Wall clock time and date at job start Mon Mar 30 2020 03:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99956 * 2 1 4 4 H 1.48497 * 109.47116 * 269.99632 * 3 2 1 5 5 H 1.48502 * 109.47132 * 29.99776 * 3 2 1 6 6 H 1.48499 * 109.47204 * 149.99827 * 3 2 1 7 7 C 1.37876 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99658 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99842 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47102 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47556 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47347 * 180.02562 * 11 10 9 13 13 C 1.42894 * 113.99863 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47240 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46817 * 64.99822 * 14 13 12 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 C 1.53000 * 109.47233 * 184.99627 * 14 13 12 20 20 H 0.97005 * 120.00202 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47441 * 60.00015 * 9 7 2 22 22 H 1.08995 * 109.47089 * 299.99854 * 9 7 2 23 23 H 1.09010 * 109.47083 * 60.00056 * 10 9 7 24 24 H 1.08995 * 109.47347 * 300.00085 * 10 9 7 25 25 H 1.09001 * 109.46554 * 59.99900 * 11 10 9 26 26 H 1.09006 * 109.46505 * 300.00158 * 11 10 9 27 27 H 1.09008 * 109.47321 * 59.99557 * 13 12 11 28 28 H 1.08997 * 109.47221 * 299.99487 * 13 12 11 29 29 H 1.09002 * 109.47070 * 305.00002 * 14 13 12 30 30 H 1.08996 * 109.47853 * 300.00202 * 15 14 13 31 31 H 1.09002 * 109.47153 * 60.00231 * 15 14 13 32 32 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 33 33 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 34 34 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 35 35 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 36 36 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 38 38 H 1.08992 * 109.47399 * 300.00166 * 19 14 13 39 39 H 1.09004 * 109.46724 * 60.00652 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6366 0.0022 12 8 6.0278 -3.9838 0.0027 13 6 7.4523 -4.0967 0.0033 14 6 7.8468 -5.5749 0.0044 15 6 7.3897 -6.2257 -1.3026 16 6 7.7848 -7.7038 -1.3019 17 6 9.3048 -7.8254 -1.1758 18 6 9.7619 -7.1747 0.1312 19 6 9.3667 -5.6971 0.1307 20 1 -0.4851 0.8401 -0.0004 21 1 3.8745 -0.6800 0.8911 22 1 3.8751 -0.6804 -0.8888 23 1 3.6585 -3.1510 -0.8876 24 1 3.6578 -3.1498 0.8924 25 1 5.9148 -2.1220 0.8918 26 1 5.9148 -2.1234 -0.8883 27 1 7.8548 -3.6128 0.8933 28 1 7.8554 -3.6134 -0.8867 29 1 7.3707 -6.0774 0.8464 30 1 6.3070 -6.1387 -1.3927 31 1 7.8659 -5.7232 -2.1446 32 1 7.4595 -8.1673 -2.2333 33 1 7.3090 -8.2066 -0.4599 34 1 9.7806 -7.3227 -2.0178 35 1 9.5861 -8.8785 -1.1748 36 1 10.8446 -7.2617 0.2212 37 1 9.2860 -7.6774 0.9732 38 1 9.8428 -5.1946 -0.7113 39 1 9.6923 -5.2335 1.0619 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052154140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:26 Heat of formation + Delta-G solvation = -96.188482 kcal Electronic energy + Delta-G solvation = -15451.339710 eV Core-core repulsion = 12971.025369 eV Total energy + Delta-G solvation = -2480.314341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06319 -37.26326 -33.98917 -32.19186 -31.27422 -30.85524 -27.29122 -25.32932 -22.87517 -22.44977 -21.38764 -20.11199 -19.77662 -16.78799 -16.08824 -15.88832 -15.59064 -14.52925 -14.37215 -14.26605 -14.06352 -13.54841 -13.08757 -12.67383 -12.43107 -12.30019 -11.95225 -11.78300 -11.51398 -11.27798 -11.13633 -10.84124 -10.70628 -10.50953 -10.28699 -10.15703 -9.96640 -9.80239 -9.63950 -9.23431 -9.17708 -8.52825 -6.02917 -4.01035 3.31267 3.38423 3.41952 3.89906 4.46013 4.52308 4.60964 4.69068 4.98107 5.12447 5.25241 5.30585 5.32423 5.34327 5.37493 5.47783 5.54572 5.59428 5.66828 5.73618 5.82284 5.86467 5.97106 6.01784 6.03360 6.08037 6.14430 6.31738 6.36395 6.55635 6.55908 6.90162 7.29602 7.42941 7.56237 7.81038 8.56051 9.02564 9.59080 11.10595 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.064389 B = 0.003915 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.752358 B = 7151.082670 C = 7422.307528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.061 3.939 12 O -0.388 6.388 13 C 0.065 3.935 14 C -0.085 4.085 15 C -0.112 4.112 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.113 4.113 20 H 0.263 0.737 21 H 0.016 0.984 22 H 0.012 0.988 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.549 -12.320 -1.040 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.049 4.049 10 C -0.138 4.138 11 C -0.015 4.015 12 O -0.307 6.307 13 C -0.012 4.012 14 C -0.103 4.103 15 C -0.149 4.149 16 C -0.158 4.158 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.151 4.151 20 H 0.073 0.927 21 H 0.034 0.966 22 H 0.030 0.970 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.265 -12.356 -1.038 23.758 hybrid contribution 0.527 1.243 -0.009 1.350 sum 20.793 -11.113 -1.047 23.599 Atomic orbital electron populations 1.69917 1.06288 1.26871 1.51196 1.25036 0.94755 0.99170 0.94602 0.86763 0.80337 0.83600 0.78494 1.20278 1.21348 1.19057 1.21119 0.89322 0.94591 1.50712 0.90892 1.19520 0.97348 0.91721 0.96280 1.21449 0.90022 0.99998 1.02293 1.22771 0.97282 0.82223 0.99255 1.87884 1.19791 1.27714 1.95335 1.22476 0.82739 0.96380 0.99620 1.21134 0.95254 0.94606 0.99336 1.21529 1.01982 0.94763 0.96661 1.21553 0.95554 0.96969 1.01716 1.21554 0.96322 1.00156 0.97743 1.21495 1.00358 0.95607 0.98037 1.21510 0.95012 0.96698 1.01858 0.92728 0.96566 0.96990 0.92037 0.92008 0.94000 0.94006 0.93861 0.93839 0.90426 0.90821 0.92341 0.92125 0.92007 0.92138 0.92319 0.92134 0.91943 0.91915 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.01 -0.28 4.04 -27.89 -0.11 -0.39 16 10 C -0.10 -2.11 5.52 -26.73 -0.15 -2.26 16 11 C 0.06 1.07 5.94 37.16 0.22 1.29 16 12 O -0.39 -6.49 9.88 -35.23 -0.35 -6.83 16 13 C 0.06 0.84 5.32 37.16 0.20 1.04 16 14 C -0.08 -0.93 2.43 -90.62 -0.22 -1.15 16 15 C -0.11 -1.23 5.10 -26.73 -0.14 -1.36 16 16 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 17 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 18 C -0.12 -0.93 5.92 -26.76 -0.16 -1.09 16 19 C -0.11 -1.00 5.20 -26.76 -0.14 -1.14 16 20 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 21 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 22 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 23 H 0.06 1.32 8.14 -51.92 -0.42 0.89 16 24 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.95 7.82 -51.93 -0.41 0.54 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 307.67 15.07 4.64 4.64 Total: -1.00 -30.73 307.67 -8.37 -39.10 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -7.52 Total: -5.52 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -1.24 Total: -21.14 kcal Atomic # 7 Polarization: -28.31 SS G_CDS: 0.77 Total: -27.54 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.35 Total: -6.83 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.73 -8.37 -39.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052154140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.087 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds