Wall clock time and date at job start Mon Mar 30 2020 03:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53111 * 1 3 3 C 1.54494 * 107.29970 * 2 1 4 4 C 1.52443 * 110.02889 * 243.18176 * 2 1 3 5 5 C 1.52658 * 110.77459 * 287.68540 * 4 2 1 6 6 C 1.52655 * 108.93073 * 298.53103 * 5 4 2 7 7 C 1.52446 * 110.80268 * 61.40605 * 6 5 4 8 8 C 1.53113 * 110.03125 * 72.45417 * 7 6 5 9 9 C 1.54500 * 107.61657 * 189.06034 * 7 6 5 10 10 C 1.50697 * 109.46757 * 301.62022 * 9 7 6 11 11 H 1.07994 * 120.00472 * 0.02562 * 10 9 7 12 12 C 1.37878 * 119.99621 * 180.27696 * 10 9 7 13 13 N 1.31516 * 120.00209 * 359.71911 * 12 10 9 14 14 Si 1.86809 * 119.99963 * 179.72524 * 12 10 9 15 15 H 1.48502 * 109.46912 * 89.99614 * 14 12 10 16 16 H 1.48498 * 109.47141 * 209.99652 * 14 12 10 17 17 H 1.48495 * 109.46701 * 329.99731 * 14 12 10 18 18 C 1.51832 * 112.63799 * 307.85650 * 7 6 5 19 19 H 1.10501 * 108.07695 * 282.20707 * 18 7 6 20 20 O 1.43787 * 108.89841 * 166.67837 * 18 7 6 21 21 H 1.09002 * 109.46816 * 296.09861 * 1 2 3 22 22 H 1.08999 * 109.47053 * 56.09327 * 1 2 3 23 23 H 1.08997 * 109.47769 * 176.09664 * 1 2 3 24 24 H 1.09001 * 109.47057 * 179.84013 * 3 2 1 25 25 H 1.08998 * 109.46999 * 299.83284 * 3 2 1 26 26 H 1.09000 * 109.46944 * 59.83820 * 3 2 1 27 27 H 1.09316 * 109.43050 * 48.25355 * 4 2 1 28 28 H 1.09309 * 109.42436 * 167.09756 * 4 2 1 29 29 H 1.08541 * 110.73650 * 60.53971 * 5 4 2 30 30 H 1.09588 * 108.92713 * 179.83831 * 5 4 2 31 31 H 1.09310 * 109.31538 * 300.71941 * 6 5 4 32 32 H 1.09321 * 109.27300 * 182.04048 * 6 5 4 33 33 H 1.08997 * 109.47115 * 182.51603 * 8 7 6 34 34 H 1.09004 * 109.47224 * 302.51481 * 8 7 6 35 35 H 1.08999 * 109.47228 * 62.51632 * 8 7 6 36 36 H 1.08997 * 109.46867 * 181.62095 * 9 7 6 37 37 H 1.09000 * 109.46996 * 61.62005 * 9 7 6 38 38 H 0.97002 * 120.00247 * 180.02562 * 13 12 10 39 39 H 0.96698 * 113.99869 * 180.02562 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5311 0.0000 0.0000 3 6 1.9905 1.4751 0.0000 4 6 2.0532 -0.6462 -1.2782 5 6 1.8313 -2.1563 -1.2512 6 6 2.6042 -2.7495 -0.0760 7 6 2.1033 -2.1777 1.2454 8 6 0.7240 -2.7539 1.5770 9 6 3.0739 -2.6424 2.3539 10 6 3.1222 -4.1484 2.3802 11 1 2.5273 -4.7201 1.6834 12 6 3.9221 -4.7965 3.2974 13 7 4.6472 -4.1004 4.1456 14 14 3.9762 -6.6634 3.3351 15 1 5.0499 -7.1459 2.4297 16 1 4.2529 -7.1227 4.7199 17 1 2.6689 -7.2056 2.8857 18 6 2.0786 -0.6596 1.2533 19 1 3.1125 -0.3006 1.4056 20 8 1.3151 -0.2121 2.3865 21 1 -0.3633 0.4521 0.9229 22 1 -0.3633 0.5733 -0.8529 23 1 -0.3634 -1.0252 -0.0700 24 1 3.0798 1.5163 0.0029 25 1 1.6105 1.9739 -0.8915 26 1 1.6056 1.9755 0.8885 27 1 1.5329 -0.2200 -2.1399 28 1 3.1218 -0.4396 -1.3797 29 1 0.7739 -2.3880 -1.1719 30 1 2.2139 -2.5885 -2.1827 31 1 3.6673 -2.5225 -0.1909 32 1 2.4786 -3.8355 -0.0729 33 1 0.3553 -2.3058 2.4996 34 1 0.0326 -2.5324 0.7639 35 1 0.8022 -3.8337 1.7034 36 1 2.7269 -2.2731 3.3189 37 1 4.0707 -2.2504 2.1518 38 1 5.2102 -4.5563 4.7906 39 1 1.2513 0.7498 2.4628 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238211492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:09 Heat of formation + Delta-G solvation = -85.559722 kcal Electronic energy + Delta-G solvation = -17298.444915 eV Core-core repulsion = 14818.591471 eV Total energy + Delta-G solvation = -2479.853444 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 226.167 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.75849 -35.17369 -34.72724 -32.28960 -30.64741 -27.42260 -26.62467 -25.90541 -25.58224 -22.82783 -21.36209 -19.14027 -17.37371 -16.55809 -16.08180 -14.96054 -14.73259 -14.25990 -13.96713 -13.54445 -12.83157 -12.63627 -12.48522 -12.17636 -12.03847 -11.82865 -11.65976 -11.43386 -11.11979 -10.98423 -10.68635 -10.60430 -10.51280 -10.35297 -10.14882 -10.08533 -9.71584 -9.43745 -9.30535 -8.70830 -8.60236 -8.24890 -5.90266 -3.90189 3.36184 3.42746 3.45611 4.52328 4.74499 4.94279 4.98267 5.14530 5.44461 5.50716 5.58404 5.67538 5.75410 5.82958 5.88496 5.92838 5.98752 6.06682 6.12481 6.23953 6.28031 6.36864 6.43377 6.50324 6.60702 6.62837 6.79614 6.92901 7.00626 7.22553 7.34591 7.43603 7.78460 7.98009 8.12419 8.22380 8.54231 9.15483 9.71732 11.21279 Molecular weight = 226.17amu Principal moments of inertia in cm(-1) A = 0.039793 B = 0.008168 C = 0.007654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.478669 B = 3427.368242 C = 3657.398822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.100 4.100 5 C -0.122 4.122 6 C -0.093 4.093 7 C -0.047 4.047 8 C -0.121 4.121 9 C 0.035 3.965 10 C -0.508 4.508 11 H 0.059 0.941 12 C 0.054 3.946 13 N -0.897 5.897 14 Si 0.886 3.114 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.135 3.865 19 H 0.039 0.961 20 O -0.557 6.557 21 H 0.058 0.942 22 H 0.043 0.957 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.029 0.971 35 H 0.060 0.940 36 H 0.022 0.978 37 H 0.009 0.991 38 H 0.258 0.742 39 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.305 8.696 -9.521 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.091 4.091 3 C -0.207 4.207 4 C -0.137 4.137 5 C -0.160 4.160 6 C -0.131 4.131 7 C -0.047 4.047 8 C -0.178 4.178 9 C -0.002 4.002 10 C -0.546 4.546 11 H 0.077 0.923 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.714 3.286 15 H -0.209 1.209 16 H -0.214 1.214 17 H -0.200 1.200 18 C 0.077 3.923 19 H 0.057 0.943 20 O -0.361 6.361 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.027 0.973 38 H 0.068 0.932 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -6.221 8.029 -9.268 13.750 hybrid contribution 0.314 -0.342 0.013 0.464 sum -5.907 7.687 -9.256 13.403 Atomic orbital electron populations 1.21876 0.94276 1.02291 1.00860 1.21129 0.96472 0.94891 0.96638 1.22357 1.01075 0.96019 1.01245 1.21379 1.00596 0.95998 0.95763 1.21501 1.00830 0.94831 0.98813 1.21352 0.98716 1.00767 0.92217 1.20336 0.97943 0.89426 0.96960 1.21744 0.95054 1.01276 0.99764 1.19534 0.92434 0.95599 0.92656 1.21296 1.24813 0.91912 1.16571 0.92329 1.25016 0.95952 0.97812 0.95825 1.69977 1.28271 1.34998 1.20417 0.86689 0.78254 0.86517 0.77107 1.20863 1.21395 1.19956 1.21702 0.92446 0.95386 0.82798 0.94258 1.86825 1.76102 1.25114 1.48051 0.92344 0.93785 0.91890 0.92731 0.92818 0.93026 0.92818 0.92330 0.92043 0.93080 0.92649 0.90948 0.92726 0.95171 0.92120 0.95971 0.97294 0.93240 0.79747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 7.79 37.21 0.29 -1.50 16 2 C -0.09 -1.27 0.55 -154.54 -0.09 -1.36 16 3 C -0.15 -1.75 7.98 37.94 0.30 -1.45 16 4 C -0.10 -1.36 4.52 -27.19 -0.12 -1.49 16 5 C -0.12 -1.84 5.60 -27.08 -0.15 -1.99 16 6 C -0.09 -1.76 4.08 -27.19 -0.11 -1.87 16 7 C -0.05 -0.95 0.39 -154.54 -0.06 -1.01 16 8 C -0.12 -2.46 7.68 37.22 0.29 -2.17 16 9 C 0.03 0.91 3.70 -27.10 -0.10 0.81 16 10 C -0.51 -14.15 7.52 -34.44 -0.26 -14.41 16 11 H 0.06 1.58 5.49 -52.49 -0.29 1.29 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 14 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.14 2.39 1.76 -27.91 -0.05 2.34 16 19 H 0.04 0.75 7.58 -51.07 -0.39 0.36 16 20 O -0.56 -9.86 10.47 -35.23 -0.37 -10.23 16 21 H 0.06 0.76 7.06 -51.93 -0.37 0.39 16 22 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.90 4.77 -51.93 -0.25 0.65 16 24 H 0.05 0.65 8.04 -51.93 -0.42 0.23 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.55 6.96 -51.93 -0.36 0.19 16 27 H 0.05 0.64 8.13 -51.75 -0.42 0.22 16 28 H 0.06 0.80 8.11 -51.75 -0.42 0.38 16 29 H 0.06 0.91 6.09 -52.19 -0.32 0.59 16 30 H 0.05 0.70 8.19 -51.60 -0.42 0.27 16 31 H 0.05 1.08 8.11 -51.75 -0.42 0.67 16 32 H 0.07 1.46 6.68 -51.75 -0.35 1.12 16 33 H 0.05 1.16 7.11 -51.93 -0.37 0.80 16 34 H 0.03 0.53 4.76 -51.93 -0.25 0.28 16 35 H 0.06 1.32 6.28 -51.93 -0.33 1.00 16 36 H 0.02 0.64 8.02 -51.93 -0.42 0.23 16 37 H 0.01 0.25 8.04 -51.93 -0.42 -0.17 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.36 4.79 7.53 45.56 0.34 5.13 16 LS Contribution 283.15 15.07 4.27 4.27 Total: -1.00 -30.44 283.15 -6.37 -36.81 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.83 Total: 1.53 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -0.16 Total: -22.63 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.74 Total: -26.65 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.37 Total: -10.23 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.44 -6.37 -36.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238211492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.750 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds