Wall clock time and date at job start Mon Mar 30 2020 03:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47129 * 2 1 4 4 O 1.21277 * 120.00090 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00383 * 179.97438 * 3 2 1 6 6 C 1.46494 * 120.00531 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.47008 * 325.00296 * 6 5 3 8 8 C 1.52996 * 109.47509 * 205.00222 * 6 5 3 9 9 N 1.46498 * 109.47059 * 54.99655 * 8 6 5 10 10 C 1.36943 * 119.99752 * 179.72430 * 9 8 6 11 11 H 1.08002 * 119.99793 * 0.27665 * 10 9 8 12 12 C 1.38811 * 120.00012 * 180.27737 * 10 9 8 13 13 N 1.31624 * 119.99698 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00072 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47159 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47290 * 120.00044 * 14 12 10 17 17 H 1.48503 * 109.47163 * 240.00049 * 14 12 10 18 18 C 1.53004 * 109.47171 * 84.99693 * 6 5 3 19 19 C 1.53005 * 117.49613 * 8.75247 * 18 6 5 20 20 C 1.52997 * 117.49957 * 300.09370 * 18 6 5 21 21 H 1.08997 * 109.46926 * 60.00393 * 1 2 3 22 22 H 1.09008 * 109.46701 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47013 * 300.00072 * 1 2 3 24 24 H 1.09001 * 109.47603 * 240.00104 * 2 1 3 25 25 H 1.09005 * 109.47626 * 120.00017 * 2 1 3 26 26 H 0.97009 * 119.99558 * 0.02562 * 5 3 2 27 27 H 1.09004 * 109.47066 * 294.99922 * 8 6 5 28 28 H 1.08994 * 109.46974 * 175.00070 * 8 6 5 29 29 H 0.97001 * 120.00384 * 0.02562 * 9 8 6 30 30 H 0.96999 * 119.99739 * 180.02562 * 13 12 10 31 31 H 1.08997 * 115.54876 * 154.41877 * 18 6 5 32 32 H 1.09005 * 117.49448 * 359.97438 * 19 18 6 33 33 H 1.08994 * 117.49848 * 145.02087 * 19 18 6 34 34 H 1.08997 * 117.49655 * 214.97733 * 20 18 6 35 35 H 1.09004 * 117.50130 * 359.97438 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0483 0.0000 7 1 3.1734 3.6711 -0.5902 8 6 5.2486 3.0931 -0.6090 9 7 5.2227 2.4821 -1.9402 10 6 6.3703 2.4133 -2.6844 11 1 7.2952 2.8054 -2.2880 12 6 6.3447 1.8395 -3.9481 13 7 5.2173 1.3620 -4.4313 14 14 7.9101 1.7450 -4.9629 15 1 9.0323 2.3467 -4.1989 16 1 8.2212 0.3240 -5.2618 17 1 7.7214 2.4886 -6.2344 18 6 3.8964 3.5720 1.4367 19 6 3.6552 2.5660 2.5641 20 6 2.5844 3.6055 2.2231 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.9877 0.9298 0.0005 27 1 5.9397 2.5431 0.0298 28 1 5.5760 4.1294 -0.6911 29 1 4.3919 2.1302 -2.2964 30 1 5.1994 0.9608 -5.3142 31 1 4.6140 4.3715 1.6206 32 1 3.4600 1.5314 2.2821 33 1 4.2137 2.7041 3.4898 34 1 2.4391 4.4269 2.9246 35 1 1.6850 3.2549 1.7168 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699569316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:13 Heat of formation + Delta-G solvation = -28.680621 kcal Electronic energy + Delta-G solvation = -16049.712575 eV Core-core repulsion = 13468.785250 eV Total energy + Delta-G solvation = -2580.927324 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.20380 -38.44042 -36.55060 -34.76544 -33.67370 -32.83186 -29.81702 -26.13750 -25.12326 -23.44881 -22.95042 -21.47847 -20.85772 -19.25833 -18.02074 -17.34701 -17.09558 -16.50791 -15.90247 -15.41742 -15.22869 -14.81124 -14.63714 -14.06801 -13.64972 -13.22382 -13.12208 -12.80782 -12.69260 -12.65553 -12.55265 -12.32875 -12.04696 -11.94297 -11.83606 -11.26680 -11.00716 -10.84023 -10.67227 -9.89766 -9.01847 -7.95022 -5.24661 1.48447 1.49271 1.59196 1.72818 2.32337 2.55613 2.96804 3.39451 3.63064 3.86867 4.00671 4.11196 4.18797 4.25651 4.28913 4.44755 4.50887 4.63244 4.77548 4.84005 4.90651 5.00277 5.06340 5.09373 5.16943 5.27514 5.34156 5.41418 5.50400 5.65308 6.25991 6.66171 7.33262 7.36079 8.06248 8.30650 9.28225 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.007317 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.173784 B = 3825.994735 C = 4567.845881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.142 4.142 3 C 0.505 3.495 4 O -0.579 6.579 5 N -0.707 5.707 6 C 0.178 3.822 7 H 0.056 0.944 8 C 0.151 3.849 9 N -0.743 5.743 10 C -0.244 4.244 11 H 0.079 0.921 12 C -0.074 4.074 13 N -0.968 5.968 14 Si 0.974 3.026 15 H -0.265 1.265 16 H -0.292 1.292 17 H -0.297 1.297 18 C -0.170 4.170 19 C -0.158 4.158 20 C -0.191 4.191 21 H 0.039 0.961 22 H 0.084 0.916 23 H 0.054 0.946 24 H 0.098 0.902 25 H 0.119 0.881 26 H 0.409 0.591 27 H 0.041 0.959 28 H 0.034 0.966 29 H 0.374 0.626 30 H 0.250 0.750 31 H 0.122 0.878 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.222 -2.266 13.931 14.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.181 4.181 3 C 0.294 3.706 4 O -0.460 6.460 5 N -0.358 5.358 6 C 0.072 3.928 7 H 0.074 0.926 8 C 0.024 3.976 9 N -0.386 5.386 10 C -0.375 4.375 11 H 0.097 0.903 12 C -0.267 4.267 13 N -0.619 5.619 14 Si 0.803 3.197 15 H -0.189 1.189 16 H -0.219 1.219 17 H -0.225 1.225 18 C -0.189 4.189 19 C -0.196 4.196 20 C -0.228 4.228 21 H 0.059 0.941 22 H 0.103 0.897 23 H 0.073 0.927 24 H 0.117 0.883 25 H 0.137 0.863 26 H 0.245 0.755 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.206 0.794 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.571 -1.576 13.912 14.729 hybrid contribution 0.706 -0.275 -1.176 1.399 sum -3.865 -1.851 12.736 13.438 Atomic orbital electron populations 1.21489 0.92992 1.02539 1.01852 1.21695 0.98587 0.91914 1.05916 1.21378 0.81973 0.92877 0.74367 1.90587 1.56166 1.47823 1.51459 1.46006 1.07212 1.08658 1.73927 1.20426 0.94699 0.83101 0.94565 0.92598 1.21020 0.93909 0.96751 0.85948 1.42528 1.09059 1.71621 1.15374 1.19675 0.89594 1.31175 0.97090 0.90332 1.25562 0.99995 1.02051 0.99051 1.69836 1.26771 1.46856 1.18412 0.85067 0.79426 0.76872 0.78315 1.18940 1.21925 1.22482 1.22622 1.01464 1.03412 0.91432 1.22971 1.02266 0.95687 0.98628 1.23277 0.93784 1.02474 1.03240 0.94143 0.89671 0.92722 0.88326 0.86255 0.75473 0.94141 0.94831 0.79355 0.94093 0.86055 0.88977 0.87257 0.88159 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.20 71.98 0.66 -2.29 16 2 C -0.14 -3.29 6.42 29.85 0.19 -3.09 16 3 C 0.51 15.99 6.67 87.66 0.58 16.58 16 4 O -0.58 -22.24 13.01 -3.02 -0.04 -22.28 16 5 N -0.71 -22.08 3.05 -442.55 -1.35 -23.43 16 6 C 0.18 6.05 2.59 44.99 0.12 6.16 16 7 H 0.06 2.28 7.58 -2.39 -0.02 2.26 16 8 C 0.15 5.79 5.80 86.38 0.50 6.29 16 9 N -0.74 -36.76 5.43 -343.46 -1.87 -38.63 16 10 C -0.24 -13.28 9.99 84.03 0.84 -12.44 16 11 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 12 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 13 N -0.97 -58.68 13.06 21.65 0.28 -58.39 16 14 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 15 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 16 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 17 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 18 C -0.17 -4.68 5.71 -10.79 -0.06 -4.74 16 19 C -0.16 -3.70 9.74 30.62 0.30 -3.40 16 20 C -0.19 -5.14 9.82 30.62 0.30 -4.84 16 21 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 22 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 24 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.41 11.93 8.60 -92.70 -0.80 11.13 16 27 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.37 20.09 7.33 -92.71 -0.68 19.41 16 30 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.12 3.01 8.11 -2.39 -0.02 2.99 16 32 H 0.09 2.15 6.67 -2.38 -0.02 2.13 16 33 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.09 3.04 5.01 -2.38 -0.01 3.03 16 Total: -1.00 -66.30 289.51 2.56 -63.74 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: -0.39 Total: 36.97 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 3.90 Total: -5.51 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -2.94 Total: -120.46 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.04 Total: -22.28 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -66.30 2.56 -63.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699569316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.062 kcal (2) G-P(sol) polarization free energy of solvation -66.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds