Wall clock time and date at job start Mon Mar 30 2020 03:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47411 * 2 1 4 4 C 1.53004 * 109.47097 * 120.00297 * 2 1 3 5 5 C 1.53000 * 109.46967 * 174.37171 * 4 2 1 6 6 H 1.09003 * 109.47254 * 54.91870 * 5 4 2 7 7 C 1.53001 * 109.47004 * 174.91700 * 5 4 2 8 8 C 1.53001 * 109.47217 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46772 * 299.99828 * 8 7 5 10 10 C 1.53001 * 109.47109 * 60.00106 * 9 8 7 11 11 O 1.42896 * 109.46933 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47160 * 60.00028 * 10 9 8 13 13 H 1.07998 * 119.99874 * 238.96457 * 12 10 9 14 14 C 1.37879 * 120.00217 * 58.96803 * 12 10 9 15 15 N 1.31517 * 119.99983 * 6.97917 * 14 12 10 16 16 Si 1.86798 * 119.99893 * 186.98628 * 14 12 10 17 17 H 1.48503 * 109.47220 * 94.99370 * 16 14 12 18 18 H 1.48503 * 109.46869 * 214.98591 * 16 14 12 19 19 H 1.48492 * 109.47478 * 334.99083 * 16 14 12 20 20 C 1.52997 * 109.47272 * 294.91593 * 5 4 2 21 21 H 1.09000 * 109.46594 * 299.99687 * 1 2 3 22 22 H 1.08995 * 109.47145 * 59.99833 * 1 2 3 23 23 H 1.09007 * 109.47063 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47060 * 239.99734 * 2 1 3 25 25 H 1.08994 * 109.47569 * 185.83411 * 3 2 1 26 26 H 1.09000 * 109.47179 * 305.84029 * 3 2 1 27 27 H 1.09004 * 109.46609 * 65.83136 * 3 2 1 28 28 H 1.08995 * 109.47332 * 54.37194 * 4 2 1 29 29 H 1.09001 * 109.47432 * 294.36820 * 4 2 1 30 30 H 1.08995 * 109.47594 * 60.00141 * 7 5 4 31 31 H 1.09005 * 109.47111 * 299.99963 * 7 5 4 32 32 H 1.08998 * 109.47485 * 59.99438 * 8 7 5 33 33 H 1.08993 * 109.47558 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46991 * 179.97438 * 9 8 7 35 35 H 1.08995 * 109.47050 * 299.99580 * 9 8 7 36 36 H 0.96703 * 114.00227 * 299.99900 * 11 10 9 37 37 H 0.96995 * 119.99780 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.47460 * 299.99855 * 20 5 4 39 39 H 1.08995 * 109.47414 * 60.00182 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5635 -0.8450 1.1805 6 1 4.0021 0.1426 1.0380 7 6 4.0853 -1.4514 2.4847 8 6 5.6088 -1.5745 2.4162 9 6 5.9952 -2.4778 1.2432 10 6 5.4734 -1.8714 -0.0609 11 8 5.8338 -2.7153 -1.1563 12 6 6.0794 -0.5057 -0.2578 13 1 5.4409 0.3611 -0.3438 14 6 7.4490 -0.3628 -0.3281 15 7 8.2204 -1.4275 -0.3616 16 14 8.2088 1.3430 -0.3755 17 1 8.5921 1.7526 0.9995 18 1 9.4157 1.3233 -1.2405 19 1 7.2230 2.3090 -0.9231 20 6 3.9494 -1.7485 0.0077 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1250 1.4442 -0.1045 26 1 1.5939 1.9856 -0.8331 27 1 1.7645 1.9252 0.9376 28 1 1.5968 -1.7157 1.3010 29 1 1.7614 -0.1527 2.1364 30 1 3.6467 -2.4390 2.6273 31 1 3.8103 -0.8077 3.3203 32 1 6.0471 -0.5867 2.2738 33 1 5.9805 -2.0069 3.3451 34 1 7.0806 -2.5651 1.1942 35 1 5.5570 -3.4656 1.3856 36 1 6.7872 -2.8390 -1.2605 37 1 9.1838 -1.3269 -0.4114 38 1 3.5108 -2.7362 0.1502 39 1 3.5777 -1.3166 -0.9215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230794660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:40 Heat of formation + Delta-G solvation = -96.448552 kcal Electronic energy + Delta-G solvation = -17160.197680 eV Core-core repulsion = 14679.872062 eV Total energy + Delta-G solvation = -2480.325619 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.62114 -36.02208 -33.78498 -32.00244 -30.17752 -28.63973 -26.88299 -25.29330 -24.99469 -21.46374 -20.44470 -19.20067 -18.68402 -16.31421 -15.10666 -15.04066 -14.50900 -13.99507 -13.77643 -13.33912 -13.03793 -12.86492 -12.28183 -12.06234 -11.81354 -11.68534 -11.36952 -11.22037 -11.11271 -10.80452 -10.68504 -10.55886 -10.39207 -10.21065 -10.12754 -9.80215 -9.65502 -9.42961 -9.34552 -8.76527 -8.41849 -7.85214 -6.09727 -4.15159 3.25284 3.33613 3.36617 4.37490 5.11651 5.14165 5.23657 5.29722 5.61466 5.77029 5.79548 5.87107 5.96816 6.02703 6.10032 6.15804 6.25200 6.29809 6.41280 6.45443 6.52256 6.58571 6.63159 6.68184 6.76936 6.79612 6.85741 6.94126 7.02102 7.27871 7.41047 7.46448 7.64517 7.75339 8.07066 8.34896 8.85998 9.50142 9.72164 10.95335 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.009923 C = 0.008743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.472905 B = 2821.117576 C = 3201.902964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.078 4.078 6 H 0.082 0.918 7 C -0.107 4.107 8 C -0.103 4.103 9 C -0.133 4.133 10 C 0.248 3.752 11 O -0.599 6.599 12 C -0.519 4.519 13 H 0.059 0.941 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.087 4.087 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.083 0.917 35 H 0.021 0.979 36 H 0.381 0.619 37 H 0.265 0.735 38 H 0.036 0.964 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.013 2.060 3.596 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.205 4.205 4 C -0.145 4.145 5 C -0.097 4.097 6 H 0.100 0.900 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.171 4.171 10 C 0.208 3.792 11 O -0.409 6.409 12 C -0.557 4.557 13 H 0.078 0.922 14 C -0.133 4.133 15 N -0.541 5.541 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.124 4.124 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.040 0.960 36 H 0.232 0.768 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.480 1.990 3.512 10.304 hybrid contribution 1.174 0.942 0.141 1.512 sum -8.306 2.931 3.653 9.536 Atomic orbital electron populations 1.21848 0.96232 1.01122 1.01003 1.21168 0.94520 0.96622 0.99557 1.21872 1.02201 0.95776 1.00634 1.21712 0.96636 0.99443 0.96720 1.21100 0.92940 1.00751 0.94879 0.89960 1.21532 0.97070 0.99266 0.96567 1.21347 0.94283 1.01465 0.96933 1.22068 1.03255 0.95421 0.96390 1.18653 0.89275 0.88256 0.82988 1.86082 1.30156 1.71403 1.53248 1.21734 0.91517 0.93858 1.48617 0.92238 1.24969 0.97246 0.96708 0.94357 1.69556 1.04822 1.28301 1.51428 0.86615 0.78896 0.84816 0.77912 1.20706 1.21262 1.19829 1.21385 0.97053 0.97126 0.96860 0.93238 0.93235 0.93101 0.90608 0.91578 0.93506 0.93338 0.92788 0.92851 0.93507 0.93694 0.91156 0.94767 0.89822 0.95975 0.76836 0.92521 0.94475 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.19 37.16 0.34 -1.41 16 2 C -0.10 -1.46 2.79 -90.62 -0.25 -1.72 16 3 C -0.15 -2.14 8.82 37.16 0.33 -1.81 16 4 C -0.11 -1.65 4.14 -26.73 -0.11 -1.76 16 5 C -0.08 -1.46 1.84 -90.62 -0.17 -1.62 16 6 H 0.08 1.66 4.99 -51.93 -0.26 1.40 16 7 C -0.11 -1.94 5.20 -26.73 -0.14 -2.08 16 8 C -0.10 -2.14 5.70 -26.73 -0.15 -2.29 16 9 C -0.13 -3.15 4.85 -26.73 -0.13 -3.28 16 10 C 0.25 6.17 0.84 -91.75 -0.08 6.09 16 11 O -0.60 -16.19 12.96 -35.23 -0.46 -16.64 16 12 C -0.52 -13.62 6.27 -34.44 -0.22 -13.84 16 13 H 0.06 1.56 6.76 -52.49 -0.35 1.21 16 14 C 0.07 1.79 5.18 -17.82 -0.09 1.70 16 15 N -0.90 -24.18 9.76 55.43 0.54 -23.64 16 16 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.09 -1.88 4.11 -26.71 -0.11 -1.99 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 1.23 6.32 -51.93 -0.33 0.90 16 25 H 0.07 1.09 6.76 -51.93 -0.35 0.74 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.59 7.22 -51.93 -0.37 1.21 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 2.17 6.27 -51.93 -0.33 1.84 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.38 10.43 6.99 45.56 0.32 10.75 16 37 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.05 1.18 6.45 -51.93 -0.34 0.84 16 LS Contribution 290.30 15.07 4.37 4.37 Total: -1.00 -26.69 290.30 -7.56 -34.25 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -6.22 Total: 9.96 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -0.78 Total: -24.02 kcal Atomic # 7 Polarization: -24.18 SS G_CDS: 0.54 Total: -23.64 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.46 Total: -16.64 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.69 -7.56 -34.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230794660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.199 kcal (2) G-P(sol) polarization free energy of solvation -26.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds