Wall clock time and date at job start Mon Mar 30 2020 03:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99956 * 2 1 4 4 H 1.48497 * 109.47116 * 269.99632 * 3 2 1 5 5 H 1.48502 * 109.47132 * 29.99776 * 3 2 1 6 6 H 1.48499 * 109.47204 * 149.99827 * 3 2 1 7 7 C 1.37876 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99658 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99842 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47102 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47556 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47347 * 180.02562 * 11 10 9 13 13 C 1.42894 * 113.99863 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47240 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46817 * 64.99822 * 14 13 12 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 C 1.53000 * 109.47233 * 184.99627 * 14 13 12 20 20 H 0.97005 * 120.00202 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47441 * 60.00015 * 9 7 2 22 22 H 1.08995 * 109.47089 * 299.99854 * 9 7 2 23 23 H 1.09010 * 109.47083 * 60.00056 * 10 9 7 24 24 H 1.08995 * 109.47347 * 300.00085 * 10 9 7 25 25 H 1.09001 * 109.46554 * 59.99900 * 11 10 9 26 26 H 1.09006 * 109.46505 * 300.00158 * 11 10 9 27 27 H 1.09008 * 109.47321 * 59.99557 * 13 12 11 28 28 H 1.08997 * 109.47221 * 299.99487 * 13 12 11 29 29 H 1.09002 * 109.47070 * 305.00002 * 14 13 12 30 30 H 1.08996 * 109.47853 * 300.00202 * 15 14 13 31 31 H 1.09002 * 109.47153 * 60.00231 * 15 14 13 32 32 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 33 33 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 34 34 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 35 35 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 36 36 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 38 38 H 1.08992 * 109.47399 * 300.00166 * 19 14 13 39 39 H 1.09004 * 109.46724 * 60.00652 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6366 0.0022 12 8 6.0278 -3.9838 0.0027 13 6 7.4523 -4.0967 0.0033 14 6 7.8468 -5.5749 0.0044 15 6 7.3897 -6.2257 -1.3026 16 6 7.7848 -7.7038 -1.3019 17 6 9.3048 -7.8254 -1.1758 18 6 9.7619 -7.1747 0.1312 19 6 9.3667 -5.6971 0.1307 20 1 -0.4851 0.8401 -0.0004 21 1 3.8745 -0.6800 0.8911 22 1 3.8751 -0.6804 -0.8888 23 1 3.6585 -3.1510 -0.8876 24 1 3.6578 -3.1498 0.8924 25 1 5.9148 -2.1220 0.8918 26 1 5.9148 -2.1234 -0.8883 27 1 7.8548 -3.6128 0.8933 28 1 7.8554 -3.6134 -0.8867 29 1 7.3707 -6.0774 0.8464 30 1 6.3070 -6.1387 -1.3927 31 1 7.8659 -5.7232 -2.1446 32 1 7.4595 -8.1673 -2.2333 33 1 7.3090 -8.2066 -0.4599 34 1 9.7806 -7.3227 -2.0178 35 1 9.5861 -8.8785 -1.1748 36 1 10.8446 -7.2617 0.2212 37 1 9.2860 -7.6774 0.9732 38 1 9.8428 -5.1946 -0.7113 39 1 9.6923 -5.2335 1.0619 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052154140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:26 Heat of formation + Delta-G solvation = -113.419047 kcal Electronic energy + Delta-G solvation = -15452.086884 eV Core-core repulsion = 12971.025369 eV Total energy + Delta-G solvation = -2481.061515 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96528 -38.41023 -35.87709 -33.90534 -32.52528 -31.59710 -29.06951 -26.39378 -24.45084 -23.39085 -22.34175 -21.74821 -20.60432 -18.96076 -17.37019 -17.13548 -16.44049 -16.23372 -15.66604 -15.23177 -14.94951 -14.79873 -14.72743 -14.25839 -13.62581 -13.39034 -13.09644 -13.01683 -12.82362 -12.55268 -12.23692 -11.99512 -11.86101 -11.83126 -11.71131 -11.58243 -11.33720 -11.31187 -10.94906 -10.90311 -10.77765 -10.47280 -8.30471 -6.36006 1.36453 1.38984 1.51139 2.36291 2.73696 3.04401 3.74641 3.85797 3.90997 4.14561 4.22041 4.23937 4.38793 4.45550 4.51621 4.55280 4.56436 4.65324 4.70454 4.73153 4.81706 4.83373 4.87076 5.02313 5.05810 5.19109 5.26279 5.28257 5.31535 5.41126 5.43841 5.50683 5.53846 5.59824 5.62830 6.25096 6.36261 6.72143 7.28487 8.86676 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.064389 B = 0.003915 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.752358 B = 7151.082670 C = 7422.307528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.243 1.243 7 C -0.538 4.538 8 H 0.027 0.973 9 C -0.007 4.007 10 C -0.095 4.095 11 C 0.071 3.929 12 O -0.408 6.408 13 C 0.058 3.942 14 C -0.083 4.083 15 C -0.112 4.112 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.109 4.109 20 H 0.267 0.733 21 H 0.026 0.974 22 H 0.025 0.975 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.661 -11.522 -1.073 26.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.779 3.221 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.576 4.576 8 H 0.046 0.954 9 C -0.044 4.044 10 C -0.133 4.133 11 C -0.005 4.005 12 O -0.328 6.328 13 C -0.018 4.018 14 C -0.101 4.101 15 C -0.149 4.149 16 C -0.157 4.157 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.146 4.146 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 23.397 -11.583 -1.071 26.130 hybrid contribution -0.516 0.879 -0.004 1.019 sum 22.881 -10.704 -1.075 25.284 Atomic orbital electron populations 1.70081 1.08462 1.28332 1.52459 1.26107 0.95719 1.03851 0.93875 0.85562 0.79525 0.77595 0.79385 1.18906 1.20853 1.16604 1.21475 0.92136 0.93165 1.50857 0.95413 1.19436 0.93946 0.93987 0.97053 1.21272 0.93176 0.97755 1.01100 1.22511 0.94341 0.83097 1.00572 1.87854 1.22366 1.27068 1.95536 1.22741 0.80564 0.97846 1.00632 1.21146 0.96958 0.93287 0.98741 1.21504 1.00287 0.96209 0.96930 1.21544 0.96831 0.95585 1.01750 1.21548 0.94959 1.01026 0.98012 1.21509 1.01321 0.94781 0.97825 1.21493 0.92934 0.97632 1.02560 0.92379 0.95571 0.95679 0.93319 0.93319 0.92636 0.92618 0.92690 0.92815 0.91603 0.93494 0.91982 0.91770 0.92484 0.91724 0.91183 0.90546 0.92194 0.91248 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 2 C 0.00 0.06 5.47 84.65 0.46 0.52 16 3 Si 0.96 44.46 27.47 68.60 1.88 46.35 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 7 C -0.54 -32.24 9.66 25.60 0.25 -31.99 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.81 16 9 C -0.01 -0.33 4.04 29.85 0.12 -0.21 16 10 C -0.10 -4.02 5.52 30.60 0.17 -3.85 16 11 C 0.07 2.37 5.94 71.98 0.43 2.80 16 12 O -0.41 -13.26 9.88 -148.98 -1.47 -14.73 16 13 C 0.06 1.40 5.32 71.98 0.38 1.78 16 14 C -0.08 -1.72 2.43 -10.79 -0.03 -1.74 16 15 C -0.11 -2.38 5.10 30.59 0.16 -2.23 16 16 C -0.12 -2.08 5.92 30.60 0.18 -1.90 16 17 C -0.12 -1.62 5.92 30.60 0.18 -1.44 16 18 C -0.12 -1.55 5.92 30.58 0.18 -1.37 16 19 C -0.11 -1.65 5.20 30.58 0.16 -1.49 16 20 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 21 H 0.03 1.20 7.20 -2.38 -0.02 1.19 16 22 H 0.02 1.14 7.57 -2.39 -0.02 1.12 16 23 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 24 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.23 7.82 -2.39 -0.02 1.21 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -67.05 307.67 4.26 -62.79 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.91 Total: 7.51 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 2.64 Total: -41.11 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.30 Total: -60.79 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.47 Total: -14.73 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.35 kcal Total: -67.05 4.26 -62.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052154140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.633 kcal (2) G-P(sol) polarization free energy of solvation -67.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds