Wall clock time and date at job start Mon Mar 30 2020 03:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47129 * 2 1 4 4 O 1.21277 * 120.00090 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00383 * 179.97438 * 3 2 1 6 6 C 1.46494 * 120.00531 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.47008 * 325.00296 * 6 5 3 8 8 C 1.52996 * 109.47509 * 205.00222 * 6 5 3 9 9 N 1.46498 * 109.47059 * 54.99655 * 8 6 5 10 10 C 1.36943 * 119.99752 * 179.72430 * 9 8 6 11 11 H 1.08002 * 119.99793 * 0.27665 * 10 9 8 12 12 C 1.38811 * 120.00012 * 180.27737 * 10 9 8 13 13 N 1.31624 * 119.99698 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00072 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47159 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47290 * 120.00044 * 14 12 10 17 17 H 1.48503 * 109.47163 * 240.00049 * 14 12 10 18 18 C 1.53004 * 109.47171 * 84.99693 * 6 5 3 19 19 C 1.53005 * 117.49613 * 8.75247 * 18 6 5 20 20 C 1.52997 * 117.49957 * 300.09370 * 18 6 5 21 21 H 1.08997 * 109.46926 * 60.00393 * 1 2 3 22 22 H 1.09008 * 109.46701 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47013 * 300.00072 * 1 2 3 24 24 H 1.09001 * 109.47603 * 240.00104 * 2 1 3 25 25 H 1.09005 * 109.47626 * 120.00017 * 2 1 3 26 26 H 0.97009 * 119.99558 * 0.02562 * 5 3 2 27 27 H 1.09004 * 109.47066 * 294.99922 * 8 6 5 28 28 H 1.08994 * 109.46974 * 175.00070 * 8 6 5 29 29 H 0.97001 * 120.00384 * 0.02562 * 9 8 6 30 30 H 0.96999 * 119.99739 * 180.02562 * 13 12 10 31 31 H 1.08997 * 115.54876 * 154.41877 * 18 6 5 32 32 H 1.09005 * 117.49448 * 359.97438 * 19 18 6 33 33 H 1.08994 * 117.49848 * 145.02087 * 19 18 6 34 34 H 1.08997 * 117.49655 * 214.97733 * 20 18 6 35 35 H 1.09004 * 117.50130 * 359.97438 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0483 0.0000 7 1 3.1734 3.6711 -0.5902 8 6 5.2486 3.0931 -0.6090 9 7 5.2227 2.4821 -1.9402 10 6 6.3703 2.4133 -2.6844 11 1 7.2952 2.8054 -2.2880 12 6 6.3447 1.8395 -3.9481 13 7 5.2173 1.3620 -4.4313 14 14 7.9101 1.7450 -4.9629 15 1 9.0323 2.3467 -4.1989 16 1 8.2212 0.3240 -5.2618 17 1 7.7214 2.4886 -6.2344 18 6 3.8964 3.5720 1.4367 19 6 3.6552 2.5660 2.5641 20 6 2.5844 3.6055 2.2231 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.9877 0.9298 0.0005 27 1 5.9397 2.5431 0.0298 28 1 5.5760 4.1294 -0.6911 29 1 4.3919 2.1302 -2.2964 30 1 5.1994 0.9608 -5.3142 31 1 4.6140 4.3715 1.6206 32 1 3.4600 1.5314 2.2821 33 1 4.2137 2.7041 3.4898 34 1 2.4391 4.4269 2.9246 35 1 1.6850 3.2549 1.7168 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699569316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:13 Heat of formation + Delta-G solvation = -8.541767 kcal Electronic energy + Delta-G solvation = -16048.839288 eV Core-core repulsion = 13468.785250 eV Total energy + Delta-G solvation = -2580.054038 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.91907 -37.16429 -34.88104 -33.23925 -32.51522 -31.04325 -28.18242 -24.48478 -23.76476 -22.22053 -21.46770 -20.25491 -19.57510 -17.33860 -16.72274 -16.07405 -15.66759 -14.83608 -14.63655 -13.99709 -13.57436 -13.25852 -13.03649 -12.67623 -12.42752 -11.92261 -11.66740 -11.53424 -11.32543 -11.22414 -10.94989 -10.89138 -10.83344 -10.20947 -10.06491 -9.80430 -9.56458 -9.42650 -8.93184 -8.57425 -6.97325 -5.79913 -3.09561 2.97816 3.40950 3.46859 3.49102 3.55798 4.09311 4.54956 4.92200 5.00868 5.19238 5.21863 5.24008 5.27137 5.52836 5.57088 5.71870 5.82177 5.84968 5.90722 6.03781 6.04522 6.08079 6.24656 6.31089 6.34316 6.51240 6.55346 6.71879 6.99482 7.67154 7.92482 8.38131 8.61427 9.49994 10.06006 10.41565 11.42540 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.007317 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.173784 B = 3825.994735 C = 4567.845881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.147 4.147 3 C 0.513 3.487 4 O -0.546 6.546 5 N -0.710 5.710 6 C 0.167 3.833 7 H 0.089 0.911 8 C 0.148 3.852 9 N -0.732 5.732 10 C -0.241 4.241 11 H 0.071 0.929 12 C -0.013 4.013 13 N -0.931 5.931 14 Si 0.908 3.092 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.291 1.291 18 C -0.160 4.160 19 C -0.177 4.177 20 C -0.188 4.188 21 H 0.061 0.939 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.404 0.596 27 H 0.026 0.974 28 H 0.033 0.967 29 H 0.386 0.614 30 H 0.255 0.745 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 -1.678 12.414 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.187 4.187 3 C 0.300 3.700 4 O -0.425 6.425 5 N -0.361 5.361 6 C 0.062 3.938 7 H 0.107 0.893 8 C 0.020 3.980 9 N -0.377 5.377 10 C -0.373 4.373 11 H 0.089 0.911 12 C -0.209 4.209 13 N -0.580 5.580 14 Si 0.739 3.261 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.219 1.219 18 C -0.180 4.180 19 C -0.215 4.215 20 C -0.224 4.224 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.239 0.761 27 H 0.044 0.956 28 H 0.051 0.949 29 H 0.220 0.780 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.636 -0.996 12.352 13.614 hybrid contribution 1.059 -0.503 -0.755 1.394 sum -4.578 -1.499 11.598 12.558 Atomic orbital electron populations 1.21493 0.93349 1.01145 1.03145 1.21637 0.98363 0.94387 1.04333 1.20679 0.82400 0.91594 0.75340 1.90596 1.55471 1.46415 1.50029 1.46027 1.06910 1.09085 1.74058 1.20718 0.97110 0.82621 0.93309 0.89266 1.20908 0.92002 0.97155 0.87963 1.42360 1.10232 1.71352 1.13706 1.19270 0.88622 1.32522 0.96844 0.91074 1.24756 0.97051 1.01452 0.97651 1.69681 1.24689 1.45327 1.18255 0.86109 0.82530 0.77215 0.80263 1.20556 1.21878 1.21857 1.22704 1.00487 1.02021 0.92787 1.22877 1.03626 0.96200 0.98755 1.23339 0.94774 1.01212 1.03113 0.91940 0.92477 0.92309 0.88594 0.89433 0.76058 0.95634 0.94938 0.78008 0.93545 0.87400 0.89044 0.89605 0.89854 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.20 37.16 0.34 -1.24 16 2 C -0.15 -1.81 6.42 -27.89 -0.18 -1.99 16 3 C 0.51 8.16 6.67 -10.99 -0.07 8.09 16 4 O -0.55 -10.26 13.01 5.56 0.07 -10.19 16 5 N -0.71 -11.24 3.05 -53.81 -0.16 -11.41 16 6 C 0.17 2.86 2.59 -67.93 -0.18 2.69 16 7 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 8 C 0.15 2.90 5.80 -4.04 -0.02 2.87 16 9 N -0.73 -18.10 5.43 -59.91 -0.33 -18.42 16 10 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 11 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 12 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 13 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 14 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 18 C -0.16 -2.33 5.71 -90.62 -0.52 -2.85 16 19 C -0.18 -2.31 9.74 -26.69 -0.26 -2.57 16 20 C -0.19 -2.66 9.82 -26.69 -0.26 -2.92 16 21 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 22 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 23 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.40 6.09 8.60 -40.82 -0.35 5.74 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.39 10.18 7.33 -40.82 -0.30 9.88 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.11 1.46 8.11 -51.93 -0.42 1.03 16 32 H 0.09 1.19 6.67 -51.93 -0.35 0.84 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.12 1.91 5.01 -51.93 -0.26 1.65 16 LS Contribution 289.51 15.07 4.36 4.36 Total: -1.00 -30.90 289.51 -7.17 -38.07 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.42 Total: 12.75 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -1.40 Total: -5.18 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.23 Total: -56.99 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.07 Total: -10.19 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.90 -7.17 -38.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699569316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.526 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds