Wall clock time and date at job start Mon Mar 30 2020 03:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47101 * 2 1 4 4 C 1.52993 * 109.47264 * 179.97438 * 3 2 1 5 5 H 1.09006 * 109.62643 * 54.61778 * 4 3 2 6 6 C 1.54058 * 109.83379 * 294.09772 * 4 3 2 7 7 C 1.45542 * 112.51040 * 160.14930 * 6 4 3 8 8 C 1.54235 * 112.32952 * 61.98309 * 7 6 4 9 9 C 1.50481 * 108.52359 * 280.06081 * 8 7 6 10 10 O 1.42896 * 108.87340 * 333.37248 * 9 8 7 11 11 C 1.50704 * 108.87580 * 214.92786 * 9 8 7 12 12 H 1.07997 * 119.99934 * 239.99520 * 11 9 8 13 13 C 1.37877 * 119.99732 * 60.00200 * 11 9 8 14 14 N 1.31510 * 120.00243 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99916 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46940 * 59.99695 * 15 13 11 17 17 H 1.48501 * 109.47190 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46707 * 299.99677 * 15 13 11 19 19 C 1.54059 * 112.49724 * 94.15272 * 9 8 7 20 20 C 1.50479 * 109.62990 * 174.99724 * 4 3 2 21 21 H 1.09001 * 109.47122 * 300.00038 * 1 2 3 22 22 H 1.09004 * 109.47247 * 60.00003 * 1 2 3 23 23 H 1.09003 * 109.47091 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47122 * 239.99962 * 2 1 3 25 25 H 1.08994 * 109.47261 * 119.99853 * 2 1 3 26 26 H 1.09004 * 109.46793 * 59.99641 * 3 2 1 27 27 H 1.09004 * 109.47068 * 300.00107 * 3 2 1 28 28 H 1.08996 * 108.76698 * 39.41450 * 6 4 3 29 29 H 1.09002 * 108.91686 * 280.98703 * 6 4 3 30 30 H 1.09002 * 108.89568 * 301.27699 * 7 6 4 31 31 H 1.09003 * 108.89439 * 182.68883 * 7 6 4 32 32 H 1.09000 * 109.63044 * 39.76897 * 8 7 6 33 33 H 1.09000 * 109.63070 * 160.15479 * 8 7 6 34 34 H 0.96699 * 114.00251 * 299.99903 * 10 9 8 35 35 H 0.97002 * 120.00056 * 179.97438 * 14 13 11 36 36 H 1.09006 * 108.81828 * 79.14290 * 19 9 8 37 37 H 1.09000 * 108.81554 * 197.53598 * 19 9 8 38 38 H 1.09002 * 108.87504 * 93.28145 * 20 4 3 39 39 H 1.08997 * 108.79566 * 334.78574 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9365 0.8480 -0.8362 6 6 4.0921 0.8511 1.3238 7 6 5.4709 0.3955 1.2249 8 6 6.4453 1.5444 0.8943 9 6 6.3780 1.8180 -0.5839 10 8 5.9765 0.6233 -1.2573 11 6 7.7492 2.2112 -1.0700 12 1 7.9037 3.1777 -1.5265 13 6 8.8064 1.3370 -0.9319 14 7 8.6184 0.1603 -0.3756 15 14 10.5060 1.8241 -1.5350 16 1 10.9542 3.0453 -0.8187 17 1 11.4607 0.7177 -1.2714 18 1 10.4541 2.0969 -2.9939 19 6 5.3846 2.9434 -0.9304 20 6 4.0755 2.8545 -0.1229 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6767 1.9564 -0.8900 28 1 3.4610 0.0078 1.6042 29 1 4.0268 1.6123 2.1013 30 1 5.5376 -0.3602 0.4422 31 1 5.7633 -0.0533 2.1742 32 1 6.1569 2.4393 1.4457 33 1 7.4594 1.2553 1.1702 34 1 6.5777 -0.1227 -1.1269 35 1 9.3621 -0.4548 -0.2789 36 1 5.8576 3.9045 -0.7283 37 1 5.1453 2.8865 -1.9923 38 1 4.2491 3.2556 0.8756 39 1 3.3144 3.4580 -0.6175 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:15 Heat of formation + Delta-G solvation = -98.336590 kcal Electronic energy + Delta-G solvation = -17111.942522 eV Core-core repulsion = 14631.535031 eV Total energy + Delta-G solvation = -2480.407490 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.51074 -37.31084 -34.61327 -33.97597 -33.18684 -31.51469 -28.16531 -26.77984 -25.00837 -23.55104 -21.95731 -20.69109 -19.84102 -18.83518 -17.16896 -16.53868 -16.08987 -15.78210 -15.41212 -14.81908 -14.63181 -14.42873 -13.75277 -13.68739 -13.45186 -13.10357 -12.98198 -12.81231 -12.54552 -12.42147 -12.22345 -12.05014 -11.94278 -11.63679 -11.53595 -11.27570 -11.07470 -10.85418 -10.76834 -10.63224 -10.39005 -9.79708 -8.10820 -6.30016 1.40471 1.41505 1.48750 2.41068 3.09870 3.92476 3.96310 4.12610 4.23701 4.31292 4.38577 4.59652 4.63802 4.65319 4.77704 4.81239 4.87298 4.98369 5.01388 5.06632 5.12353 5.20743 5.28499 5.30225 5.40758 5.44230 5.47627 5.53638 5.63918 5.67389 5.71644 5.76635 5.84149 6.07099 6.18107 6.32771 6.78582 7.40954 7.66467 8.87997 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.050685 B = 0.007243 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.301878 B = 3864.868962 C = 4002.638616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.088 4.088 5 H 0.071 0.929 6 C -0.097 4.097 7 C -0.105 4.105 8 C -0.113 4.113 9 C 0.245 3.755 10 O -0.589 6.589 11 C -0.567 4.567 12 H 0.044 0.956 13 C 0.028 3.972 14 N -0.907 5.907 15 Si 0.951 3.049 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.278 1.278 19 C -0.095 4.095 20 C -0.103 4.103 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.051 0.949 34 H 0.369 0.631 35 H 0.267 0.733 36 H 0.051 0.949 37 H 0.038 0.962 38 H 0.054 0.946 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.171 0.611 2.927 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.141 4.141 4 C -0.106 4.106 5 H 0.089 0.911 6 C -0.134 4.134 7 C -0.142 4.142 8 C -0.151 4.151 9 C 0.206 3.794 10 O -0.399 6.399 11 C -0.605 4.605 12 H 0.062 0.938 13 C -0.171 4.171 14 N -0.548 5.548 15 Si 0.778 3.222 16 H -0.200 1.200 17 H -0.206 1.206 18 H -0.204 1.204 19 C -0.132 4.132 20 C -0.140 4.140 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.219 0.781 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.576 0.838 2.792 11.937 hybrid contribution 1.980 -0.125 -0.232 1.997 sum -9.596 0.713 2.560 9.957 Atomic orbital electron populations 1.21749 0.94814 1.01857 1.01985 1.21577 0.96433 0.96788 1.01580 1.21633 0.93846 0.96974 1.01683 1.20957 0.94927 0.96307 0.98446 0.91114 1.20424 0.95709 1.00230 0.97011 1.20239 0.95434 0.99045 0.99523 1.21720 0.98994 0.96341 0.98047 1.18440 0.89942 0.82346 0.88694 1.86131 1.53601 1.23626 1.76528 1.22271 0.96049 1.02053 1.40158 0.93775 1.25592 1.01967 0.95099 0.94464 1.69697 1.33039 1.07970 1.44078 0.85728 0.80005 0.77863 0.78636 1.20026 1.20567 1.20372 1.21852 0.95269 0.97251 0.98861 1.21360 0.95775 0.97276 0.99580 0.92216 0.92690 0.92356 0.93279 0.92026 0.91567 0.92215 0.91841 0.93091 0.92702 0.94643 0.94667 0.93080 0.78089 0.92377 0.93008 0.94320 0.92761 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.91 71.98 0.71 -2.13 16 2 C -0.13 -3.10 5.75 30.60 0.18 -2.92 16 3 C -0.10 -2.76 4.51 30.59 0.14 -2.62 16 4 C -0.09 -2.98 1.84 -11.25 -0.02 -3.01 16 5 H 0.07 2.88 5.71 -2.38 -0.01 2.87 16 6 C -0.10 -3.29 4.63 28.67 0.13 -3.15 16 7 C -0.10 -4.32 5.18 28.73 0.15 -4.17 16 8 C -0.11 -5.31 4.61 30.20 0.14 -5.17 16 9 C 0.24 12.14 0.65 -12.00 -0.01 12.13 16 10 O -0.59 -30.26 8.91 -148.98 -1.33 -31.58 16 11 C -0.57 -31.26 8.06 25.60 0.21 -31.05 16 12 H 0.04 2.45 7.67 -2.91 -0.02 2.43 16 13 C 0.03 1.53 4.91 84.66 0.42 1.94 16 14 N -0.91 -49.05 9.82 21.45 0.21 -48.84 16 15 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 C -0.09 -4.10 4.90 31.31 0.15 -3.95 16 20 C -0.10 -3.60 4.89 30.14 0.15 -3.45 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 1.52 6.29 -2.39 -0.02 1.50 16 26 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.06 1.53 7.97 -2.39 -0.02 1.51 16 28 H 0.06 1.93 5.98 -2.39 -0.01 1.91 16 29 H 0.05 1.64 7.47 -2.39 -0.02 1.62 16 30 H 0.05 2.47 5.78 -2.39 -0.01 2.46 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.03 1.56 6.97 -2.39 -0.02 1.54 16 33 H 0.05 2.72 5.92 -2.39 -0.01 2.70 16 34 H 0.37 19.95 6.13 -74.06 -0.45 19.50 16 35 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 36 H 0.05 2.21 7.92 -2.38 -0.02 2.19 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.84 6.63 -2.39 -0.02 1.82 16 39 H 0.06 1.97 7.59 -2.39 -0.02 1.95 16 Total: -1.00 -55.65 282.77 3.81 -51.84 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: 0.56 Total: 30.90 kcal Atomic # 6 Polarization: -49.89 SS G_CDS: 2.34 Total: -47.54 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.21 Total: -48.84 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.33 Total: -31.58 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -55.65 3.81 -51.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.500 kcal (2) G-P(sol) polarization free energy of solvation -55.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds