Wall clock time and date at job start Mon Mar 30 2020 03:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47328 * 2 1 4 4 C 1.52997 * 109.46987 * 240.00075 * 2 1 3 5 5 C 1.53000 * 109.47236 * 119.99959 * 2 1 3 6 6 C 1.53004 * 109.47035 * 59.99534 * 5 2 1 7 7 C 1.53000 * 109.47035 * 179.97438 * 6 5 2 8 8 C 1.53003 * 109.47236 * 300.00466 * 7 6 5 9 9 O 1.42899 * 109.47035 * 299.99859 * 8 7 6 10 10 C 1.50703 * 109.47319 * 179.97438 * 8 7 6 11 11 H 1.08003 * 119.99761 * 355.46240 * 10 8 7 12 12 C 1.37878 * 120.00164 * 175.45885 * 10 8 7 13 13 N 1.31514 * 119.99692 * 2.12679 * 12 10 8 14 14 Si 1.86798 * 120.00048 * 181.85632 * 12 10 8 15 15 H 1.48496 * 109.47129 * 84.98787 * 14 12 10 16 16 H 1.48498 * 109.47017 * 204.99282 * 14 12 10 17 17 H 1.48510 * 109.46684 * 324.98863 * 14 12 10 18 18 C 1.52998 * 109.47328 * 60.00041 * 8 7 6 19 19 C 1.53003 * 109.47236 * 179.97438 * 5 2 1 20 20 H 1.08999 * 109.46793 * 300.00265 * 1 2 3 21 21 H 1.08992 * 109.47147 * 59.99647 * 1 2 3 22 22 H 1.09001 * 109.46967 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47356 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.46747 * 300.00166 * 3 2 1 25 25 H 1.08999 * 109.47436 * 59.99551 * 3 2 1 26 26 H 1.09008 * 109.47142 * 299.99508 * 4 2 1 27 27 H 1.08992 * 109.47435 * 59.99947 * 4 2 1 28 28 H 1.08997 * 109.46994 * 180.02562 * 4 2 1 29 29 H 1.09004 * 109.47243 * 300.00075 * 5 2 1 30 30 H 1.09003 * 109.46699 * 60.00741 * 6 5 2 31 31 H 1.08989 * 109.47247 * 300.00242 * 6 5 2 32 32 H 1.09001 * 109.47540 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.47046 * 60.00086 * 7 6 5 34 34 H 0.96703 * 113.99959 * 173.89069 * 9 8 7 35 35 H 0.97005 * 119.99788 * 179.72635 * 13 12 10 36 36 H 1.08999 * 109.47436 * 59.99551 * 18 8 7 37 37 H 1.08996 * 109.47356 * 180.02562 * 18 8 7 38 38 H 1.08999 * 109.46793 * 299.99776 * 19 5 2 39 39 H 1.08994 * 109.46742 * 59.99834 * 19 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7212 1.2492 6 6 1.5299 -2.1637 1.2493 7 6 2.0405 -2.8852 2.4982 8 6 3.5705 -2.8852 2.4976 9 8 4.0463 -3.5587 1.3305 10 6 4.0734 -3.5952 3.7280 11 1 3.3747 -3.9408 4.4755 12 6 5.4255 -3.8036 3.8995 13 7 6.2794 -3.3460 3.0100 14 14 6.0451 -4.7293 5.3991 15 1 5.9980 -6.1896 5.1337 16 1 7.4440 -4.3234 5.6882 17 1 5.1856 -4.4105 6.5675 18 6 4.0806 -1.4427 2.4976 19 6 3.5701 -0.7218 1.2489 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6767 -1.7490 -1.2492 27 1 1.6767 -0.2075 -2.1392 28 1 3.1300 -0.7216 -1.2490 29 1 1.6767 -0.2074 2.1393 30 1 1.8934 -2.6776 0.3593 31 1 0.4401 -2.1637 1.2493 32 1 1.6775 -3.9130 2.4981 33 1 1.6776 -2.3714 3.3884 34 1 5.0056 -3.5162 1.2155 35 1 7.2309 -3.4892 3.1327 36 1 3.7176 -0.9289 3.3877 37 1 5.1705 -1.4427 2.4966 38 1 3.9330 -1.2359 0.3589 39 1 3.9337 0.3057 1.2486 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075598419.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:13 Heat of formation + Delta-G solvation = -104.690678 kcal Electronic energy + Delta-G solvation = -17226.622479 eV Core-core repulsion = 14745.939455 eV Total energy + Delta-G solvation = -2480.683024 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.64747 -37.95174 -34.39896 -33.95278 -31.62489 -30.01582 -28.09259 -27.97494 -26.69732 -23.17506 -22.94586 -20.45946 -19.11259 -18.79088 -16.96693 -16.55924 -16.03020 -15.42062 -15.09405 -14.83599 -14.72929 -14.29451 -14.03363 -13.39752 -13.12180 -13.08705 -12.96037 -12.78008 -12.56445 -12.52219 -12.44143 -12.31871 -12.00234 -11.82354 -11.73160 -11.63167 -11.23931 -10.99440 -10.85497 -10.51486 -10.37654 -9.81981 -8.13424 -6.30654 1.38559 1.40216 1.48843 2.39920 3.07725 3.86230 3.94418 3.99759 4.26247 4.30262 4.44775 4.60483 4.69001 4.74639 4.80266 4.84270 4.91523 4.94321 4.98672 5.04273 5.06413 5.17362 5.18670 5.20167 5.29145 5.33247 5.41032 5.49816 5.55254 5.59212 5.64341 5.70053 5.78861 5.92441 6.13392 6.29987 6.75086 7.40520 7.61027 8.87421 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050871 B = 0.007540 C = 0.007301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.275380 B = 3712.815259 C = 3834.038068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.062 4.062 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.065 4.065 6 C -0.100 4.100 7 C -0.097 4.097 8 C 0.243 3.757 9 O -0.594 6.594 10 C -0.565 4.565 11 H 0.046 0.954 12 C 0.028 3.972 13 N -0.913 5.913 14 Si 0.954 3.046 15 H -0.278 1.278 16 H -0.279 1.279 17 H -0.273 1.273 18 C -0.127 4.127 19 C -0.101 4.101 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.370 0.630 35 H 0.267 0.733 36 H 0.032 0.968 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.947 7.712 -5.703 12.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 C -0.196 4.196 4 C -0.197 4.197 5 C -0.084 4.084 6 C -0.138 4.138 7 C -0.135 4.135 8 C 0.203 3.797 9 O -0.402 6.402 10 C -0.603 4.603 11 H 0.064 0.936 12 C -0.172 4.172 13 N -0.553 5.553 14 Si 0.780 3.220 15 H -0.204 1.204 16 H -0.205 1.205 17 H -0.198 1.198 18 C -0.166 4.166 19 C -0.138 4.138 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.219 0.781 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.407 7.606 -5.812 12.740 hybrid contribution 1.396 -0.684 1.180 1.952 sum -7.012 6.923 -4.632 10.887 Atomic orbital electron populations 1.21887 0.93802 1.01874 1.01995 1.20524 0.96064 0.95354 0.94285 1.21890 1.00856 0.94953 1.01945 1.21923 1.00647 1.00095 0.97069 1.21085 0.94659 0.95156 0.97478 1.21538 0.99374 0.95384 0.97469 1.21446 0.95258 0.98801 0.98004 1.18732 0.90152 0.88211 0.82568 1.86088 1.27599 1.79388 1.47133 1.22177 0.92730 1.38274 1.07113 0.93584 1.25647 0.96886 0.95601 0.99027 1.69658 1.02690 1.46274 1.36717 0.85648 0.77462 0.78922 0.79981 1.20413 1.20458 1.19772 1.21975 1.01214 0.97312 0.96086 1.21550 0.95735 0.98724 0.97834 0.92566 0.91639 0.92708 0.93208 0.91581 0.92642 0.93271 0.91683 0.93645 0.92324 0.92649 0.91313 0.94397 0.92506 0.78137 0.92370 0.94966 0.92622 0.93051 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.12 71.98 0.58 -2.45 16 2 C -0.06 -1.61 0.57 -52.18 -0.03 -1.64 16 3 C -0.14 -3.22 8.12 71.98 0.58 -2.63 16 4 C -0.14 -3.71 7.77 71.98 0.56 -3.15 16 5 C -0.07 -2.14 1.55 -10.79 -0.02 -2.16 16 6 C -0.10 -3.61 4.35 30.60 0.13 -3.48 16 7 C -0.10 -4.27 4.89 30.60 0.15 -4.12 16 8 C 0.24 12.28 0.66 -11.54 -0.01 12.27 16 9 O -0.59 -31.65 11.57 -148.98 -1.72 -33.38 16 10 C -0.56 -31.67 8.22 25.60 0.21 -31.46 16 11 H 0.05 2.59 7.75 -2.91 -0.02 2.57 16 12 C 0.03 1.52 5.25 84.66 0.44 1.96 16 13 N -0.91 -50.29 9.79 21.45 0.21 -50.08 16 14 Si 0.95 43.72 29.54 68.60 2.03 45.74 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 C -0.13 -6.02 4.68 30.58 0.14 -5.88 16 19 C -0.10 -3.87 4.35 30.58 0.13 -3.74 16 20 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.05 1.24 6.43 -2.39 -0.02 1.22 16 23 H 0.05 1.24 6.43 -2.39 -0.02 1.22 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.39 6.43 -2.38 -0.02 1.37 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.32 6.43 -2.39 -0.02 1.30 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.05 2.14 5.97 -2.39 -0.01 2.13 16 31 H 0.07 2.12 6.43 -2.39 -0.02 2.11 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.37 20.42 6.99 -74.05 -0.52 19.90 16 35 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 36 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 2.93 6.36 -2.39 -0.02 2.91 16 38 H 0.05 2.08 5.97 -2.39 -0.01 2.06 16 39 H 0.06 1.96 6.43 -2.39 -0.02 1.95 16 Total: -1.00 -57.65 283.93 3.90 -53.75 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.50 Total: 30.44 kcal Atomic # 6 Polarization: -49.37 SS G_CDS: 2.89 Total: -46.48 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.21 Total: -50.08 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.72 Total: -33.38 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -57.65 3.90 -53.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075598419.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.938 kcal (2) G-P(sol) polarization free energy of solvation -57.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds