Wall clock time and date at job start Mon Mar 30 2020 03:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08994 * 109.47386 * 54.99838 * 3 2 1 5 5 C 1.53000 * 109.46803 * 295.00040 * 3 2 1 6 6 C 1.53004 * 109.47115 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46724 * 60.00221 * 6 5 3 8 8 C 1.53000 * 109.47144 * 299.99761 * 7 6 5 9 9 H 1.09001 * 109.47166 * 180.02562 * 8 7 6 10 10 O 1.42901 * 109.47074 * 300.00295 * 8 7 6 11 11 C 1.42902 * 114.00184 * 269.99962 * 10 8 7 12 12 C 1.52992 * 109.47288 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47257 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99988 * 359.97438 * 13 12 11 15 15 C 1.37885 * 120.00047 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99792 * 359.72305 * 15 13 12 17 17 Si 1.86795 * 120.00009 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47021 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47081 * 119.99727 * 17 15 13 20 20 H 1.48501 * 109.47213 * 240.00099 * 17 15 13 21 21 C 1.52991 * 109.46893 * 60.00604 * 8 7 6 22 22 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99659 * 1 2 3 24 24 H 1.08992 * 109.47569 * 60.00116 * 1 2 3 25 25 H 1.08999 * 109.47230 * 239.99848 * 2 1 3 26 26 H 1.09001 * 109.47619 * 120.00020 * 2 1 3 27 27 H 1.09005 * 109.47502 * 299.99551 * 5 3 2 28 28 H 1.09001 * 109.47166 * 60.00147 * 5 3 2 29 29 H 1.08997 * 109.47210 * 179.97438 * 6 5 3 30 30 H 1.08994 * 109.47053 * 300.00429 * 6 5 3 31 31 H 1.09012 * 109.46571 * 180.02562 * 7 6 5 32 32 H 1.08995 * 109.47640 * 60.00561 * 7 6 5 33 33 H 1.09004 * 109.47001 * 59.99769 * 11 10 8 34 34 H 1.09005 * 109.47138 * 300.00166 * 11 10 8 35 35 H 1.09004 * 109.47330 * 59.99919 * 12 11 10 36 36 H 1.08997 * 109.47279 * 300.00405 * 12 11 10 37 37 H 0.97000 * 119.99468 * 179.97438 * 16 15 13 38 38 H 1.08994 * 109.47534 * 60.00056 * 21 8 7 39 39 H 1.09006 * 109.47078 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 2.1446 3.5692 -1.3072 7 6 3.6695 3.5715 -1.1812 8 6 4.0743 2.8875 0.1261 9 1 5.1605 2.8895 0.2161 10 8 3.5040 3.5939 1.2297 11 6 4.3350 4.6363 1.7445 12 6 3.6283 5.3199 2.9167 13 6 4.5049 6.4188 3.4600 14 1 5.4698 6.6101 3.0141 15 6 4.0755 7.1793 4.5270 16 7 2.8987 6.9492 5.0671 17 14 5.1618 8.5418 5.2000 18 1 6.4234 8.6004 4.4188 19 1 4.4508 9.8410 5.0911 20 1 5.4750 8.2667 6.6253 21 6 3.5648 1.4449 0.1259 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0698 1.5875 -2.1492 28 1 0.5488 2.1252 -1.3969 29 1 1.8567 4.0563 -2.2387 30 1 1.7097 4.1079 -0.4654 31 1 4.0324 4.5994 -1.1806 32 1 4.1044 3.0328 -2.0230 33 1 4.5285 5.3677 0.9598 34 1 5.2791 4.2126 2.0871 35 1 3.4352 4.5883 3.7013 36 1 2.6841 5.7435 2.5746 37 1 2.5968 7.4840 5.8180 38 1 3.9998 0.9061 -0.7158 39 1 3.8528 0.9577 1.0575 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070564464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:35 Heat of formation + Delta-G solvation = -111.125449 kcal Electronic energy + Delta-G solvation = -16124.761358 eV Core-core repulsion = 13643.799301 eV Total energy + Delta-G solvation = -2480.962057 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.42442 -37.76012 -35.39635 -34.24091 -32.16649 -30.85560 -29.57822 -26.65625 -24.64324 -23.41165 -22.79912 -21.53809 -20.48062 -18.58994 -17.05312 -16.70394 -16.56592 -16.26512 -15.71062 -15.26534 -14.78341 -14.37978 -14.28990 -13.87653 -13.66209 -13.25397 -13.14901 -13.08635 -12.74460 -12.49413 -12.35372 -12.23314 -12.20190 -11.91361 -11.67273 -11.48939 -11.37971 -11.22113 -11.02284 -10.73889 -10.62997 -10.18835 -8.25132 -6.38523 1.39643 1.40993 1.54545 2.36904 2.99684 3.08661 3.77881 3.81871 3.93355 4.21475 4.27338 4.32676 4.41906 4.47339 4.48338 4.59733 4.62374 4.71809 4.81357 4.83720 4.88201 4.99497 5.02115 5.07422 5.15126 5.20445 5.30194 5.36331 5.38115 5.41025 5.48218 5.56536 5.57845 5.69202 5.75037 6.11823 6.55269 6.77965 7.31556 8.88309 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.040439 B = 0.005229 C = 0.004975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.232032 B = 5353.305779 C = 5626.956049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.086 4.086 4 H 0.042 0.958 5 C -0.104 4.104 6 C -0.116 4.116 7 C -0.136 4.136 8 C 0.073 3.927 9 H 0.059 0.941 10 O -0.399 6.399 11 C 0.087 3.913 12 C 0.031 3.969 13 C -0.546 4.546 14 H 0.066 0.934 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.975 3.025 18 H -0.258 1.258 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.104 4.104 22 H 0.063 0.937 23 H 0.038 0.962 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.039 0.961 34 H 0.040 0.960 35 H -0.009 1.009 36 H -0.009 1.009 37 H 0.266 0.734 38 H 0.098 0.902 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 -12.151 -14.186 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.104 4.104 4 H 0.060 0.940 5 C -0.142 4.142 6 C -0.154 4.154 7 C -0.173 4.173 8 C 0.016 3.984 9 H 0.077 0.923 10 O -0.319 6.319 11 C 0.011 3.989 12 C -0.007 4.007 13 C -0.584 4.584 14 H 0.085 0.915 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.799 3.201 18 H -0.182 1.182 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.142 4.142 22 H 0.082 0.918 23 H 0.058 0.942 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.010 0.990 36 H 0.009 0.991 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.255 -12.144 -13.987 18.525 hybrid contribution 0.396 1.019 0.809 1.360 sum 0.141 -11.125 -13.179 17.247 Atomic orbital electron populations 1.21818 0.95796 1.01868 1.01592 1.21535 0.96090 0.95263 1.02255 1.21070 0.95019 0.96395 0.97944 0.93963 1.21566 1.00738 0.94659 0.97189 1.21413 0.95332 0.97772 1.00863 1.21994 0.97168 1.00546 0.97634 1.22339 0.96725 0.92903 0.86448 0.92312 1.87940 1.45584 1.49069 1.49352 1.22421 0.92875 0.88344 0.95257 1.18901 0.95373 0.94173 0.92218 1.21515 1.03880 1.16937 1.16021 0.91548 1.26060 0.96651 1.00313 0.96782 1.70142 1.20851 1.41702 1.24577 0.85251 0.78756 0.77932 0.78193 1.18212 1.20165 1.20122 1.21680 0.96292 0.93555 1.02626 0.91760 0.94244 0.92002 0.90396 0.92586 0.90201 0.91658 0.91107 0.94640 0.93280 0.88765 0.94251 0.94143 0.99049 0.99091 0.92538 0.88316 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.67 71.98 0.70 -2.24 16 2 C -0.11 -2.28 5.40 30.59 0.17 -2.11 16 3 C -0.09 -2.16 2.04 -10.79 -0.02 -2.19 16 4 H 0.04 1.41 7.68 -2.39 -0.02 1.39 16 5 C -0.10 -2.32 4.96 30.60 0.15 -2.16 16 6 C -0.12 -3.10 5.78 30.60 0.18 -2.92 16 7 C -0.14 -3.58 5.63 30.59 0.17 -3.41 16 8 C 0.07 2.23 2.92 30.59 0.09 2.32 16 9 H 0.06 1.70 7.79 -2.39 -0.02 1.68 16 10 O -0.40 -16.61 8.64 -148.98 -1.29 -17.90 16 11 C 0.09 3.99 5.69 71.98 0.41 4.39 16 12 C 0.03 1.75 5.34 29.85 0.16 1.91 16 13 C -0.55 -32.11 9.11 25.60 0.23 -31.88 16 14 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 15 C 0.00 0.00 5.46 84.66 0.46 0.46 16 16 N -0.93 -58.50 13.29 21.45 0.28 -58.21 16 17 Si 0.98 44.70 29.54 68.60 2.03 46.73 16 18 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 C -0.10 -2.61 4.95 30.59 0.15 -2.46 16 22 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 1.09 6.56 -2.39 -0.02 1.08 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 1.40 8.14 -2.38 -0.02 1.39 16 28 H 0.06 1.38 6.57 -2.39 -0.02 1.37 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.03 1.20 7.68 -2.39 -0.02 1.19 16 31 H 0.05 1.41 7.87 -2.38 -0.02 1.39 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.04 1.72 7.87 -2.38 -0.02 1.70 16 34 H 0.04 1.76 8.09 -2.38 -0.02 1.74 16 35 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -66.97 305.44 4.84 -62.13 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.97 Total: 7.54 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 2.84 Total: -40.29 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.28 Total: -58.21 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -1.29 Total: -17.90 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -66.97 4.84 -62.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070564464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.991 kcal (2) G-P(sol) polarization free energy of solvation -66.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds