Wall clock time and date at job start Mon Mar 30 2020 03:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47023 * 2 1 4 4 C 1.53000 * 109.46837 * 119.99924 * 2 1 3 5 5 C 1.53008 * 109.46798 * 174.26317 * 4 2 1 6 6 H 1.09006 * 109.47186 * 54.92754 * 5 4 2 7 7 C 1.52999 * 109.46917 * 294.92887 * 5 4 2 8 8 C 1.52998 * 109.46802 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47272 * 59.99820 * 8 7 5 10 10 C 1.52999 * 109.47354 * 299.99842 * 9 8 7 11 11 O 1.42898 * 109.47033 * 300.00108 * 10 9 8 12 12 C 1.50699 * 109.47438 * 179.97438 * 10 9 8 13 13 H 1.08002 * 120.00017 * 241.31790 * 12 10 9 14 14 C 1.37880 * 119.99933 * 61.31240 * 12 10 9 15 15 N 1.31509 * 119.99794 * 3.81419 * 14 12 10 16 16 Si 1.86792 * 119.99797 * 183.81336 * 14 12 10 17 17 H 1.48504 * 109.47280 * 84.99462 * 16 14 12 18 18 H 1.48501 * 109.47350 * 324.99292 * 16 14 12 19 19 H 1.48503 * 109.47018 * 204.99532 * 16 14 12 20 20 C 1.52998 * 109.47155 * 174.92708 * 5 4 2 21 21 H 1.09003 * 109.47129 * 184.82925 * 1 2 3 22 22 H 1.08997 * 109.47036 * 304.83035 * 1 2 3 23 23 H 1.09003 * 109.47193 * 64.82924 * 1 2 3 24 24 H 1.08996 * 109.47038 * 239.99938 * 2 1 3 25 25 H 1.08997 * 109.47203 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46928 * 299.99955 * 3 2 1 27 27 H 1.09003 * 109.47027 * 59.99755 * 3 2 1 28 28 H 1.08991 * 109.47440 * 54.26172 * 4 2 1 29 29 H 1.08993 * 109.47099 * 294.25862 * 4 2 1 30 30 H 1.08997 * 109.46889 * 299.99945 * 7 5 4 31 31 H 1.09002 * 109.47544 * 60.00164 * 7 5 4 32 32 H 1.09006 * 109.47171 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47294 * 299.99623 * 8 7 5 34 34 H 1.09003 * 109.47265 * 179.97438 * 9 8 7 35 35 H 1.09006 * 109.47036 * 59.99886 * 9 8 7 36 36 H 0.96700 * 114.00142 * 299.99977 * 11 10 9 37 37 H 0.97004 * 119.99926 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47122 * 59.99767 * 20 5 4 39 39 H 1.09006 * 109.46986 * 300.00137 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5632 -0.8473 1.1792 6 1 4.0033 0.1396 1.0358 7 6 3.9467 -1.7520 0.0065 8 6 5.4698 -1.8786 -0.0631 9 6 5.9913 -2.4855 1.2410 10 6 5.6079 -1.5807 2.4137 11 8 6.1853 -0.2872 2.2260 12 6 6.1210 -2.1788 3.6983 13 1 5.4280 -2.4616 4.4769 14 6 7.4751 -2.3650 3.8795 15 7 8.3239 -1.9523 2.9636 16 14 8.1038 -3.2033 5.4258 17 1 8.0706 -4.6762 5.2388 18 1 7.2419 -2.8309 6.5762 19 1 9.4989 -2.7694 5.6917 20 6 4.0853 -1.4539 2.4833 21 1 -0.3633 -1.0240 0.0865 22 1 -0.3633 0.5869 0.8435 23 1 -0.3634 0.4371 -0.9301 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.5952 -1.7149 1.3022 29 1 1.7630 -0.1515 2.1362 30 1 3.5066 -2.7389 0.1500 31 1 3.5748 -1.3199 -0.9226 32 1 5.7431 -2.5235 -0.8983 33 1 5.9103 -0.8919 -0.2063 34 1 7.0764 -2.5761 1.1912 35 1 5.5509 -3.4722 1.3842 36 1 7.1508 -0.2913 2.1726 37 1 9.2766 -2.0830 3.0913 38 1 3.6452 -2.4407 2.6267 39 1 3.8120 -0.8093 3.3188 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230794658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:37 Heat of formation + Delta-G solvation = -97.871234 kcal Electronic energy + Delta-G solvation = -16876.210108 eV Core-core repulsion = 14395.822797 eV Total energy + Delta-G solvation = -2480.387311 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.60160 -36.15699 -33.51727 -31.94055 -30.41170 -28.91772 -26.99625 -25.35498 -24.89231 -21.16828 -20.87716 -19.11851 -18.50660 -16.70910 -15.03911 -14.88072 -14.54106 -14.28020 -13.82009 -13.20977 -13.05834 -12.88346 -12.62096 -12.08925 -11.85652 -11.51274 -11.37567 -11.17405 -11.08701 -10.95424 -10.74210 -10.64526 -10.41166 -10.33690 -10.15557 -9.96631 -9.71282 -9.48569 -9.38891 -8.71477 -8.44320 -7.83200 -6.09779 -4.18797 3.26674 3.33323 3.36947 4.37157 5.04358 5.13205 5.15471 5.18753 5.57879 5.69767 5.77027 5.77733 5.88199 5.91157 6.00834 6.14903 6.19916 6.28006 6.30683 6.36314 6.45014 6.48201 6.55988 6.62111 6.67133 6.74436 6.78516 6.93966 7.01153 7.20593 7.27476 7.45016 7.68777 7.81130 8.07906 8.31061 8.83744 9.49268 9.74689 10.93942 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046460 B = 0.006947 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.521444 B = 4029.590340 C = 4194.345577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.110 4.110 5 C -0.084 4.084 6 H 0.076 0.924 7 C -0.107 4.107 8 C -0.115 4.115 9 C -0.134 4.134 10 C 0.253 3.747 11 O -0.592 6.592 12 C -0.534 4.534 13 H 0.057 0.943 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.275 1.275 19 H -0.286 1.286 20 C -0.088 4.088 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.379 0.621 37 H 0.266 0.734 38 H 0.052 0.948 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.418 2.064 -5.832 11.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.147 4.147 5 C -0.102 4.102 6 H 0.095 0.905 7 C -0.144 4.144 8 C -0.153 4.153 9 C -0.172 4.172 10 C 0.214 3.786 11 O -0.401 6.401 12 C -0.572 4.572 13 H 0.075 0.925 14 C -0.132 4.132 15 N -0.541 5.541 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.199 1.199 19 H -0.212 1.212 20 C -0.126 4.126 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.230 0.770 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.861 2.251 -5.848 11.683 hybrid contribution 1.023 -0.798 0.855 1.554 sum -8.837 1.453 -4.993 10.254 Atomic orbital electron populations 1.21856 0.96105 1.01292 1.01075 1.21172 0.94730 0.96532 0.99309 1.21877 1.01929 0.95873 1.00802 1.21731 0.96677 0.99517 0.96808 1.21160 0.93121 1.00081 0.95871 0.90536 1.21568 0.96774 0.98811 0.97256 1.21517 0.94810 1.00660 0.98315 1.22126 1.02872 0.98217 0.93996 1.18524 0.87927 0.80846 0.91315 1.86073 1.26502 1.31619 1.95942 1.21840 0.92261 1.40754 1.02342 0.92494 1.24983 0.96813 0.94850 0.96571 1.69535 1.02709 1.47527 1.34357 0.86547 0.77950 0.79719 0.83379 1.20586 1.19948 1.21191 1.21475 0.96766 0.99013 0.95357 0.93008 0.93011 0.93312 0.91168 0.91860 0.93567 0.93031 0.92685 0.92502 0.93252 0.93502 0.94442 0.92343 0.89846 0.94274 0.77018 0.92428 0.92887 0.93172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.19 37.16 0.34 -1.28 16 2 C -0.10 -1.29 2.79 -90.61 -0.25 -1.55 16 3 C -0.15 -1.91 8.97 37.16 0.33 -1.58 16 4 C -0.11 -1.66 4.14 -26.73 -0.11 -1.78 16 5 C -0.08 -1.54 1.92 -90.62 -0.17 -1.71 16 6 H 0.08 1.52 5.91 -51.93 -0.31 1.22 16 7 C -0.11 -1.88 4.97 -26.73 -0.13 -2.02 16 8 C -0.12 -2.31 5.78 -26.73 -0.15 -2.46 16 9 C -0.13 -3.15 4.71 -26.73 -0.13 -3.28 16 10 C 0.25 6.32 0.66 -91.80 -0.06 6.26 16 11 O -0.59 -15.49 11.61 -35.23 -0.41 -15.90 16 12 C -0.53 -14.63 8.24 -34.44 -0.28 -14.91 16 13 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 14 C 0.07 1.85 5.21 -17.82 -0.09 1.76 16 15 N -0.90 -24.42 9.73 55.43 0.54 -23.88 16 16 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.09 -1.92 4.16 -26.76 -0.11 -2.04 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.93 6.32 -51.93 -0.33 0.60 16 25 H 0.06 0.91 6.49 -51.93 -0.34 0.57 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.74 6.45 -51.93 -0.33 0.40 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 34 H 0.08 2.16 6.33 -51.93 -0.33 1.83 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.38 10.26 6.91 45.56 0.31 10.57 16 37 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 292.78 15.07 4.41 4.41 Total: -1.00 -26.91 292.78 -7.64 -34.55 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.33 Total: 9.35 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -0.82 Total: -24.58 kcal Atomic # 7 Polarization: -24.42 SS G_CDS: 0.54 Total: -23.88 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.41 Total: -15.90 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.91 -7.64 -34.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230794658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.319 kcal (2) G-P(sol) polarization free energy of solvation -26.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds