Wall clock time and date at job start Mon Mar 30 2020 02:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.45746 * 117.94721 * 2 1 4 4 C 1.52929 * 110.48667 * 199.07744 * 3 2 1 5 5 H 1.08998 * 109.73672 * 69.08328 * 4 3 2 6 6 N 1.46899 * 109.60330 * 189.48891 * 4 3 2 7 7 C 1.46896 * 111.00159 * 274.18720 * 6 4 3 8 8 C 1.52997 * 109.47114 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00200 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00139 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47145 * 89.99836 * 13 11 9 15 15 H 1.48496 * 109.47547 * 210.00333 * 13 11 9 16 16 H 1.48499 * 109.47030 * 330.00237 * 13 11 9 17 17 C 1.53342 * 108.67387 * 309.24502 * 4 3 2 18 18 C 1.53077 * 108.42301 * 67.53055 * 17 4 3 19 19 C 1.33361 * 117.94421 * 180.02562 * 2 1 3 20 20 O 1.21280 * 118.24569 * 357.74855 * 19 2 1 21 21 H 1.08998 * 109.47644 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46877 * 299.99704 * 1 2 3 23 23 H 1.09000 * 109.47543 * 59.99920 * 1 2 3 24 24 H 1.09001 * 109.30635 * 78.76839 * 3 2 1 25 25 H 1.09002 * 109.30170 * 319.38366 * 3 2 1 26 26 H 1.00907 * 110.99807 * 38.13996 * 6 4 3 27 27 H 1.09001 * 109.47271 * 60.00184 * 7 6 4 28 28 H 1.09004 * 109.47041 * 300.00031 * 7 6 4 29 29 H 1.09001 * 109.46832 * 59.99999 * 8 7 6 30 30 H 1.09000 * 109.47611 * 300.00296 * 8 7 6 31 31 H 0.96999 * 120.00061 * 179.97438 * 12 11 9 32 32 H 1.08999 * 109.67744 * 187.26350 * 17 4 3 33 33 H 1.09001 * 109.67857 * 307.80305 * 17 4 3 34 34 H 1.08996 * 109.40052 * 71.22821 * 18 17 4 35 35 H 1.09002 * 109.40077 * 191.05166 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5949 1.1258 -0.4682 5 1 3.6126 0.8738 -1.5285 6 7 4.3274 2.3798 -0.2474 7 6 4.1508 3.2991 -1.3795 8 6 4.9261 4.5909 -1.1131 9 6 4.7454 5.5338 -2.2748 10 1 4.1379 5.2410 -3.1185 11 6 5.3555 6.7701 -2.2606 12 7 5.1974 7.5931 -3.2742 13 14 6.4055 7.2768 -0.8011 14 1 7.8119 6.8614 -1.0352 15 1 6.3457 8.7514 -0.6364 16 1 5.8937 6.6202 0.4286 17 6 4.2493 -0.0014 0.3396 18 6 3.5837 -1.3241 -0.0487 19 6 2.0899 -1.1781 -0.0005 20 8 1.4158 -2.1855 0.0410 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 2.1399 1.6997 1.0090 25 1 1.6270 1.9718 -0.6697 26 1 4.0468 2.8148 0.6188 27 1 3.0921 3.5292 -1.4989 28 1 4.5258 2.8309 -2.2896 29 1 5.9848 4.3611 -0.9935 30 1 4.5508 5.0589 -0.2031 31 1 5.6263 8.4631 -3.2640 32 1 5.3143 -0.0457 0.1117 33 1 4.1087 0.1812 1.4049 34 1 3.8879 -1.5998 -1.0584 35 1 3.8930 -2.1033 0.6480 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082756977.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:18 Heat of formation + Delta-G solvation = -42.794513 kcal Electronic energy + Delta-G solvation = -15633.364566 eV Core-core repulsion = 13051.825217 eV Total energy + Delta-G solvation = -2581.539348 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.59737 -37.53783 -35.19653 -33.85526 -32.54977 -30.25880 -27.94580 -26.93275 -24.64469 -23.55242 -21.64194 -20.56189 -18.81769 -16.91125 -16.64540 -16.60879 -15.98866 -14.93281 -14.61849 -14.51274 -14.10276 -13.54201 -13.48006 -13.14077 -12.73620 -12.57566 -12.35210 -11.96885 -11.77002 -11.53954 -11.35917 -11.08020 -10.94777 -10.29360 -9.86898 -9.80931 -9.75898 -9.29531 -8.88427 -8.58892 -8.16283 -6.09310 -4.08492 2.51961 2.88258 3.29117 3.36417 3.39716 4.20018 4.41458 4.51356 4.57020 4.68893 5.00781 5.14592 5.23094 5.25164 5.27152 5.36121 5.42834 5.58290 5.65665 5.71533 5.96001 6.00441 6.08864 6.15883 6.23570 6.66149 6.98545 7.28091 7.28757 7.45456 7.60527 7.78571 8.02547 8.46794 8.94192 9.52687 11.03943 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.051118 B = 0.005028 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.622003 B = 5567.078096 C = 5812.642051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.602 5.602 3 C 0.084 3.916 4 C 0.073 3.927 5 H 0.087 0.913 6 N -0.679 5.679 7 C 0.071 3.929 8 C -0.010 4.010 9 C -0.524 4.524 10 H 0.071 0.929 11 C 0.068 3.932 12 N -0.903 5.903 13 Si 0.883 3.117 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.265 1.265 17 C -0.113 4.113 18 C -0.133 4.133 19 C 0.516 3.484 20 O -0.564 6.564 21 H 0.090 0.910 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.339 0.661 27 H 0.024 0.976 28 H 0.067 0.933 29 H 0.022 0.978 30 H 0.014 0.986 31 H 0.264 0.736 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 -13.810 8.379 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.335 5.335 3 C -0.041 4.041 4 C -0.038 4.038 5 H 0.105 0.895 6 N -0.309 5.309 7 C -0.057 4.057 8 C -0.048 4.048 9 C -0.562 4.562 10 H 0.089 0.911 11 C -0.134 4.134 12 N -0.542 5.542 13 Si 0.710 3.290 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.190 1.190 17 C -0.151 4.151 18 C -0.173 4.173 19 C 0.306 3.694 20 O -0.443 6.443 21 H 0.109 0.891 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.157 0.843 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.555 -14.369 8.088 17.107 hybrid contribution -0.427 0.952 0.755 1.288 sum -4.982 -13.417 8.843 16.824 Atomic orbital electron populations 1.21789 0.79838 1.04491 1.01423 1.47159 1.07458 1.06161 1.72751 1.22365 0.95202 0.84603 1.01960 1.21879 0.88973 0.92427 1.00539 0.89525 1.60771 1.58074 1.05445 1.06621 1.22063 0.98324 0.93343 0.91992 1.19551 0.95954 0.91924 0.97377 1.21046 1.31613 0.99475 1.04073 0.91118 1.25006 0.96092 0.96346 0.95921 1.69912 1.44469 1.08939 1.30845 0.86731 0.81129 0.77432 0.83674 1.20203 1.21491 1.19011 1.21694 1.01305 0.91859 1.00238 1.21647 0.90606 1.00035 1.04980 1.20303 0.91260 0.82592 0.75292 1.90677 1.66580 1.35860 1.51207 0.89085 0.92275 0.92115 0.91524 0.90406 0.84326 0.95741 0.91466 0.95986 0.96802 0.92664 0.89388 0.91379 0.88115 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 10.47 59.85 0.63 1.33 16 2 N -0.60 -7.10 3.21 -182.86 -0.59 -7.69 16 3 C 0.08 0.92 5.71 -4.48 -0.03 0.90 16 4 C 0.07 0.87 2.54 -67.57 -0.17 0.70 16 5 H 0.09 1.09 7.78 -51.93 -0.40 0.69 16 6 N -0.68 -9.82 6.26 -106.58 -0.67 -10.49 16 7 C 0.07 1.29 5.43 -3.83 -0.02 1.27 16 8 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 9 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 10 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 11 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 12 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 13 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 17 C -0.11 -1.14 5.65 -26.51 -0.15 -1.29 16 18 C -0.13 -1.33 6.03 -28.10 -0.17 -1.50 16 19 C 0.52 6.71 7.47 -11.87 -0.09 6.62 16 20 O -0.56 -9.16 15.95 5.56 0.09 -9.07 16 21 H 0.09 1.05 6.59 -51.93 -0.34 0.71 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.68 7.93 -51.93 -0.41 0.27 16 25 H 0.08 0.88 7.72 -51.93 -0.40 0.48 16 26 H 0.34 4.56 8.33 -39.29 -0.33 4.23 16 27 H 0.02 0.44 7.69 -51.93 -0.40 0.04 16 28 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 29 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 30 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 284.34 15.07 4.29 4.29 Total: -1.00 -31.73 284.34 -6.92 -38.65 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.59 Total: -0.36 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -0.55 Total: -5.32 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.48 Total: -44.82 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.73 -6.92 -38.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082756977.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.146 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds