Wall clock time and date at job start Mon Mar 30 2020 03:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46951 * 2 1 4 4 C 1.52998 * 109.46951 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46951 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46951 * 180.02562 * 5 4 3 7 7 O 1.42906 * 109.46630 * 179.97438 * 6 5 4 8 8 C 1.42901 * 113.99458 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47004 * 179.97438 * 8 7 6 10 10 C 1.50699 * 115.55413 * 294.87593 * 9 8 7 11 11 H 1.08002 * 120.00022 * 99.47192 * 10 9 8 12 12 C 1.37876 * 120.00005 * 279.20430 * 10 9 8 13 13 N 1.31515 * 119.99897 * 355.32736 * 12 10 9 14 14 Si 1.86803 * 119.99877 * 175.32796 * 12 10 9 15 15 H 1.48495 * 109.47030 * 60.00341 * 14 12 10 16 16 H 1.48500 * 109.46719 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47330 * 299.99922 * 14 12 10 18 18 C 1.53007 * 117.51434 * 80.57293 * 9 8 7 19 19 C 1.53001 * 117.50113 * 149.20128 * 9 8 7 20 20 H 1.09002 * 109.47336 * 60.00405 * 1 2 3 21 21 H 1.09007 * 109.47114 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47065 * 300.00001 * 1 2 3 23 23 H 1.09000 * 109.47065 * 239.99999 * 2 1 3 24 24 H 1.09002 * 109.47336 * 119.99595 * 2 1 3 25 25 H 1.09000 * 109.47237 * 60.00103 * 3 2 1 26 26 H 1.09002 * 109.46769 * 299.99942 * 3 2 1 27 27 H 1.09000 * 109.47065 * 59.99999 * 4 3 2 28 28 H 1.09002 * 109.47336 * 299.99595 * 4 3 2 29 29 H 1.09002 * 109.47174 * 59.99575 * 5 4 3 30 30 H 1.09002 * 109.46769 * 299.99942 * 5 4 3 31 31 H 1.09000 * 109.47065 * 59.99999 * 6 5 4 32 32 H 1.08996 * 109.46933 * 299.99498 * 6 5 4 33 33 H 1.09004 * 109.46946 * 60.00243 * 8 7 6 34 34 H 1.09000 * 109.47492 * 300.00071 * 8 7 6 35 35 H 0.97002 * 119.99638 * 179.97438 * 13 12 10 36 36 H 1.08996 * 117.50056 * 214.96776 * 18 9 8 37 37 H 1.09001 * 117.49737 * 0.02562 * 18 9 8 38 38 H 1.09005 * 117.49767 * 359.97438 * 19 9 8 39 39 H 1.09001 * 117.49973 * 144.97471 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.6099 2.8851 -0.0013 7 8 6.0861 4.2325 -0.0013 8 6 7.5107 4.3453 -0.0019 9 6 7.9052 5.8236 -0.0025 10 6 7.5197 6.5988 -1.2360 11 1 6.6359 7.2195 -1.2295 12 6 8.2984 6.5200 -2.3711 13 7 9.4256 5.8427 -2.3495 14 14 7.7524 7.3751 -3.9395 15 1 7.6280 8.8337 -3.6904 16 1 8.7574 7.1397 -5.0071 17 1 6.4382 6.8321 -4.3677 18 6 7.8732 6.5643 1.3360 19 6 9.2139 6.2059 0.6918 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.9329 0.9289 -0.8909 28 1 3.9337 0.9287 0.8892 29 1 3.7169 3.3985 0.8904 30 1 3.7162 3.3994 -0.8896 31 1 5.9725 2.3720 -0.8920 32 1 5.9739 2.3707 0.8880 33 1 7.9131 3.8619 -0.8922 34 1 7.9139 3.8617 0.8878 35 1 9.9733 5.7870 -3.1482 36 1 7.5735 7.6121 1.3243 37 1 7.5715 5.9982 2.2173 38 1 9.7937 5.4042 1.1494 39 1 9.7964 7.0177 0.2561 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:46 Heat of formation + Delta-G solvation = -58.804009 kcal Electronic energy + Delta-G solvation = -15445.517569 eV Core-core repulsion = 12966.824340 eV Total energy + Delta-G solvation = -2478.693229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -37.64344 -36.43815 -35.38054 -32.54673 -31.85258 -28.27134 -26.02292 -24.89382 -23.38970 -21.12687 -20.98825 -20.89334 -19.03891 -16.21562 -16.04260 -15.39319 -15.11350 -14.55187 -14.27864 -13.87197 -13.69788 -13.16913 -13.04757 -12.51064 -12.18310 -11.78273 -11.53859 -11.33702 -11.16494 -10.89348 -10.86068 -10.74490 -10.63464 -10.44280 -10.38457 -10.38010 -10.09878 -9.34172 -9.01446 -8.56420 -8.33376 -8.02568 -5.96701 -4.00065 3.36275 3.39794 3.44086 4.32351 4.47766 4.81584 4.87144 4.96923 5.15982 5.33099 5.38030 5.42270 5.50404 5.58069 5.65965 5.79172 5.80432 5.82995 5.97311 5.98857 6.05534 6.13518 6.20883 6.25143 6.37783 6.46646 6.48720 6.53092 6.77460 6.79864 6.88086 7.14880 7.50701 7.58180 7.96075 8.24825 8.54771 8.99881 9.63928 11.12727 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.028395 B = 0.004978 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.849463 B = 5623.238955 C = 6252.379780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.117 4.117 6 C 0.061 3.939 7 O -0.374 6.374 8 C 0.110 3.890 9 C 0.044 3.956 10 C -0.481 4.481 11 H 0.060 0.940 12 C 0.067 3.933 13 N -0.886 5.886 14 Si 0.891 3.109 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.206 4.206 19 C -0.151 4.151 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.034 0.966 33 H 0.050 0.950 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.943 -9.852 4.459 15.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.017 4.017 7 O -0.293 6.293 8 C 0.034 3.966 9 C 0.043 3.957 10 C -0.519 4.519 11 H 0.078 0.922 12 C -0.135 4.135 13 N -0.524 5.524 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.243 4.243 19 C -0.189 4.189 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.896 -9.741 4.334 15.245 hybrid contribution 0.075 0.117 -0.896 0.907 sum -10.822 -9.625 3.438 14.885 Atomic orbital electron populations 1.21784 0.96108 1.01330 1.01817 1.21547 0.95653 0.97220 1.01894 1.21614 0.95433 0.96427 1.02240 1.21523 0.95245 0.96718 1.01969 1.21492 0.94504 0.96295 1.03148 1.22342 0.94307 0.86099 0.98939 1.87947 1.22853 1.23417 1.95098 1.22127 0.78988 0.98158 0.97375 1.18729 0.96307 0.89909 0.90732 1.20366 1.09617 1.26860 0.95013 0.92233 1.24979 0.94597 0.95325 0.98613 1.70003 1.12109 1.41647 1.28613 0.86677 0.78432 0.80030 0.82977 1.20262 1.21376 1.20160 1.22923 1.03306 1.00463 0.97653 1.22530 0.90472 1.02201 1.03698 0.92761 0.93013 0.92808 0.92112 0.92169 0.91975 0.91888 0.91974 0.92125 0.91502 0.91183 0.94289 0.94800 0.93134 0.96827 0.93126 0.90470 0.91719 0.92045 0.89655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.11 5.93 -26.73 -0.16 -1.26 16 3 C -0.12 -1.21 5.21 -26.73 -0.14 -1.35 16 4 C -0.12 -1.35 5.21 -26.73 -0.14 -1.49 16 5 C -0.12 -1.72 5.58 -26.73 -0.15 -1.87 16 6 C 0.06 1.07 5.94 37.16 0.22 1.29 16 7 O -0.37 -8.59 10.27 -35.23 -0.36 -8.95 16 8 C 0.11 2.65 5.76 37.16 0.21 2.86 16 9 C 0.04 1.14 1.61 -155.66 -0.25 0.89 16 10 C -0.48 -13.74 8.75 -34.44 -0.30 -14.04 16 11 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 12 C 0.07 1.89 5.44 -17.82 -0.10 1.79 16 13 N -0.89 -25.59 12.86 55.43 0.71 -24.87 16 14 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C -0.21 -4.78 9.96 -26.73 -0.27 -5.05 16 19 C -0.15 -3.68 9.39 -26.73 -0.25 -3.93 16 20 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.01 0.30 8.09 -51.93 -0.42 -0.12 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 36 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.08 2.19 8.14 -51.93 -0.42 1.76 16 LS Contribution 323.47 15.07 4.87 4.87 Total: -1.00 -29.44 323.47 -8.32 -37.76 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -7.58 Total: -2.52 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -0.95 Total: -23.00 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.71 Total: -24.87 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.36 Total: -8.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.44 -8.32 -37.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.045 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds