Wall clock time and date at job start Mon Mar 30 2020 02:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46505 * 109.46829 * 2 1 4 4 C 1.34768 * 119.99795 * 180.02562 * 3 2 1 5 5 O 1.21582 * 120.00254 * 355.16827 * 4 3 2 6 6 N 1.34777 * 120.00149 * 175.16837 * 4 3 2 7 7 C 1.37192 * 120.00062 * 185.62285 * 6 4 3 8 8 H 1.07997 * 119.99614 * 224.32399 * 7 6 4 9 9 C 1.38875 * 120.00094 * 44.32807 * 7 6 4 10 10 N 1.31474 * 119.99960 * 6.00084 * 9 7 6 11 11 Si 1.86803 * 119.99936 * 185.99900 * 9 7 6 12 12 H 1.48492 * 109.47260 * 89.99896 * 11 9 7 13 13 H 1.48503 * 109.46945 * 209.99928 * 11 9 7 14 14 H 1.48497 * 109.47053 * 329.99826 * 11 9 7 15 15 C 1.46499 * 119.99784 * 5.34521 * 6 4 3 16 16 C 1.54268 * 110.03333 * 231.96136 * 15 6 4 17 17 C 1.54962 * 104.16114 * 217.13815 * 16 15 6 18 18 C 1.54895 * 102.77891 * 37.88410 * 17 16 15 19 19 C 1.53876 * 110.03143 * 114.74395 * 15 6 4 20 20 H 1.09003 * 109.46886 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46960 * 299.99282 * 1 2 3 22 22 H 1.08997 * 109.47237 * 60.00083 * 1 2 3 23 23 H 1.09001 * 109.46960 * 240.00718 * 2 1 3 24 24 H 1.08997 * 109.47237 * 119.99917 * 2 1 3 25 25 H 0.96998 * 120.00065 * 359.97438 * 3 2 1 26 26 H 0.97002 * 119.99698 * 184.99938 * 10 9 7 27 27 H 1.09000 * 110.01931 * 353.35222 * 15 6 4 28 28 H 1.08996 * 110.48503 * 335.78303 * 16 15 6 29 29 H 1.09001 * 110.48520 * 98.42877 * 16 15 6 30 30 H 1.09004 * 110.71755 * 279.57436 * 17 16 15 31 31 H 1.08996 * 110.92760 * 156.29255 * 17 16 15 32 32 H 1.08996 * 110.48950 * 203.40680 * 18 17 16 33 33 H 1.08999 * 110.59490 * 80.81717 * 18 17 16 34 34 H 1.08999 * 110.03298 * 238.56920 * 19 15 6 35 35 H 1.09001 * 110.03144 * 359.97438 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1328 0.7072 0.0877 6 7 3.7933 2.8942 -0.0988 7 6 5.1385 3.1372 -0.2156 8 1 5.5976 3.9230 0.3657 9 6 5.9096 2.3726 -1.0813 10 7 5.3340 1.4968 -1.8751 11 14 7.7647 2.5888 -1.1180 12 1 8.3904 1.6629 -0.1401 13 1 8.2715 2.2859 -2.4807 14 1 8.1070 3.9894 -0.7626 15 6 2.8455 4.0112 -0.0871 16 6 3.0982 4.9315 -1.2992 17 6 2.8470 6.3587 -0.7504 18 6 3.4356 6.2842 0.6804 19 6 3.0595 4.8709 1.1710 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5138 0.8900 25 1 1.3880 2.1185 -0.0004 26 1 5.8768 0.9122 -2.4270 27 1 1.8233 3.6335 -0.1119 28 1 4.1268 4.8319 -1.6458 29 1 2.3995 4.7028 -2.1040 30 1 1.7795 6.5770 -0.7181 31 1 3.3741 7.1034 -1.3466 32 1 2.9831 7.0427 1.3191 33 1 4.5187 6.4039 0.6561 34 1 2.1409 4.9110 1.7565 35 1 3.8682 4.4567 1.7731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070714941.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:58 Heat of formation + Delta-G solvation = -20.544936 kcal Electronic energy + Delta-G solvation = -16715.770645 eV Core-core repulsion = 14135.196111 eV Total energy + Delta-G solvation = -2580.574534 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.96408 -36.89728 -34.41966 -32.93467 -31.41735 -29.27102 -28.00472 -26.76575 -24.50257 -22.10487 -20.08827 -20.01521 -19.04017 -17.55409 -15.90451 -15.07775 -14.86280 -14.51307 -14.30155 -14.00469 -13.09755 -12.91493 -12.65390 -12.49947 -11.93049 -11.34816 -11.24563 -11.19591 -10.94363 -10.77503 -10.61870 -10.55056 -10.42085 -10.36504 -10.13073 -10.02774 -9.70582 -8.64218 -8.10089 -7.74884 -6.92666 -5.84301 -3.68005 3.39600 3.44868 3.46682 4.17744 4.57298 4.99284 5.21788 5.29132 5.36920 5.51450 5.52897 5.62734 5.68490 5.76948 5.95805 6.12111 6.17973 6.18518 6.28146 6.36047 6.45417 6.47196 6.52265 6.59163 6.66625 6.84206 7.02251 7.25186 7.73518 7.79870 8.06899 8.71977 9.34557 9.63828 9.94981 10.72492 11.20768 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.014049 C = 0.008650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.416384 B = 1992.567610 C = 3236.148614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 N -0.771 5.771 4 C 0.684 3.316 5 O -0.568 6.568 6 N -0.475 5.475 7 C -0.316 4.316 8 H 0.074 0.926 9 C 0.058 3.942 10 N -0.836 5.836 11 Si 0.906 3.094 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.139 3.861 16 C -0.125 4.125 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.133 4.133 20 H 0.063 0.937 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.378 0.622 26 H 0.258 0.742 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.678 5.464 2.441 10.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.016 3.984 3 N -0.433 5.433 4 C 0.387 3.613 5 O -0.443 6.443 6 N -0.202 5.202 7 C -0.445 4.445 8 H 0.092 0.908 9 C -0.151 4.151 10 N -0.471 5.471 11 Si 0.734 3.266 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.199 1.199 15 C 0.033 3.967 16 C -0.163 4.163 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.172 4.172 20 H 0.082 0.918 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.213 0.787 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.014 4.645 2.296 9.543 hybrid contribution 0.546 0.317 -0.152 0.649 sum -7.468 4.963 2.144 9.220 Atomic orbital electron populations 1.21987 0.96088 1.01991 1.01725 1.20791 0.92073 0.84363 1.01158 1.45451 1.06721 1.06660 1.84501 1.15992 0.80680 0.84664 0.79918 1.90718 1.54270 1.43138 1.56200 1.42569 1.05170 1.00820 1.71603 1.18639 0.81979 1.21415 1.22433 0.90815 1.25286 0.98841 0.96883 0.94103 1.69899 1.35194 1.19378 1.22596 0.86295 0.85088 0.78186 0.77054 1.20761 1.21468 1.19935 1.21528 0.92205 0.89195 0.93747 1.22649 1.03807 0.92740 0.97128 1.22457 0.99485 0.97747 0.96401 1.22255 1.00800 0.96428 0.95984 1.22534 1.00838 0.95369 0.98425 0.91756 0.92658 0.92570 0.92828 0.93072 0.78721 0.93143 0.92503 0.88904 0.93090 0.92598 0.92368 0.92982 0.91646 0.93084 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 10.03 37.16 0.37 -1.72 16 2 C 0.14 2.62 6.40 -4.04 -0.03 2.59 16 3 N -0.77 -16.35 5.46 -65.22 -0.36 -16.71 16 4 C 0.68 18.33 7.36 -86.93 -0.64 17.69 16 5 O -0.57 -17.83 13.97 5.29 0.07 -17.75 16 6 N -0.48 -12.07 2.44 -111.85 -0.27 -12.35 16 7 C -0.32 -8.74 7.22 -14.92 -0.11 -8.85 16 8 H 0.07 1.98 7.52 -52.49 -0.39 1.59 16 9 C 0.06 1.66 4.77 -17.47 -0.08 1.58 16 10 N -0.84 -25.63 11.04 55.49 0.61 -25.02 16 11 Si 0.91 22.30 29.56 -169.99 -5.02 17.28 16 12 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.14 2.78 3.28 -66.81 -0.22 2.56 16 16 C -0.12 -2.36 6.40 -25.03 -0.16 -2.52 16 17 C -0.12 -1.85 6.91 -24.70 -0.17 -2.02 16 18 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 19 C -0.13 -2.33 6.28 -25.61 -0.16 -2.49 16 20 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.38 6.90 5.88 -40.82 -0.24 6.66 16 26 H 0.26 7.70 8.32 -40.82 -0.34 7.36 16 27 H 0.06 1.03 5.51 -51.93 -0.29 0.75 16 28 H 0.09 2.07 6.79 -51.93 -0.35 1.72 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.46 7.38 -51.93 -0.38 1.07 16 LS Contribution 280.24 15.07 4.22 4.22 Total: -1.00 -33.63 280.24 -7.55 -41.19 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.44 Total: 4.30 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.37 Total: 4.83 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.02 Total: -54.07 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.07 Total: -17.75 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.63 -7.55 -41.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070714941.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.641 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds