Wall clock time and date at job start Mon Mar 30 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 119.99908 * 2 1 4 4 O 1.21279 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00221 * 180.02562 * 3 2 1 6 6 C 1.53112 * 109.52571 * 180.02562 * 5 3 2 7 7 C 1.53031 * 109.28065 * 177.62499 * 6 5 3 8 8 N 1.46850 * 109.52191 * 300.81936 * 7 6 5 9 9 C 1.46904 * 111.00104 * 185.83867 * 8 7 6 10 10 C 1.50697 * 109.46891 * 170.00174 * 9 8 7 11 11 H 1.07991 * 120.00449 * 359.72239 * 10 9 8 12 12 C 1.37885 * 119.99686 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 9 15 15 H 1.48498 * 109.47416 * 59.99812 * 14 12 10 16 16 H 1.48508 * 109.46609 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46903 * 299.99397 * 14 12 10 18 18 C 1.46846 * 111.19767 * 61.74317 * 8 7 6 19 19 C 1.53043 * 109.52316 * 298.25581 * 18 8 7 20 20 H 1.09003 * 109.47333 * 59.99677 * 1 2 3 21 21 H 1.08996 * 109.47059 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46680 * 299.99946 * 1 2 3 23 23 H 0.97000 * 120.00216 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.51869 * 59.87458 * 5 3 2 25 25 H 1.09007 * 109.50366 * 57.67950 * 6 5 3 26 26 H 1.09001 * 109.50045 * 297.56621 * 6 5 3 27 27 H 1.08997 * 109.46601 * 180.80276 * 7 6 5 28 28 H 1.09006 * 109.45698 * 60.82720 * 7 6 5 29 29 H 1.08998 * 109.47046 * 49.99675 * 9 8 7 30 30 H 1.09001 * 109.47014 * 289.99875 * 9 8 7 31 31 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.46465 * 58.27194 * 18 8 7 33 33 H 1.08998 * 109.46421 * 178.24606 * 18 8 7 34 34 H 1.08999 * 109.50530 * 299.24210 * 19 18 8 35 35 H 1.08996 * 109.50505 * 179.12322 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1673 -0.0006 6 6 4.1576 2.6104 0.0002 7 6 5.6868 2.6043 0.0594 8 7 6.1280 1.9090 1.2753 9 6 7.5850 2.0037 1.4366 10 6 7.9729 1.5001 2.8030 11 1 7.2127 1.1493 3.4851 12 6 9.2979 1.4930 3.1845 13 7 10.2237 1.9206 2.3540 14 14 9.7779 0.8758 4.8810 15 1 9.3536 -0.5393 5.0314 16 1 11.2509 0.9716 5.0440 17 1 9.1109 1.7054 5.9165 18 6 5.6886 0.5078 1.2747 19 6 4.1594 0.4513 1.2518 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.9501 -0.8400 -0.0004 24 1 4.0098 0.6519 -0.8894 25 1 3.7618 3.1364 0.8690 26 1 3.8307 3.1129 -0.9102 27 1 6.0538 3.6305 0.0745 28 1 6.0820 2.0901 -0.8167 29 1 7.8955 3.0432 1.3308 30 1 8.0751 1.3988 0.6738 31 1 11.1558 1.9152 2.6223 32 1 6.0839 0.0036 0.3930 33 1 6.0568 0.0113 2.1725 34 1 3.7636 0.9433 2.1402 35 1 3.8338 -0.5888 1.2356 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042228625.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:13 Heat of formation + Delta-G solvation = -71.662842 kcal Electronic energy + Delta-G solvation = -15879.157885 eV Core-core repulsion = 13296.366711 eV Total energy + Delta-G solvation = -2582.791173 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15733 -39.17465 -35.61944 -35.43488 -33.79028 -31.75737 -29.41021 -27.80647 -25.58600 -24.00044 -23.23794 -21.57870 -20.56377 -18.44052 -18.33794 -17.07779 -16.74491 -16.36798 -15.85402 -15.71421 -15.18435 -14.97575 -14.44429 -14.29320 -13.86650 -13.61852 -13.37078 -13.06076 -13.04792 -12.79545 -12.50684 -12.31003 -12.08246 -11.95075 -11.62294 -11.45314 -11.16070 -10.69931 -10.59039 -10.09644 -8.96755 -8.18677 -6.28991 1.42634 1.46164 1.53896 1.62406 2.31310 2.41966 3.13612 3.31289 3.66372 3.83992 3.92824 4.30014 4.31726 4.43360 4.52351 4.62163 4.65097 4.72487 4.80862 4.86124 4.97056 5.02103 5.14458 5.15968 5.21962 5.34007 5.40291 5.49919 5.67145 6.07693 6.39291 6.56308 6.68009 6.87595 7.27188 7.40905 8.92295 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.049769 B = 0.005613 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.465946 B = 4987.425389 C = 5337.603856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.723 5.723 3 C 0.520 3.480 4 O -0.584 6.584 5 C -0.101 4.101 6 C -0.084 4.084 7 C 0.056 3.944 8 N -0.550 5.550 9 C 0.207 3.793 10 C -0.523 4.523 11 H 0.064 0.936 12 C 0.002 3.998 13 N -0.936 5.936 14 Si 0.970 3.030 15 H -0.264 1.264 16 H -0.284 1.284 17 H -0.271 1.271 18 C 0.065 3.935 19 C -0.092 4.092 20 H 0.050 0.950 21 H 0.112 0.888 22 H 0.046 0.954 23 H 0.418 0.582 24 H 0.115 0.885 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.000 1.000 30 H -0.035 1.035 31 H 0.264 0.736 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.881 -7.986 -5.199 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.375 5.375 3 C 0.307 3.693 4 O -0.464 6.464 5 C -0.123 4.123 6 C -0.122 4.122 7 C -0.073 4.073 8 N -0.275 5.275 9 C 0.081 3.919 10 C -0.562 4.562 11 H 0.082 0.918 12 C -0.196 4.196 13 N -0.576 5.576 14 Si 0.794 3.206 15 H -0.189 1.189 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.063 4.063 19 C -0.130 4.130 20 H 0.069 0.931 21 H 0.130 0.870 22 H 0.065 0.935 23 H 0.255 0.745 24 H 0.133 0.867 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.018 0.982 30 H -0.017 1.017 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.380 -7.002 -4.822 18.455 hybrid contribution 1.354 -0.563 -0.005 1.467 sum -15.026 -7.565 -4.827 17.501 Atomic orbital electron populations 1.21674 0.78825 1.04227 1.01313 1.45775 1.08394 1.08610 1.74743 1.20821 0.90268 0.83672 0.74499 1.90666 1.71219 1.33144 1.51348 1.21367 0.90571 0.98750 1.01581 1.21270 0.93196 0.95398 1.02373 1.22071 0.95628 0.98685 0.90878 1.61953 1.14261 1.14765 1.36521 1.19359 0.82753 0.94480 0.95315 1.21440 0.92454 1.41872 1.00400 0.91784 1.25921 0.96420 0.95617 1.01667 1.70086 1.01262 1.48391 1.37881 0.85433 0.76841 0.79219 0.79099 1.18862 1.20942 1.19601 1.21958 0.95033 0.88782 1.00561 1.21540 0.94101 1.01196 0.96176 0.93124 0.86982 0.93481 0.74498 0.86725 0.92554 0.90658 0.92096 0.95316 0.98217 1.01717 0.92702 0.95575 0.91344 0.92243 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.70 127.77 1.37 2.55 16 2 N -0.72 -12.33 5.62 -484.51 -2.72 -15.06 16 3 C 0.52 13.41 7.16 87.66 0.63 14.04 16 4 O -0.58 -20.09 15.98 -3.03 -0.05 -20.14 16 5 C -0.10 -2.60 2.59 -11.46 -0.03 -2.62 16 6 C -0.08 -2.65 4.68 30.64 0.14 -2.51 16 7 C 0.06 2.06 5.46 86.32 0.47 2.53 16 8 N -0.55 -24.03 4.65 -900.92 -4.19 -28.21 16 9 C 0.21 11.19 4.72 85.56 0.40 11.59 16 10 C -0.52 -29.71 8.42 25.60 0.22 -29.49 16 11 H 0.06 3.54 7.13 -2.92 -0.02 3.52 16 12 C 0.00 0.10 5.46 84.66 0.46 0.56 16 13 N -0.94 -56.56 13.29 21.45 0.28 -56.28 16 14 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 15 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 C 0.06 2.35 5.30 86.33 0.46 2.80 16 19 C -0.09 -2.45 5.26 30.65 0.16 -2.29 16 20 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 21 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.42 4.41 8.32 -92.71 -0.77 3.64 16 24 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.06 2.01 8.04 -2.38 -0.02 1.99 16 26 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.06 2.34 8.02 -2.39 -0.02 2.32 16 28 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.00 -0.02 7.99 -2.39 -0.02 -0.04 16 30 H -0.03 -2.01 8.12 -2.39 -0.02 -2.03 16 31 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 2.73 6.70 -2.39 -0.02 2.72 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.10 1.89 7.66 -2.39 -0.02 1.88 16 Total: -1.00 -71.44 285.57 -0.08 -71.51 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 0.29 Total: 4.90 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 4.28 Total: -2.84 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -6.63 Total: -99.55 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.14 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -71.44 -0.08 -71.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042228625.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.151 kcal (2) G-P(sol) polarization free energy of solvation -71.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds