00045 * 180.02562 * 6 3 2 9 9 C 1.46503 * 120.00164 * 179.97438 * 8 6 3 10 10 C 1.53950 * 113.74146 * 106.26045 * 9 8 6 11 11 N 1.47805 * 86.03824 * 90.88395 * 10 9 8 12 12 C 1.36942 * 134.45487 * 204.64668 * 11 10 9 13 13 H 1.08002 * 119.99602 * 179.86453 * 12 11 10 14 14 C 1.38807 * 120.00184 * 359.86555 * 12 11 10 15 15 N 1.31617 * 119.99858 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00250 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47017 * 89.99413 * 16 14 12 18 18 H 1.48498 * 109.47093 * 210.00245 * 16 14 12 19 19 H 1.48508 * 109.46865 * 329.99904 * 16 14 12 20 20 C 1.47582 * 91.05413 * 24.54887 * 11 10 9 21 21 H 1.08999 * 109.46925 * 300.00517 * 1 2 3 22 22 H 1.09004 * 109.46533 * 60.00172 * 1 2 3 23 23 H 1.08997 * 109.46945 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47401 * 239.99686 * 2 1 3 25 25 H 1.09004 * 109.47039 * 119.99680 * 2 1 3 26 26 H 1.09003 * 109.46743 * 179.97438 * 5 3 2 27 27 H 1.08994 * 109.47245 * 299.99725 * 5 3 2 28 28 H 1.09006 * 109.47323 * 60.00130 * 5 3 2 29 29 H 0.97006 * 120.00313 * 0.02562 * 8 6 3 30 30 H 1.09002 * 112.94232 * 334.66719 * 9 8 6 31 31 H 1.08999 * 113.76704 * 205.15172 * 10 9 8 32 32 H 1.09002 * 113.76463 * 336.53966 * 10 9 8 33 33 H 0.97002 * 120.00155 * 180.02562 * 15 14 12 34 34 H 1.08999 * 113.77186 * 221.15323 * 20 11 10 35 35 H 1.09004 * 113.76624 * 89.74800 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 3.5420 1.4443 0.1239 7 8 4.1450 0.3951 0.2047 8 7 4.2149 2.6117 0.1459 9 6 5.6749 2.6135 0.2669 10 6 6.4048 2.9697 -1.0409 11 7 6.3440 4.3705 -0.5732 12 6 6.3653 5.5907 -1.1943 13 1 6.3033 6.4959 -0.6085 14 6 6.4666 5.6643 -2.5767 15 7 6.5417 4.5611 -3.2907 16 14 6.4964 7.3288 -3.4239 17 1 7.9002 7.7978 -3.5445 18 1 5.8973 7.2063 -4.7772 19 1 5.7153 8.3057 -2.6234 20 6 6.2486 3.9261 0.8309 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.9984 3.1543 -1.3071 27 1 2.0700 1.5875 -2.1491 28 1 0.5490 2.1253 -1.3970 29 1 3.7325 3.4509 0.0823 30 1 6.0618 1.7195 0.7560 31 1 7.4172 2.5704 -1.1018 32 1 5.8163 2.7789 -1.9384 33 1 6.6129 4.6124 -4.2567 34 1 5.5356 4.4977 1.4251 35 1 7.2150 3.8084 1.3210 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481543683.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:56 Heat of formation + Delta-G solvation = -20.427355 kcal Electronic energy + Delta-G solvation = -15987.040989 eV Core-core repulsion = 13406.471553 eV Total energy + Delta-G solvation = -2580.569436 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14259 -39.32159 -36.29075 -34.94126 -33.66669 -30.63225 -29.33035 -26.59812 -26.30957 -25.00111 -22.89168 -20.91964 -20.68355 -18.76431 -18.07192 -17.07488 -16.86472 -16.35965 -15.69393 -15.63395 -15.01942 -14.56833 -14.43956 -14.30912 -13.65054 -13.31295 -13.17190 -12.93625 -12.79325 -12.54188 -12.50063 -12.37635 -12.09669 -11.73613 -11.67165 -11.54507 -11.38887 -10.96947 -10.66171 -9.90547 -8.94253 -7.88750 -5.23771 1.46481 1.48299 1.56842 1.68889 2.29485 2.47530 3.27184 3.41099 3.73689 3.85413 3.92315 4.04607 4.40754 4.49213 4.54299 4.58174 4.66409 4.76741 4.78446 4.89263 4.96957 5.06697 5.12773 5.15978 5.24343 5.27129 5.40810 5.49077 5.53916 5.75451 5.91544 6.67907 6.90422 7.32763 7.61396 8.55379 9.27529 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.033898 B = 0.006782 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.821261 B = 4127.676525 C = 4586.324393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C -0.101 4.101 4 H 0.123 0.877 5 C -0.142 4.142 6 C 0.510 3.490 7 O -0.590 6.590 8 N -0.691 5.691 9 C 0.111 3.889 10 C 0.145 3.855 11 N -0.634 5.634 12 C -0.231 4.231 13 H 0.089 0.911 14 C -0.067 4.067 15 N -0.955 5.955 16 Si 0.978 3.022 17 H -0.290 1.290 18 H -0.297 1.297 19 H -0.263 1.263 20 C 0.119 3.881 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.096 0.904 29 H 0.409 0.591 30 H 0.095 0.905 31 H 0.019 0.981 32 H 0.040 0.960 33 H 0.246 0.754 34 H 0.071 0.929 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.028 -4.063 8.059 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.141 4.141 3 C -0.122 4.122 4 H 0.141 0.859 5 C -0.199 4.199 6 C 0.298 3.702 7 O -0.470 6.470 8 N -0.340 5.340 9 C 0.004 3.996 10 C 0.018 3.982 11 N -0.361 5.361 12 C -0.359 4.359 13 H 0.107 0.893 14 C -0.260 4.260 15 N -0.604 5.604 16 Si 0.806 3.194 17 H -0.218 1.218 18 H -0.224 1.224 19 H -0.188 1.188 20 C -0.006 4.006 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.115 0.885 29 H 0.245 0.755 30 H 0.113 0.887 31 H 0.037 0.963 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.599 -4.567 7.883 14.749 hybrid contribution 0.645 1.080 -1.014 1.616 sum -10.954 -3.487 6.868 13.391 Atomic orbital electron populations 1.21806 0.93148 1.02534 1.02866 1.21312 0.97176 0.93625 1.01980 1.21384 0.88924 1.00049 1.01810 0.85900 1.21812 1.03491 0.99878 0.94731 1.21438 0.91550 0.82791 0.74382 1.90629 1.71635 1.32712 1.52071 1.45564 1.06382 1.09157 1.72874 1.22495 0.81284 0.98532 0.97322 1.22646 0.95795 0.83893 0.95822 1.46431 1.85904 1.01421 1.02356 1.19448 1.42207 0.84279 0.89998 0.89330 1.25619 1.02977 1.00434 0.96929 1.70046 1.57930 1.27549 1.04888 0.85087 0.77433 0.79333 0.77512 1.21771 1.22423 1.18770 1.23056 0.98679 0.91302 0.87578 0.91379 0.91664 0.91949 0.93308 0.92304 0.92476 0.94080 0.88543 0.75500 0.88748 0.96284 0.94186 0.94496 0.91078 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.67 71.98 0.70 -1.61 16 2 C -0.10 -2.36 4.75 30.60 0.15 -2.21 16 3 C -0.10 -2.41 2.72 -11.54 -0.03 -2.44 16 4 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 5 C -0.14 -3.29 8.84 71.98 0.64 -2.65 16 6 C 0.51 17.18 7.15 87.66 0.63 17.81 16 7 O -0.59 -24.25 15.54 -3.03 -0.05 -24.30 16 8 N -0.69 -23.87 5.27 -447.38 -2.36 -26.23 16 9 C 0.11 4.31 4.40 46.75 0.21 4.52 16 10 C 0.15 7.19 7.33 86.44 0.63 7.82 16 11 N -0.63 -31.61 3.70 -716.67 -2.65 -34.26 16 12 C -0.23 -12.58 10.70 84.03 0.90 -11.68 16 13 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 14 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 15 N -0.96 -58.11 11.39 21.65 0.25 -57.86 16 16 Si 0.98 45.13 29.55 68.60 2.03 47.16 16 17 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 18 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 19 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 20 C 0.12 4.53 8.68 86.49 0.75 5.28 16 21 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 22 H 0.06 0.94 6.57 -2.39 -0.02 0.92 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.46 7.95 -2.38 -0.02 1.44 16 26 H 0.06 1.41 7.57 -2.39 -0.02 1.39 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 1.64 6.57 -2.38 -0.02 1.63 16 29 H 0.41 13.11 8.16 -92.70 -0.76 12.35 16 30 H 0.09 3.59 7.51 -2.39 -0.02 3.58 16 31 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 2.26 7.16 -2.39 -0.02 2.24 16 33 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -69.09 289.28 2.56 -66.53 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.31 Total: 17.42 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 5.03 Total: 11.55 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -4.76 Total: -118.36 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.05 Total: -24.30 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.09 2.56 -66.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481543683.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.105 kcal (2) G-P(sol) polarization free energy of solvation -69.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds