Wall clock time and date at job start Mon Mar 30 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99908 * 2 1 4 4 O 1.21279 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00221 * 180.02562 * 3 2 1 6 6 C 1.53112 * 109.52571 * 180.02562 * 5 3 2 7 7 C 1.53031 * 109.28065 * 177.62499 * 6 5 3 8 8 N 1.46850 * 109.52191 * 300.81936 * 7 6 5 9 9 C 1.46904 * 111.00104 * 185.83867 * 8 7 6 10 10 C 1.50697 * 109.46891 * 170.00174 * 9 8 7 11 11 H 1.07991 * 120.00449 * 359.72239 * 10 9 8 12 12 C 1.37885 * 119.99686 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 9 15 15 H 1.48498 * 109.47416 * 59.99812 * 14 12 10 16 16 H 1.48508 * 109.46609 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46903 * 299.99397 * 14 12 10 18 18 C 1.46846 * 111.19767 * 61.74317 * 8 7 6 19 19 C 1.53043 * 109.52316 * 298.25581 * 18 8 7 20 20 H 1.09003 * 109.47333 * 59.99677 * 1 2 3 21 21 H 1.08996 * 109.47059 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46680 * 299.99946 * 1 2 3 23 23 H 0.97000 * 120.00216 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.51869 * 59.87458 * 5 3 2 25 25 H 1.09007 * 109.50366 * 57.67950 * 6 5 3 26 26 H 1.09001 * 109.50045 * 297.56621 * 6 5 3 27 27 H 1.08997 * 109.46601 * 180.80276 * 7 6 5 28 28 H 1.09006 * 109.45698 * 60.82720 * 7 6 5 29 29 H 1.08998 * 109.47046 * 49.99675 * 9 8 7 30 30 H 1.09001 * 109.47014 * 289.99875 * 9 8 7 31 31 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.46465 * 58.27194 * 18 8 7 33 33 H 1.08998 * 109.46421 * 178.24606 * 18 8 7 34 34 H 1.08999 * 109.50530 * 299.24210 * 19 18 8 35 35 H 1.08996 * 109.50505 * 179.12322 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1576 2.6104 0.0002 7 6 5.6868 2.6043 0.0594 8 7 6.1280 1.9090 1.2753 9 6 7.5850 2.0037 1.4366 10 6 7.9729 1.5001 2.8030 11 1 7.2127 1.1493 3.4851 12 6 9.2979 1.4930 3.1845 13 7 10.2237 1.9206 2.3540 14 14 9.7779 0.8758 4.8810 15 1 9.3536 -0.5393 5.0314 16 1 11.2509 0.9716 5.0440 17 1 9.1109 1.7054 5.9165 18 6 5.6886 0.5078 1.2747 19 6 4.1594 0.4513 1.2518 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9501 -0.8400 -0.0004 24 1 4.0098 0.6519 -0.8894 25 1 3.7618 3.1364 0.8690 26 1 3.8307 3.1129 -0.9102 27 1 6.0538 3.6305 0.0745 28 1 6.0820 2.0901 -0.8167 29 1 7.8955 3.0432 1.3308 30 1 8.0751 1.3988 0.6738 31 1 11.1558 1.9152 2.6223 32 1 6.0839 0.0036 0.3930 33 1 6.0568 0.0113 2.1725 34 1 3.7636 0.9433 2.1402 35 1 3.8338 -0.5888 1.2356 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042228625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:13 Heat of formation + Delta-G solvation = -47.362899 kcal Electronic energy + Delta-G solvation = -15878.104160 eV Core-core repulsion = 13296.366711 eV Total energy + Delta-G solvation = -2581.737449 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.99905 -37.71778 -34.64366 -33.63120 -31.97159 -30.35221 -27.84058 -26.46512 -24.04973 -22.58290 -21.52678 -20.34737 -19.24508 -17.26883 -16.29754 -15.93468 -15.38213 -14.93719 -14.21791 -14.19756 -13.98646 -13.51339 -13.13645 -12.83448 -12.46108 -12.38955 -11.97951 -11.78817 -11.40758 -11.02244 -10.76471 -10.68603 -10.47819 -10.36049 -10.09948 -9.83170 -9.50127 -9.20046 -9.14280 -8.42616 -7.20892 -6.01966 -4.03444 2.70369 3.21528 3.33634 3.37968 3.40879 4.42782 4.73294 4.87693 5.00150 5.10603 5.19432 5.33657 5.34679 5.49890 5.63058 5.68864 5.86494 5.98084 6.02076 6.14335 6.23217 6.31822 6.45761 6.54597 6.66674 6.73644 7.32512 7.35977 7.42134 7.81213 8.11515 8.22198 8.24731 8.57094 9.04105 9.60771 11.08881 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.049769 B = 0.005613 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.465946 B = 4987.425389 C = 5337.603856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.740 5.740 3 C 0.519 3.481 4 O -0.540 6.540 5 C -0.107 4.107 6 C -0.092 4.092 7 C 0.055 3.945 8 N -0.537 5.537 9 C 0.193 3.807 10 C -0.508 4.508 11 H 0.063 0.937 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.066 3.934 19 C -0.105 4.105 20 H 0.056 0.944 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.402 0.598 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.021 0.979 29 H 0.031 0.969 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.021 0.979 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.474 -5.962 -5.502 16.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.393 5.393 3 C 0.306 3.694 4 O -0.417 6.417 5 C -0.128 4.128 6 C -0.131 4.131 7 C -0.074 4.074 8 N -0.263 5.263 9 C 0.068 3.932 10 C -0.547 4.547 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.539 5.539 14 Si 0.726 3.274 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.062 4.062 19 C -0.144 4.144 20 H 0.075 0.925 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.236 0.764 24 H 0.109 0.891 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.008 0.992 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.944 -4.924 -5.117 16.545 hybrid contribution 0.950 -1.187 0.144 1.527 sum -13.994 -6.111 -4.973 16.060 Atomic orbital electron populations 1.21494 0.80137 1.01880 1.02148 1.45880 1.07503 1.09068 1.76801 1.20942 0.90494 0.83244 0.74678 1.90673 1.70617 1.31410 1.48976 1.21438 0.90133 1.00353 1.00868 1.21402 0.95440 0.93509 1.02721 1.22041 0.93864 0.99568 0.91916 1.62032 1.17387 1.12356 1.34477 1.19709 0.79880 0.97102 0.96515 1.21134 0.92041 1.41807 0.99688 0.91911 1.24991 0.96514 0.95631 0.97449 1.69952 1.00858 1.47346 1.35709 0.86566 0.77166 0.79266 0.84429 1.20307 1.21377 1.20160 1.21914 0.92131 0.90896 1.01278 1.21642 0.97591 0.98644 0.96491 0.92500 0.90919 0.92363 0.76444 0.89134 0.90546 0.91813 0.90988 0.96092 0.95138 0.99151 0.92879 0.96119 0.89439 0.90825 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 10.70 59.85 0.64 1.40 16 2 N -0.74 -7.58 5.62 -67.07 -0.38 -7.96 16 3 C 0.52 7.29 7.16 -10.98 -0.08 7.21 16 4 O -0.54 -9.59 15.98 5.56 0.09 -9.50 16 5 C -0.11 -1.49 2.59 -91.65 -0.24 -1.72 16 6 C -0.09 -1.49 4.68 -26.66 -0.12 -1.61 16 7 C 0.05 1.01 5.46 -3.84 -0.02 0.99 16 8 N -0.54 -11.56 4.65 -236.11 -1.10 -12.66 16 9 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 10 C -0.51 -14.18 8.42 -34.44 -0.29 -14.47 16 11 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 14 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.07 1.23 5.30 -3.83 -0.02 1.21 16 19 C -0.11 -1.53 5.26 -26.65 -0.14 -1.67 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.40 3.04 8.32 -40.82 -0.34 2.70 16 24 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.33 8.02 -51.93 -0.42 0.92 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.85 7.99 -51.93 -0.41 0.44 16 30 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 1.76 6.70 -51.93 -0.35 1.42 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 LS Contribution 285.57 15.07 4.30 4.30 Total: -1.00 -32.26 285.57 -7.41 -39.66 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -5.65 Total: -2.21 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.39 Total: -2.20 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.74 Total: -46.56 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.26 -7.41 -39.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042228625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.699 kcal (2) G-P(sol) polarization free energy of solvation -32.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds