Wall clock time and date at job start Mon Mar 30 2020 03:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47411 * 2 1 4 4 C 1.53004 * 109.47097 * 120.00297 * 2 1 3 5 5 C 1.53000 * 109.46967 * 174.37171 * 4 2 1 6 6 H 1.09003 * 109.47254 * 54.91870 * 5 4 2 7 7 C 1.53001 * 109.47004 * 174.91700 * 5 4 2 8 8 C 1.53001 * 109.47217 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46772 * 299.99828 * 8 7 5 10 10 C 1.53001 * 109.47109 * 60.00106 * 9 8 7 11 11 O 1.42896 * 109.46933 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47160 * 60.00028 * 10 9 8 13 13 H 1.07998 * 119.99874 * 238.96457 * 12 10 9 14 14 C 1.37879 * 120.00217 * 58.96803 * 12 10 9 15 15 N 1.31517 * 119.99983 * 6.97917 * 14 12 10 16 16 Si 1.86798 * 119.99893 * 186.98628 * 14 12 10 17 17 H 1.48503 * 109.47220 * 94.99370 * 16 14 12 18 18 H 1.48503 * 109.46869 * 214.98591 * 16 14 12 19 19 H 1.48492 * 109.47478 * 334.99083 * 16 14 12 20 20 C 1.52997 * 109.47272 * 294.91593 * 5 4 2 21 21 H 1.09000 * 109.46594 * 299.99687 * 1 2 3 22 22 H 1.08995 * 109.47145 * 59.99833 * 1 2 3 23 23 H 1.09007 * 109.47063 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47060 * 239.99734 * 2 1 3 25 25 H 1.08994 * 109.47569 * 185.83411 * 3 2 1 26 26 H 1.09000 * 109.47179 * 305.84029 * 3 2 1 27 27 H 1.09004 * 109.46609 * 65.83136 * 3 2 1 28 28 H 1.08995 * 109.47332 * 54.37194 * 4 2 1 29 29 H 1.09001 * 109.47432 * 294.36820 * 4 2 1 30 30 H 1.08995 * 109.47594 * 60.00141 * 7 5 4 31 31 H 1.09005 * 109.47111 * 299.99963 * 7 5 4 32 32 H 1.08998 * 109.47485 * 59.99438 * 8 7 5 33 33 H 1.08993 * 109.47558 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46991 * 179.97438 * 9 8 7 35 35 H 1.08995 * 109.47050 * 299.99580 * 9 8 7 36 36 H 0.96703 * 114.00227 * 299.99900 * 11 10 9 37 37 H 0.96995 * 119.99780 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.47460 * 299.99855 * 20 5 4 39 39 H 1.08995 * 109.47414 * 60.00182 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5635 -0.8450 1.1805 6 1 4.0021 0.1426 1.0380 7 6 4.0853 -1.4514 2.4847 8 6 5.6088 -1.5745 2.4162 9 6 5.9952 -2.4778 1.2432 10 6 5.4734 -1.8714 -0.0609 11 8 5.8338 -2.7153 -1.1563 12 6 6.0794 -0.5057 -0.2578 13 1 5.4409 0.3611 -0.3438 14 6 7.4490 -0.3628 -0.3281 15 7 8.2204 -1.4275 -0.3616 16 14 8.2088 1.3430 -0.3755 17 1 8.5921 1.7526 0.9995 18 1 9.4157 1.3233 -1.2405 19 1 7.2230 2.3090 -0.9231 20 6 3.9494 -1.7485 0.0077 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1250 1.4442 -0.1045 26 1 1.5939 1.9856 -0.8331 27 1 1.7645 1.9252 0.9376 28 1 1.5968 -1.7157 1.3010 29 1 1.7614 -0.1527 2.1364 30 1 3.6467 -2.4390 2.6273 31 1 3.8103 -0.8077 3.3203 32 1 6.0471 -0.5867 2.2738 33 1 5.9805 -2.0069 3.3451 34 1 7.0806 -2.5651 1.1942 35 1 5.5570 -3.4656 1.3856 36 1 6.7872 -2.8390 -1.2605 37 1 9.1838 -1.3269 -0.4114 38 1 3.5108 -2.7362 0.1502 39 1 3.5777 -1.3166 -0.9215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230794660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:40 Heat of formation + Delta-G solvation = -111.266661 kcal Electronic energy + Delta-G solvation = -17160.840242 eV Core-core repulsion = 14679.872062 eV Total energy + Delta-G solvation = -2480.968180 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27419 -37.53801 -35.46671 -34.06025 -31.72983 -30.45758 -27.94434 -26.99758 -26.69010 -23.06850 -22.08490 -20.67042 -20.29948 -18.27431 -17.05324 -16.70776 -15.94775 -15.65978 -15.18247 -14.96361 -14.66423 -14.34665 -13.89234 -13.52382 -13.23955 -13.20051 -12.99223 -12.81863 -12.58462 -12.51871 -12.31808 -12.22082 -11.98671 -11.83871 -11.45513 -11.42729 -11.27887 -11.02467 -10.95789 -10.58468 -10.38615 -9.85696 -8.12184 -6.23640 1.38412 1.41737 1.50040 2.41642 3.10934 3.86249 3.89381 4.12885 4.20195 4.32706 4.40662 4.52119 4.65312 4.77265 4.83160 4.85676 4.91391 4.95899 5.01398 5.03824 5.06735 5.14991 5.15916 5.19831 5.24281 5.25330 5.42431 5.51965 5.56106 5.64576 5.69948 5.71228 5.78571 5.86471 6.11429 6.34589 6.81103 7.43196 7.59197 8.91390 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.009923 C = 0.008743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.472905 B = 2821.117576 C = 3201.902964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C -0.145 4.145 4 C -0.100 4.100 5 C -0.072 4.072 6 H 0.064 0.936 7 C -0.103 4.103 8 C -0.100 4.100 9 C -0.128 4.128 10 C 0.230 3.770 11 O -0.613 6.613 12 C -0.529 4.529 13 H 0.053 0.947 14 C 0.027 3.973 15 N -0.918 5.918 16 Si 0.945 3.055 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.080 4.080 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.037 0.963 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.024 0.976 36 H 0.374 0.626 37 H 0.265 0.735 38 H 0.038 0.962 39 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.619 2.949 4.877 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 C -0.203 4.203 4 C -0.138 4.138 5 C -0.091 4.091 6 H 0.082 0.918 7 C -0.140 4.140 8 C -0.137 4.137 9 C -0.166 4.166 10 C 0.192 3.808 11 O -0.423 6.423 12 C -0.567 4.567 13 H 0.071 0.929 14 C -0.172 4.172 15 N -0.559 5.559 16 Si 0.771 3.229 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.118 4.118 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.224 0.776 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.098 2.880 4.796 12.429 hybrid contribution 1.699 0.631 -0.300 1.838 sum -9.399 3.511 4.496 10.995 Atomic orbital electron populations 1.21785 0.93881 1.01855 1.02085 1.21158 0.96472 0.96192 0.98249 1.21845 1.00329 0.96169 1.01924 1.21652 0.93788 1.00407 0.97910 1.21028 0.95450 0.98862 0.93744 0.91756 1.21517 0.94748 1.00562 0.97169 1.21295 0.96532 0.99559 0.96334 1.21953 1.01365 0.96182 0.97144 1.19020 0.91392 0.87546 0.82883 1.86082 1.29626 1.71991 1.54570 1.21867 0.91784 0.94262 1.48765 0.92868 1.25601 0.97693 0.99682 0.94225 1.69654 1.04895 1.29664 1.51712 0.85748 0.77945 0.81209 0.77980 1.20093 1.21211 1.19685 1.21348 0.94611 0.97863 0.97967 0.91826 0.92524 0.92577 0.92953 0.94427 0.92504 0.91786 0.92012 0.90744 0.92328 0.90865 0.93275 0.92948 0.92622 0.95726 0.77592 0.92518 0.94346 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.19 71.98 0.66 -2.29 16 2 C -0.10 -2.80 2.79 -10.79 -0.03 -2.83 16 3 C -0.15 -3.98 8.82 71.98 0.63 -3.35 16 4 C -0.10 -2.81 4.14 30.60 0.13 -2.68 16 5 C -0.07 -2.59 1.84 -10.79 -0.02 -2.61 16 6 H 0.06 2.56 4.99 -2.39 -0.01 2.55 16 7 C -0.10 -3.47 5.20 30.59 0.16 -3.31 16 8 C -0.10 -4.04 5.70 30.60 0.17 -3.87 16 9 C -0.13 -6.10 4.85 30.60 0.15 -5.95 16 10 C 0.23 11.65 0.84 -11.52 -0.01 11.64 16 11 O -0.61 -34.04 12.96 -148.98 -1.93 -35.98 16 12 C -0.53 -28.20 6.27 25.60 0.16 -28.04 16 13 H 0.05 2.85 6.76 -2.91 -0.02 2.83 16 14 C 0.03 1.42 5.18 84.65 0.44 1.86 16 15 N -0.92 -50.23 9.76 21.45 0.21 -50.02 16 16 Si 0.94 42.81 29.54 68.60 2.03 44.84 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 C -0.08 -3.47 4.11 30.61 0.13 -3.35 16 21 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.05 1.67 6.32 -2.38 -0.02 1.65 16 25 H 0.04 1.23 6.76 -2.39 -0.02 1.21 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.05 2.19 7.22 -2.39 -0.02 2.17 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 2.94 6.27 -2.39 -0.01 2.93 16 35 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.37 21.25 6.99 -74.05 -0.52 20.73 16 37 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.04 1.84 6.45 -2.39 -0.02 1.82 16 Total: -1.00 -57.16 290.30 3.36 -53.79 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.49 Total: 32.14 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 2.57 Total: -44.78 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.21 Total: -50.02 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -1.93 Total: -35.98 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -57.16 3.36 -53.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230794660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.474 kcal (2) G-P(sol) polarization free energy of solvation -57.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds