Wall clock time and date at job start Mon Mar 30 2020 03:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47101 * 2 1 4 4 C 1.52993 * 109.47264 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.62643 * 54.61778 * 4 3 2 6 6 C 1.54058 * 109.83379 * 294.09772 * 4 3 2 7 7 C 1.45542 * 112.51040 * 160.14930 * 6 4 3 8 8 C 1.54235 * 112.32952 * 61.98309 * 7 6 4 9 9 C 1.50481 * 108.52359 * 280.06081 * 8 7 6 10 10 O 1.42896 * 108.87340 * 333.37248 * 9 8 7 11 11 C 1.50704 * 108.87580 * 214.92786 * 9 8 7 12 12 H 1.07997 * 119.99934 * 239.99520 * 11 9 8 13 13 C 1.37877 * 119.99732 * 60.00200 * 11 9 8 14 14 N 1.31510 * 120.00243 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99916 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46940 * 59.99695 * 15 13 11 17 17 H 1.48501 * 109.47190 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46707 * 299.99677 * 15 13 11 19 19 C 1.54059 * 112.49724 * 94.15272 * 9 8 7 20 20 C 1.50479 * 109.62990 * 174.99724 * 4 3 2 21 21 H 1.09001 * 109.47122 * 300.00038 * 1 2 3 22 22 H 1.09004 * 109.47247 * 60.00003 * 1 2 3 23 23 H 1.09003 * 109.47091 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47122 * 239.99962 * 2 1 3 25 25 H 1.08994 * 109.47261 * 119.99853 * 2 1 3 26 26 H 1.09004 * 109.46793 * 59.99641 * 3 2 1 27 27 H 1.09004 * 109.47068 * 300.00107 * 3 2 1 28 28 H 1.08996 * 108.76698 * 39.41450 * 6 4 3 29 29 H 1.09002 * 108.91686 * 280.98703 * 6 4 3 30 30 H 1.09002 * 108.89568 * 301.27699 * 7 6 4 31 31 H 1.09003 * 108.89439 * 182.68883 * 7 6 4 32 32 H 1.09000 * 109.63044 * 39.76897 * 8 7 6 33 33 H 1.09000 * 109.63070 * 160.15479 * 8 7 6 34 34 H 0.96699 * 114.00251 * 299.99903 * 10 9 8 35 35 H 0.97002 * 120.00056 * 179.97438 * 14 13 11 36 36 H 1.09006 * 108.81828 * 79.14290 * 19 9 8 37 37 H 1.09000 * 108.81554 * 197.53598 * 19 9 8 38 38 H 1.09002 * 108.87504 * 93.28145 * 20 4 3 39 39 H 1.08997 * 108.79566 * 334.78574 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9365 0.8480 -0.8362 6 6 4.0921 0.8511 1.3238 7 6 5.4709 0.3955 1.2249 8 6 6.4453 1.5444 0.8943 9 6 6.3780 1.8180 -0.5839 10 8 5.9765 0.6233 -1.2573 11 6 7.7492 2.2112 -1.0700 12 1 7.9037 3.1777 -1.5265 13 6 8.8064 1.3370 -0.9319 14 7 8.6184 0.1603 -0.3756 15 14 10.5060 1.8241 -1.5350 16 1 10.9542 3.0453 -0.8187 17 1 11.4607 0.7177 -1.2714 18 1 10.4541 2.0969 -2.9939 19 6 5.3846 2.9434 -0.9304 20 6 4.0755 2.8545 -0.1229 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.4610 0.0078 1.6042 29 1 4.0268 1.6123 2.1013 30 1 5.5376 -0.3602 0.4422 31 1 5.7633 -0.0533 2.1742 32 1 6.1569 2.4393 1.4457 33 1 7.4594 1.2553 1.1702 34 1 6.5777 -0.1227 -1.1269 35 1 9.3621 -0.4548 -0.2789 36 1 5.8576 3.9045 -0.7283 37 1 5.1453 2.8865 -1.9923 38 1 4.2491 3.2556 0.8756 39 1 3.3144 3.4580 -0.6175 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:15 Heat of formation + Delta-G solvation = -84.762972 kcal Electronic energy + Delta-G solvation = -17111.353925 eV Core-core repulsion = 14631.535031 eV Total energy + Delta-G solvation = -2479.818894 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.84825 -35.75462 -33.18353 -31.95295 -31.55615 -29.88451 -26.61857 -25.03940 -23.46720 -21.91414 -20.76073 -19.19653 -18.03866 -16.83923 -15.23988 -14.87321 -14.76590 -14.18389 -13.76998 -13.21548 -13.15077 -13.06430 -12.27422 -12.12290 -11.85326 -11.72012 -11.27823 -11.06603 -10.99606 -10.87410 -10.66522 -10.49767 -10.24282 -10.18748 -9.85832 -9.77754 -9.40208 -9.33792 -9.22521 -8.80570 -8.39610 -7.83136 -6.07536 -4.18935 3.28349 3.33049 3.36324 4.37673 5.13494 5.16590 5.20099 5.36829 5.49696 5.67992 5.79348 5.89586 5.99317 6.07317 6.09557 6.21862 6.29780 6.32098 6.34208 6.45586 6.53078 6.57677 6.66099 6.74033 6.80301 6.97069 7.08014 7.11309 7.18211 7.32306 7.36680 7.57469 7.74935 7.89686 8.09679 8.34237 8.84859 9.49150 9.72751 10.94118 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050685 B = 0.007243 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.301878 B = 3864.868962 C = 4002.638616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.091 4.091 5 H 0.101 0.899 6 C -0.098 4.098 7 C -0.115 4.115 8 C -0.119 4.119 9 C 0.253 3.747 10 O -0.589 6.589 11 C -0.536 4.536 12 H 0.055 0.945 13 C 0.067 3.933 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.095 4.095 20 C -0.107 4.107 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.378 0.622 35 H 0.265 0.735 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.860 0.277 2.339 10.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.149 4.149 4 C -0.109 4.109 5 H 0.119 0.881 6 C -0.135 4.135 7 C -0.152 4.152 8 C -0.158 4.158 9 C 0.214 3.786 10 O -0.400 6.400 11 C -0.574 4.574 12 H 0.073 0.927 13 C -0.134 4.134 14 N -0.538 5.538 15 Si 0.723 3.277 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.133 4.133 20 C -0.145 4.145 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.101 0.899 34 H 0.229 0.771 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.254 0.500 2.203 10.500 hybrid contribution 1.533 -0.013 -0.029 1.534 sum -8.721 0.487 2.174 9.001 Atomic orbital electron populations 1.21791 0.96782 1.00956 1.01295 1.21596 0.94703 0.97800 1.02274 1.21705 0.96557 0.95886 1.00712 1.21044 0.92566 0.97485 0.99850 0.88060 1.20465 0.97427 0.99144 0.96489 1.20340 0.94153 1.00593 1.00130 1.21889 1.00044 0.95172 0.98651 1.18272 0.90069 0.82038 0.88229 1.86101 1.54044 1.23656 1.76188 1.21941 0.94160 1.02104 1.39221 0.92718 1.24964 0.98988 0.95038 0.94411 1.69605 1.32328 1.07640 1.44197 0.86612 0.83678 0.78023 0.79381 1.20341 1.21254 1.20272 1.21881 0.94018 0.98509 0.98892 1.21386 0.97139 0.96237 0.99693 0.93181 0.93109 0.93274 0.91981 0.91855 0.93078 0.92738 0.93776 0.94214 0.90740 0.95142 0.95315 0.89864 0.77055 0.92448 0.92856 0.93171 0.93414 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.32 16 2 C -0.13 -1.70 5.75 -26.73 -0.15 -1.85 16 3 C -0.11 -1.63 4.51 -26.73 -0.12 -1.75 16 4 C -0.09 -1.62 1.84 -91.33 -0.17 -1.79 16 5 H 0.10 2.08 5.71 -51.93 -0.30 1.79 16 6 C -0.10 -1.76 4.63 -29.70 -0.14 -1.90 16 7 C -0.11 -2.38 5.18 -29.60 -0.15 -2.54 16 8 C -0.12 -2.80 4.61 -27.34 -0.13 -2.92 16 9 C 0.25 6.19 0.65 -92.47 -0.06 6.13 16 10 O -0.59 -14.79 8.91 -35.23 -0.31 -15.10 16 11 C -0.54 -14.50 8.06 -34.44 -0.28 -14.78 16 12 H 0.05 1.48 7.67 -52.49 -0.40 1.08 16 13 C 0.07 1.77 4.91 -17.82 -0.09 1.69 16 14 N -0.90 -23.90 9.82 55.43 0.54 -23.36 16 15 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 C -0.10 -2.07 4.90 -25.62 -0.13 -2.20 16 20 C -0.11 -1.97 4.89 -27.43 -0.13 -2.11 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.86 6.29 -51.93 -0.33 0.53 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.78 7.97 -51.93 -0.41 0.36 16 28 H 0.04 0.72 5.98 -51.93 -0.31 0.41 16 29 H 0.04 0.69 7.47 -51.93 -0.39 0.31 16 30 H 0.07 1.66 5.78 -51.93 -0.30 1.36 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.03 0.64 6.97 -51.93 -0.36 0.28 16 33 H 0.08 2.18 5.92 -51.93 -0.31 1.87 16 34 H 0.38 9.91 6.13 45.56 0.28 10.19 16 35 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.05 1.14 7.92 -51.93 -0.41 0.72 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.87 6.63 -51.93 -0.34 0.52 16 39 H 0.04 0.69 7.59 -51.93 -0.39 0.30 16 LS Contribution 282.77 15.07 4.26 4.26 Total: -1.00 -26.14 282.77 -7.78 -33.92 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.07 Total: 9.71 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -1.18 Total: -25.33 kcal Atomic # 7 Polarization: -23.90 SS G_CDS: 0.54 Total: -23.36 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.31 Total: -15.10 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -26.14 -7.78 -33.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.845 kcal (2) G-P(sol) polarization free energy of solvation -26.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds