Wall clock time and date at job start Mon Mar 30 2020 03:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08994 * 109.47386 * 54.99838 * 3 2 1 5 5 C 1.53000 * 109.46803 * 295.00040 * 3 2 1 6 6 C 1.53004 * 109.47115 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46724 * 60.00221 * 6 5 3 8 8 C 1.53000 * 109.47144 * 299.99761 * 7 6 5 9 9 H 1.09001 * 109.47166 * 180.02562 * 8 7 6 10 10 O 1.42901 * 109.47074 * 300.00295 * 8 7 6 11 11 C 1.42902 * 114.00184 * 269.99962 * 10 8 7 12 12 C 1.52992 * 109.47288 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47257 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47021 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47081 * 119.99727 * 17 15 13 20 20 H 1.48501 * 109.47213 * 240.00099 * 17 15 13 21 21 C 1.52991 * 109.46893 * 60.00604 * 8 7 6 22 22 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99659 * 1 2 3 24 24 H 1.08992 * 109.47569 * 60.00116 * 1 2 3 25 25 H 1.08999 * 109.47230 * 239.99848 * 2 1 3 26 26 H 1.09001 * 109.47619 * 120.00020 * 2 1 3 27 27 H 1.09005 * 109.47502 * 299.99551 * 5 3 2 28 28 H 1.09001 * 109.47166 * 60.00147 * 5 3 2 29 29 H 1.08997 * 109.47210 * 179.97438 * 6 5 3 30 30 H 1.08994 * 109.47053 * 300.00429 * 6 5 3 31 31 H 1.09012 * 109.46571 * 180.02562 * 7 6 5 32 32 H 1.08995 * 109.47640 * 60.00561 * 7 6 5 33 33 H 1.09004 * 109.47001 * 59.99769 * 11 10 8 34 34 H 1.09005 * 109.47138 * 300.00166 * 11 10 8 35 35 H 1.09004 * 109.47330 * 59.99919 * 12 11 10 36 36 H 1.08997 * 109.47279 * 300.00405 * 12 11 10 37 37 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.47534 * 60.00056 * 21 8 7 39 39 H 1.09006 * 109.47078 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 2.1446 3.5692 -1.3072 7 6 3.6695 3.5715 -1.1812 8 6 4.0743 2.8875 0.1261 9 1 5.1605 2.8895 0.2161 10 8 3.5040 3.5939 1.2297 11 6 4.3350 4.6363 1.7445 12 6 3.6283 5.3199 2.9167 13 6 4.5049 6.4188 3.4600 14 1 5.4698 6.6101 3.0141 15 6 4.0755 7.1793 4.5270 16 7 2.8987 6.9492 5.0671 17 14 5.1618 8.5418 5.2000 18 1 6.4234 8.6004 4.4188 19 1 4.4508 9.8410 5.0911 20 1 5.4750 8.2667 6.6253 21 6 3.5648 1.4449 0.1259 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0698 1.5875 -2.1492 28 1 0.5488 2.1252 -1.3969 29 1 1.8567 4.0563 -2.2387 30 1 1.7097 4.1079 -0.4654 31 1 4.0324 4.5994 -1.1806 32 1 4.1044 3.0328 -2.0230 33 1 4.5285 5.3677 0.9598 34 1 5.2791 4.2126 2.0871 35 1 3.4352 4.5883 3.7013 36 1 2.6841 5.7435 2.5746 37 1 2.5968 7.4840 5.8180 38 1 3.9998 0.9061 -0.7158 39 1 3.8528 0.9577 1.0575 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070564464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:36 Heat of formation + Delta-G solvation = -94.747267 kcal Electronic energy + Delta-G solvation = -16124.051146 eV Core-core repulsion = 13643.799301 eV Total energy + Delta-G solvation = -2480.251846 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.20287 -36.35117 -33.53154 -32.86792 -30.53698 -29.34960 -28.48096 -24.59710 -23.63193 -22.26644 -20.81091 -20.48696 -19.30392 -16.45753 -15.71165 -15.17234 -14.99689 -14.62071 -14.51925 -13.98726 -13.56021 -13.16478 -12.63320 -12.51813 -12.42598 -11.93937 -11.78566 -11.56068 -11.25200 -11.08480 -10.95512 -10.82955 -10.69084 -10.52756 -10.37211 -10.21115 -9.83387 -9.64851 -9.41628 -9.15207 -8.72923 -8.33298 -6.01634 -4.04867 3.30761 3.37761 3.41810 4.32007 4.55114 4.80686 4.84980 5.02022 5.22822 5.30416 5.34541 5.35512 5.49692 5.60757 5.62228 5.73424 5.81091 5.83085 5.93643 5.98827 6.05630 6.10057 6.14656 6.23669 6.30039 6.31471 6.45867 6.52006 6.52700 6.58108 6.75740 6.95513 7.60693 7.82843 7.88468 8.18163 8.39620 9.02193 9.58790 11.10107 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040439 B = 0.005229 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.232032 B = 5353.305779 C = 5626.956049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.085 4.085 4 H 0.083 0.917 5 C -0.110 4.110 6 C -0.115 4.115 7 C -0.139 4.139 8 C 0.087 3.913 9 H 0.051 0.949 10 O -0.379 6.379 11 C 0.069 3.931 12 C 0.026 3.974 13 C -0.522 4.522 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.891 5.891 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.107 4.107 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.032 0.968 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 -11.568 -12.521 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.104 4.104 4 H 0.102 0.898 5 C -0.147 4.147 6 C -0.152 4.152 7 C -0.177 4.177 8 C 0.028 3.972 9 H 0.069 0.931 10 O -0.299 6.299 11 C -0.007 4.007 12 C -0.011 4.011 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.143 4.143 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.145 4.145 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.605 -11.545 -12.305 16.949 hybrid contribution 0.872 0.894 0.314 1.288 sum -0.733 -10.652 -11.991 16.055 Atomic orbital electron populations 1.21815 0.96148 1.01009 1.02084 1.21574 0.95780 0.96881 1.01408 1.21108 0.95233 0.95208 0.98812 0.89838 1.21591 1.00223 0.95870 0.97058 1.21412 0.95450 0.96698 1.01671 1.21997 0.97035 1.01026 0.97608 1.21938 0.96197 0.91840 0.87219 0.93070 1.87961 1.45210 1.49346 1.47355 1.22873 0.93364 0.87620 0.96846 1.19050 0.96237 0.94676 0.91146 1.21113 1.03287 1.16301 1.15379 0.92580 1.24995 0.95159 0.97520 0.96621 1.69996 1.18773 1.40294 1.23969 0.86490 0.80585 0.81817 0.78829 1.19715 1.20920 1.20924 1.21646 0.96086 0.95120 1.01637 0.93318 0.92553 0.92639 0.92576 0.92191 0.92821 0.92174 0.92859 0.90733 0.91952 0.92076 0.94958 0.94984 0.95870 0.95841 0.92944 0.91655 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 37.15 0.36 -1.20 16 2 C -0.12 -1.30 5.40 -26.73 -0.14 -1.44 16 3 C -0.09 -1.11 2.04 -90.62 -0.19 -1.29 16 4 H 0.08 1.32 7.68 -51.93 -0.40 0.92 16 5 C -0.11 -1.33 4.96 -26.73 -0.13 -1.46 16 6 C -0.11 -1.58 5.78 -26.73 -0.15 -1.73 16 7 C -0.14 -1.95 5.63 -26.73 -0.15 -2.10 16 8 C 0.09 1.35 2.92 -26.74 -0.08 1.28 16 9 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 10 O -0.38 -7.63 8.64 -35.23 -0.30 -7.94 16 11 C 0.07 1.53 5.69 37.15 0.21 1.74 16 12 C 0.03 0.71 5.34 -27.89 -0.15 0.56 16 13 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 17 Si 0.90 21.78 29.54 -169.99 -5.02 16.75 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.11 -1.43 4.95 -26.73 -0.13 -1.56 16 22 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.22 7.68 -51.93 -0.40 0.82 16 31 H 0.06 0.93 7.87 -51.92 -0.41 0.52 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.70 7.87 -51.93 -0.41 0.29 16 34 H 0.03 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 305.44 15.07 4.60 4.60 Total: -1.00 -30.10 305.44 -8.27 -38.36 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -7.31 Total: -4.29 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -0.97 Total: -21.01 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.30 Total: -7.94 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.10 -8.27 -38.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070564464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.385 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds