Wall clock time and date at job start Mon Mar 30 2020 02:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46900 * 111.00120 * 2 1 4 4 C 1.50703 * 109.47234 * 66.03866 * 3 2 1 5 5 H 1.08004 * 119.99863 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00008 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99983 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 120.00239 * 0.02562 * 6 4 3 9 9 H 1.48501 * 109.47132 * 89.99315 * 8 6 4 10 10 H 1.48494 * 109.47163 * 210.00050 * 8 6 4 11 11 H 1.48502 * 109.46930 * 329.99963 * 8 6 4 12 12 C 1.46898 * 111.00513 * 236.04394 * 2 1 3 13 13 C 1.53006 * 109.47006 * 293.95181 * 12 2 1 14 14 C 1.50698 * 109.47184 * 179.97438 * 13 12 2 15 15 O 1.21282 * 120.00025 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00035 * 179.97438 * 14 13 12 17 17 C 1.46496 * 119.99846 * 180.02562 * 16 14 13 18 18 C 1.53003 * 117.49700 * 223.62259 * 17 16 14 19 19 C 1.52999 * 60.00284 * 252.51102 * 18 17 16 20 20 H 1.09008 * 109.47294 * 183.95307 * 1 2 3 21 21 H 1.08994 * 109.47718 * 303.95889 * 1 2 3 22 22 H 1.09007 * 109.47181 * 63.96365 * 1 2 3 23 23 H 1.08997 * 109.47821 * 186.04187 * 3 2 1 24 24 H 1.09003 * 109.46887 * 306.04174 * 3 2 1 25 25 H 0.97000 * 119.99944 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.47062 * 173.95435 * 12 2 1 27 27 H 1.08993 * 109.47084 * 53.94882 * 12 2 1 28 28 H 1.09001 * 109.46801 * 300.00064 * 13 12 2 29 29 H 1.09001 * 109.46998 * 59.99660 * 13 12 2 30 30 H 0.96998 * 119.99962 * 0.02562 * 16 14 13 31 31 H 1.08997 * 115.55382 * 9.33363 * 17 16 14 32 32 H 1.08994 * 117.49898 * 0.02562 * 18 17 16 33 33 H 1.09003 * 117.49491 * 145.02442 * 18 17 16 34 34 H 1.08997 * 117.50444 * 252.51321 * 19 18 17 35 35 H 1.08998 * 117.52052 * 107.47472 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6367 2.0472 1.2984 5 1 1.0743 1.5113 2.0487 6 6 2.0266 3.3496 1.5284 7 7 1.7132 3.9395 2.6612 8 14 2.9987 4.2767 0.2304 9 1 2.0613 4.9802 -0.6816 10 1 3.8853 5.2684 0.8903 11 1 3.8223 3.3183 -0.5497 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2427 -0.9702 14 6 2.1712 -3.0284 -2.1374 15 8 2.7867 -2.4631 -3.0163 16 7 1.9707 -4.3595 -2.2041 17 6 2.4958 -5.1234 -3.3385 18 6 1.5780 -6.1727 -3.9690 19 6 2.7726 -6.6123 -3.1201 20 1 -0.3634 -1.0253 0.0709 21 1 -0.3634 0.5740 0.8523 22 1 -0.3634 0.4511 -0.9234 23 1 3.0796 1.3445 -0.1082 24 1 1.5611 1.9273 -0.8310 25 1 1.9871 4.8558 2.8229 26 1 3.0798 -0.6610 -1.1754 27 1 1.5611 -0.3874 -2.0627 28 1 2.0659 -2.6213 -0.0449 29 1 0.5473 -2.3476 -0.9321 30 1 1.4788 -4.8117 -1.5009 31 1 3.1678 -4.5786 -4.0014 32 1 0.5834 -6.2944 -3.5400 33 1 1.6460 -6.3182 -5.0471 34 1 3.6265 -7.0470 -3.6396 35 1 2.5644 -7.0232 -2.1322 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054049917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:34 Heat of formation + Delta-G solvation = -8.935696 kcal Electronic energy + Delta-G solvation = -15223.618427 eV Core-core repulsion = 12643.547307 eV Total energy + Delta-G solvation = -2580.071120 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89076 -37.47634 -36.56627 -33.06342 -32.58271 -30.71952 -27.63775 -25.79296 -23.17118 -22.72657 -21.55829 -20.54941 -19.87121 -17.25765 -16.76233 -16.62093 -15.62717 -14.86388 -14.70019 -14.31784 -14.15173 -13.47873 -13.08152 -12.87145 -12.81974 -12.23281 -11.93708 -11.63232 -11.58129 -11.37318 -11.02494 -10.84585 -10.72221 -10.57723 -10.13445 -9.89163 -9.73587 -9.26081 -8.94845 -8.55224 -7.39130 -6.03191 -4.00379 2.56627 2.93357 3.31835 3.39291 3.43490 3.62107 4.45269 4.46241 4.61187 4.64859 4.67175 5.03708 5.25022 5.27554 5.30133 5.40847 5.50793 5.66914 5.72268 5.82463 6.03416 6.13907 6.29056 6.33070 6.42049 6.69973 6.89752 7.02074 7.34751 7.62174 7.89739 8.05267 8.18436 8.67447 9.04593 9.58912 11.09843 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.060641 B = 0.004506 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.625149 B = 6212.546262 C = 6472.501866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.533 5.533 3 C 0.162 3.838 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.068 3.932 13 C -0.135 4.135 14 C 0.520 3.480 15 O -0.537 6.537 16 N -0.709 5.709 17 C 0.081 3.919 18 C -0.196 4.196 19 C -0.191 4.191 20 H 0.048 0.952 21 H 0.081 0.919 22 H 0.012 0.988 23 H 0.030 0.970 24 H -0.015 1.015 25 H 0.263 0.737 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.402 0.598 31 H 0.137 0.863 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 -19.344 -10.375 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.257 5.257 3 C 0.035 3.965 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.541 5.541 8 Si 0.702 3.298 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.191 1.191 12 C -0.061 4.061 13 C -0.175 4.175 14 C 0.307 3.693 15 O -0.413 6.413 16 N -0.360 5.360 17 C -0.025 4.025 18 C -0.235 4.235 19 C -0.229 4.229 20 H 0.066 0.934 21 H 0.099 0.901 22 H 0.030 0.970 23 H 0.048 0.952 24 H 0.003 0.997 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.236 0.764 31 H 0.154 0.846 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.342 -18.934 -10.465 21.637 hybrid contribution -0.060 0.636 -1.013 1.198 sum -0.402 -18.299 -11.479 21.605 Atomic orbital electron populations 1.22314 0.88509 0.99805 1.00995 1.61943 1.07298 1.16644 1.39820 1.20195 0.95357 0.83877 0.97031 1.21040 1.35561 0.97205 1.00911 0.90094 1.24892 0.95749 0.97364 0.95341 1.69893 1.46969 1.13231 1.23958 0.86866 0.80694 0.80086 0.82168 1.20337 1.21132 1.19072 1.21790 1.00883 0.90718 0.92732 1.21686 1.02528 0.96703 0.96594 1.20985 0.78937 0.81542 0.87812 1.90694 1.40576 1.69526 1.40530 1.45478 1.57940 1.08023 1.24561 1.21582 1.00883 0.87890 0.92165 1.23421 0.95838 1.04202 0.99998 1.23370 1.00424 0.97283 1.01871 0.93374 0.90059 0.96968 0.95248 0.99732 0.92678 0.90647 0.95075 0.87874 0.88875 0.76363 0.84572 0.88517 0.88104 0.87963 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 9.14 60.06 0.55 1.16 16 2 N -0.53 -11.28 4.75 -244.37 -1.16 -12.44 16 3 C 0.16 4.04 3.79 -4.97 -0.02 4.03 16 4 C -0.51 -14.63 9.01 -34.44 -0.31 -14.94 16 5 H 0.08 2.50 7.37 -52.48 -0.39 2.11 16 6 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 8 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 12 C 0.07 1.23 4.25 -3.82 -0.02 1.21 16 13 C -0.13 -1.82 5.62 -27.88 -0.16 -1.98 16 14 C 0.52 7.14 7.83 -10.99 -0.09 7.05 16 15 O -0.54 -9.55 15.55 5.56 0.09 -9.46 16 16 N -0.71 -7.14 5.57 -53.81 -0.30 -7.44 16 17 C 0.08 0.77 6.43 -67.93 -0.44 0.33 16 18 C -0.20 -1.41 10.46 -26.73 -0.28 -1.69 16 19 C -0.19 -1.31 10.46 -26.73 -0.28 -1.59 16 20 H 0.05 0.73 6.47 -51.92 -0.34 0.40 16 21 H 0.08 1.71 6.76 -51.93 -0.35 1.36 16 22 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 23 H 0.03 0.75 6.99 -51.93 -0.36 0.39 16 24 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.08 1.45 7.89 -51.93 -0.41 1.04 16 27 H 0.03 0.59 8.08 -51.93 -0.42 0.17 16 28 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.09 1.09 6.55 -51.93 -0.34 0.75 16 30 H 0.40 2.89 8.83 -40.82 -0.36 2.53 16 31 H 0.14 1.51 7.40 -51.93 -0.38 1.13 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 291.55 15.07 4.39 4.39 Total: -1.00 -33.19 291.55 -7.46 -40.64 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.45 Total: -1.44 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -1.13 Total: -4.51 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.69 Total: -46.92 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.19 -7.46 -40.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054049917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.705 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds