Wall clock time and date at job start Mon Mar 30 2020 02:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46503 * 119.99964 * 2 1 4 4 C 1.50707 * 109.46919 * 269.99917 * 3 2 1 5 5 H 1.07998 * 119.99625 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99843 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99582 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00175 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46779 * 90.00322 * 8 6 4 10 10 H 1.48507 * 109.47077 * 210.00097 * 8 6 4 11 11 H 1.48495 * 109.47229 * 330.00301 * 8 6 4 12 12 C 1.34771 * 120.00276 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00650 * 179.97438 * 12 2 1 14 14 C 1.50709 * 119.99835 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.46995 * 180.02562 * 14 12 2 16 16 H 1.09005 * 109.47475 * 304.99876 * 15 14 12 17 17 N 1.46901 * 109.47494 * 65.00224 * 15 14 12 18 18 C 1.53003 * 109.46999 * 185.00321 * 15 14 12 19 19 C 1.53001 * 117.51964 * 111.28362 * 18 15 14 20 20 C 1.52999 * 60.00190 * 107.47982 * 19 18 15 21 21 H 1.09005 * 109.47442 * 270.00556 * 1 2 3 22 22 H 1.09002 * 109.47237 * 30.00126 * 1 2 3 23 23 H 1.08996 * 109.47249 * 150.00210 * 1 2 3 24 24 H 1.09004 * 109.47112 * 29.99655 * 3 2 1 25 25 H 1.08996 * 109.47271 * 149.99864 * 3 2 1 26 26 H 0.97005 * 119.99556 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46597 * 59.99865 * 14 12 2 28 28 H 1.08999 * 109.47197 * 299.99980 * 14 12 2 29 29 H 1.00902 * 110.99851 * 296.04603 * 17 15 14 30 30 H 1.00898 * 110.99992 * 59.99518 * 17 15 14 31 31 H 1.09002 * 115.54973 * 325.58146 * 18 15 14 32 32 H 1.09001 * 117.49733 * 214.97413 * 19 18 15 33 33 H 1.08995 * 117.49577 * 359.97438 * 19 18 15 34 34 H 1.09004 * 117.50150 * 252.51496 * 20 19 18 35 35 H 1.09004 * 117.49681 * 107.48417 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0981 1.0957 -2.2417 6 6 3.1268 2.8774 -1.6728 7 7 3.3456 3.2572 -2.9128 8 14 3.7338 3.9287 -0.2531 9 1 5.1069 3.5069 0.1235 10 1 3.7497 5.3554 -0.6650 11 1 2.8273 3.7597 0.9109 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3853 -2.4723 0.0017 15 6 2.3796 -3.6352 0.0027 16 1 3.0638 -3.5291 -0.8392 17 7 3.1427 -3.6259 1.2580 18 6 1.6188 -4.9568 -0.1219 19 6 1.7772 -5.7435 -1.4245 20 6 2.4417 -6.2465 -0.1415 21 1 -0.3634 0.0001 1.0277 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6083 2.0284 0.5138 25 1 3.1498 1.1385 0.5138 26 1 3.8224 4.0832 -3.0901 27 1 0.7584 -2.5306 -0.8880 28 1 0.7590 -2.5295 0.8919 29 1 3.7044 -2.7911 1.3335 30 1 2.5305 -3.7230 2.0540 31 1 0.6464 -4.9876 0.3696 32 1 0.9089 -6.2919 -1.7900 33 1 2.4231 -5.3194 -2.1932 34 1 3.5251 -6.1534 -0.0659 35 1 2.0106 -7.1258 0.3372 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129752689.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:50 Heat of formation + Delta-G solvation = -15.175817 kcal Electronic energy + Delta-G solvation = -15838.740369 eV Core-core repulsion = 13258.398657 eV Total energy + Delta-G solvation = -2580.341712 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 226.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.49292 -37.65540 -35.08157 -33.64522 -32.55813 -29.64781 -27.98682 -25.94260 -24.22774 -22.28962 -21.97910 -20.10416 -18.45425 -16.99156 -16.56121 -15.87018 -15.34550 -15.23958 -14.93386 -14.03471 -13.98606 -13.46663 -12.85110 -12.74227 -12.41878 -12.24189 -12.04958 -11.57587 -11.48038 -11.44524 -10.95468 -10.83497 -10.55475 -10.28111 -10.17895 -10.12998 -9.57433 -9.08307 -8.61560 -8.45394 -7.75949 -6.11265 -4.10441 3.26436 3.27118 3.33064 3.34763 3.75417 3.84892 4.37136 4.64686 4.81209 4.91302 5.04021 5.20842 5.22826 5.29166 5.49133 5.50142 5.63061 5.67707 5.78437 5.83746 5.90573 6.03201 6.12033 6.20114 6.37546 6.65201 6.89529 7.26406 7.41823 7.57716 7.76475 8.19065 8.43888 8.88113 8.93816 9.48721 11.02160 Molecular weight = 226.14amu Principal moments of inertia in cm(-1) A = 0.042400 B = 0.005995 C = 0.005969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.216429 B = 4669.323159 C = 4690.023897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.597 5.597 3 C 0.214 3.786 4 C -0.530 4.530 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.878 3.122 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.504 3.496 13 O -0.542 6.542 14 C -0.173 4.173 15 C 0.139 3.861 16 H 0.087 0.913 17 N -0.841 5.841 18 C -0.149 4.149 19 C -0.181 4.181 20 C -0.160 4.160 21 H 0.044 0.956 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.037 0.963 26 H 0.265 0.735 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.358 0.642 30 H 0.328 0.672 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 -13.339 7.471 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.328 5.328 3 C 0.094 3.906 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.705 3.295 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.292 3.708 13 O -0.420 6.420 14 C -0.215 4.215 15 C 0.026 3.974 16 H 0.105 0.895 17 N -0.372 5.372 18 C -0.168 4.168 19 C -0.219 4.219 20 C -0.198 4.198 21 H 0.063 0.937 22 H 0.095 0.905 23 H 0.079 0.921 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.175 0.825 30 H 0.140 0.860 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.236 -13.791 7.079 16.709 hybrid contribution -0.485 1.641 0.701 1.849 sum -6.720 -12.150 7.780 15.916 Atomic orbital electron populations 1.21669 0.80961 1.03089 1.00400 1.47874 1.06304 1.07251 1.71419 1.19674 0.92436 0.80099 0.98412 1.21315 1.37091 1.07205 0.91212 0.90847 1.24866 0.95198 0.97343 0.95613 1.69902 1.41408 1.23569 1.18670 0.86829 0.80118 0.79757 0.82839 1.19858 1.21022 1.19144 1.20431 0.88143 0.85201 0.77064 1.90625 1.13853 1.87140 1.50410 1.22568 1.00491 0.94526 1.03956 1.20709 0.92589 0.89456 0.94628 0.89457 1.58922 1.27515 1.47815 1.02993 1.22247 1.00067 0.92662 1.01843 1.23001 1.03254 1.04127 0.91520 1.22772 1.00085 0.96488 1.00414 0.93708 0.90540 0.92066 0.95307 0.94542 0.92525 0.88868 0.89797 0.82470 0.86040 0.88339 0.89074 0.88698 0.88216 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.24 59.84 0.61 1.87 16 2 N -0.60 -12.15 2.86 -182.95 -0.52 -12.67 16 3 C 0.21 5.25 4.23 -5.19 -0.02 5.22 16 4 C -0.53 -15.30 9.94 -34.44 -0.34 -15.65 16 5 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 8 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 12 C 0.50 9.94 7.48 -10.98 -0.08 9.86 16 13 O -0.54 -12.74 13.73 5.56 0.08 -12.66 16 14 C -0.17 -2.44 3.89 -27.88 -0.11 -2.55 16 15 C 0.14 1.94 2.62 -67.71 -0.18 1.76 16 16 H 0.09 1.46 7.71 -51.93 -0.40 1.06 16 17 N -0.84 -11.85 9.08 -4.66 -0.04 -11.89 16 18 C -0.15 -1.69 5.33 -90.61 -0.48 -2.17 16 19 C -0.18 -1.92 10.18 -26.73 -0.27 -2.19 16 20 C -0.16 -1.72 10.13 -26.73 -0.27 -1.99 16 21 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 23 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 24 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 25 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.09 1.22 7.40 -51.93 -0.38 0.84 16 28 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 29 H 0.36 5.91 6.89 -39.29 -0.27 5.64 16 30 H 0.33 3.96 9.00 -39.29 -0.35 3.60 16 31 H 0.10 0.98 8.11 -51.93 -0.42 0.56 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 34 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 290.04 15.07 4.37 4.37 Total: -1.00 -32.75 290.04 -6.69 -39.43 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.43 Total: 7.31 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -1.24 Total: -3.82 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.21 Total: -51.58 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.66 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.75 -6.69 -39.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129752689.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.257 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds