Wall clock time and date at job start Mon Mar 30 2020 03:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47023 * 2 1 4 4 C 1.53000 * 109.46837 * 119.99924 * 2 1 3 5 5 C 1.53008 * 109.46798 * 174.26317 * 4 2 1 6 6 H 1.09006 * 109.47186 * 54.92754 * 5 4 2 7 7 C 1.52999 * 109.46917 * 294.92887 * 5 4 2 8 8 C 1.52998 * 109.46802 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47272 * 59.99820 * 8 7 5 10 10 C 1.52999 * 109.47354 * 299.99842 * 9 8 7 11 11 O 1.42898 * 109.47033 * 300.00108 * 10 9 8 12 12 C 1.50699 * 109.47438 * 179.97438 * 10 9 8 13 13 H 1.08002 * 120.00017 * 241.31790 * 12 10 9 14 14 C 1.37880 * 119.99933 * 61.31240 * 12 10 9 15 15 N 1.31509 * 119.99794 * 3.81419 * 14 12 10 16 16 Si 1.86792 * 119.99797 * 183.81336 * 14 12 10 17 17 H 1.48504 * 109.47280 * 84.99462 * 16 14 12 18 18 H 1.48501 * 109.47350 * 324.99292 * 16 14 12 19 19 H 1.48503 * 109.47018 * 204.99532 * 16 14 12 20 20 C 1.52998 * 109.47155 * 174.92708 * 5 4 2 21 21 H 1.09003 * 109.47129 * 184.82925 * 1 2 3 22 22 H 1.08997 * 109.47036 * 304.83035 * 1 2 3 23 23 H 1.09003 * 109.47193 * 64.82924 * 1 2 3 24 24 H 1.08996 * 109.47038 * 239.99938 * 2 1 3 25 25 H 1.08997 * 109.47203 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46928 * 299.99955 * 3 2 1 27 27 H 1.09003 * 109.47027 * 59.99755 * 3 2 1 28 28 H 1.08991 * 109.47440 * 54.26172 * 4 2 1 29 29 H 1.08993 * 109.47099 * 294.25862 * 4 2 1 30 30 H 1.08997 * 109.46889 * 299.99945 * 7 5 4 31 31 H 1.09002 * 109.47544 * 60.00164 * 7 5 4 32 32 H 1.09006 * 109.47171 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.47294 * 299.99623 * 8 7 5 34 34 H 1.09003 * 109.47265 * 179.97438 * 9 8 7 35 35 H 1.09006 * 109.47036 * 59.99886 * 9 8 7 36 36 H 0.96700 * 114.00142 * 299.99977 * 11 10 9 37 37 H 0.97004 * 119.99926 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47122 * 59.99767 * 20 5 4 39 39 H 1.09006 * 109.46986 * 300.00137 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5632 -0.8473 1.1792 6 1 4.0033 0.1396 1.0358 7 6 3.9467 -1.7520 0.0065 8 6 5.4698 -1.8786 -0.0631 9 6 5.9913 -2.4855 1.2410 10 6 5.6079 -1.5807 2.4137 11 8 6.1853 -0.2872 2.2260 12 6 6.1210 -2.1788 3.6983 13 1 5.4280 -2.4616 4.4769 14 6 7.4751 -2.3650 3.8795 15 7 8.3239 -1.9523 2.9636 16 14 8.1038 -3.2033 5.4258 17 1 8.0706 -4.6762 5.2388 18 1 7.2419 -2.8309 6.5762 19 1 9.4989 -2.7694 5.6917 20 6 4.0853 -1.4539 2.4833 21 1 -0.3633 -1.0240 0.0865 22 1 -0.3633 0.5869 0.8435 23 1 -0.3634 0.4371 -0.9301 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.5952 -1.7149 1.3022 29 1 1.7630 -0.1515 2.1362 30 1 3.5066 -2.7389 0.1500 31 1 3.5748 -1.3199 -0.9226 32 1 5.7431 -2.5235 -0.8983 33 1 5.9103 -0.8919 -0.2063 34 1 7.0764 -2.5761 1.1912 35 1 5.5509 -3.4722 1.3842 36 1 7.1508 -0.2913 2.1726 37 1 9.2766 -2.0830 3.0913 38 1 3.6452 -2.4407 2.6267 39 1 3.8120 -0.8093 3.3188 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230794658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:37 Heat of formation + Delta-G solvation = -112.590785 kcal Electronic energy + Delta-G solvation = -16876.848396 eV Core-core repulsion = 14395.822797 eV Total energy + Delta-G solvation = -2481.025599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23102 -37.61304 -35.14382 -34.03269 -31.95890 -30.74290 -27.94461 -26.91354 -26.68576 -22.83646 -22.36634 -20.46435 -20.18863 -18.71732 -16.97364 -16.40807 -16.06566 -15.83575 -15.29086 -14.89655 -14.44134 -14.22082 -14.16133 -13.52323 -13.35946 -13.01905 -12.96021 -12.82441 -12.64867 -12.50590 -12.31476 -12.16173 -12.00002 -11.87402 -11.72273 -11.48192 -11.36794 -11.02596 -10.95136 -10.55182 -10.37952 -9.83300 -8.15077 -6.32777 1.38815 1.40291 1.49453 2.39453 3.06207 3.89185 3.95322 4.07040 4.17663 4.31601 4.39163 4.46331 4.64388 4.70077 4.80960 4.82737 4.90141 4.93734 4.97873 4.98891 5.03534 5.08497 5.18025 5.22086 5.28349 5.34008 5.41842 5.49207 5.50563 5.59202 5.63065 5.68367 5.74363 5.92973 6.11349 6.27617 6.73937 7.38393 7.62028 8.85889 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.046460 B = 0.006947 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.521444 B = 4029.590340 C = 4194.345577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.104 4.104 5 C -0.076 4.076 6 H 0.058 0.942 7 C -0.101 4.101 8 C -0.111 4.111 9 C -0.127 4.127 10 C 0.240 3.760 11 O -0.597 6.597 12 C -0.565 4.565 13 H 0.047 0.953 14 C 0.028 3.972 15 N -0.914 5.914 16 Si 0.955 3.045 17 H -0.274 1.274 18 H -0.275 1.275 19 H -0.280 1.280 20 C -0.086 4.086 21 H 0.057 0.943 22 H 0.052 0.948 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.034 0.966 36 H 0.371 0.629 37 H 0.268 0.732 38 H 0.056 0.944 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.774 1.738 -6.648 12.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.141 4.141 5 C -0.095 4.095 6 H 0.077 0.923 7 C -0.138 4.138 8 C -0.148 4.148 9 C -0.165 4.165 10 C 0.201 3.799 11 O -0.406 6.406 12 C -0.603 4.603 13 H 0.065 0.935 14 C -0.172 4.172 15 N -0.555 5.555 16 Si 0.781 3.219 17 H -0.199 1.199 18 H -0.200 1.200 19 H -0.206 1.206 20 C -0.124 4.124 21 H 0.076 0.924 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.221 0.779 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.228 1.927 -6.670 13.201 hybrid contribution 1.483 -0.683 1.133 1.987 sum -9.744 1.244 -5.537 11.277 Atomic orbital electron populations 1.21815 0.94275 1.01913 1.01966 1.21147 0.96224 0.96059 0.97988 1.21872 1.00650 0.96255 1.01695 1.21662 0.94058 1.00374 0.98028 1.21055 0.95333 0.98884 0.94214 0.92325 1.21537 0.94830 0.99314 0.98120 1.21457 0.96561 0.99945 0.96859 1.21959 1.01076 0.97958 0.95556 1.18775 0.89723 0.80379 0.91070 1.86074 1.25828 1.32696 1.95993 1.22158 0.92802 1.41918 1.03405 0.93501 1.25666 0.96930 0.95266 0.99298 1.69629 1.02861 1.47527 1.35432 0.85625 0.77404 0.78906 0.79968 1.19933 1.20021 1.20558 1.21429 0.94742 0.99206 0.96980 0.92431 0.92880 0.91856 0.90818 0.93810 0.91753 0.93127 0.91828 0.92928 0.92349 0.90716 0.92449 0.93623 0.92706 0.94677 0.77936 0.92247 0.92520 0.94678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.19 71.98 0.66 -2.04 16 2 C -0.10 -2.24 2.79 -10.79 -0.03 -2.27 16 3 C -0.15 -3.53 8.97 71.98 0.65 -2.88 16 4 C -0.10 -2.95 4.14 30.60 0.13 -2.82 16 5 C -0.08 -2.73 1.92 -10.79 -0.02 -2.75 16 6 H 0.06 2.32 5.91 -2.38 -0.01 2.30 16 7 C -0.10 -3.34 4.97 30.59 0.15 -3.19 16 8 C -0.11 -4.32 5.78 30.59 0.18 -4.14 16 9 C -0.13 -6.04 4.71 30.59 0.14 -5.90 16 10 C 0.24 12.18 0.66 -11.56 -0.01 12.17 16 11 O -0.60 -32.10 11.61 -148.98 -1.73 -33.83 16 12 C -0.56 -31.57 8.24 25.60 0.21 -31.36 16 13 H 0.05 2.63 7.75 -2.91 -0.02 2.61 16 14 C 0.03 1.51 5.21 84.66 0.44 1.95 16 15 N -0.91 -50.30 9.73 21.45 0.21 -50.09 16 16 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 C -0.09 -3.76 4.16 30.58 0.13 -3.63 16 21 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.69 6.32 -2.39 -0.02 1.67 16 25 H 0.04 1.21 6.49 -2.39 -0.02 1.19 16 26 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 2.10 6.45 -2.39 -0.02 2.09 16 32 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.04 1.88 7.68 -2.39 -0.02 1.87 16 34 H 0.05 2.89 6.33 -2.39 -0.02 2.88 16 35 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.37 20.77 6.91 -74.06 -0.51 20.26 16 37 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -57.63 292.78 3.62 -54.01 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 0.49 Total: 31.29 kcal Atomic # 6 Polarization: -49.48 SS G_CDS: 2.63 Total: -46.85 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.21 Total: -50.09 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.73 Total: -33.83 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -57.63 3.62 -54.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230794658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.582 kcal (2) G-P(sol) polarization free energy of solvation -57.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds